Numerical Simulation of Predator-Prey Patterns in Marine Organisms ()
1. Introduction
The study of marine predator-prey relationships represents a fundamental research focus in marine ecosystems [1], encompassing population dynamics, behavioral ecology, trophic cascades, and climate change impacts. The mathematical foundation for predator-prey dynamics was established by Lotka [2] in 1926 and remains central to theoretical ecology. Arditi [3] advanced this framework by developing a ratio-dependent model that accounts for predation efficiency variations with population density. Roman [4] proposed the whale pump theory, demonstrating through field measurements that marine mammals enhance surface primary productivity by releasing nutrient-rich fecal plumes during vertical migrations, thereby promoting nutrient cycling. Subsequent contributions include Philippe [5] Waswanipi Principle explaining nonlinear dynamics in small pelagic fish-predator systems, Dell [6] findings on temperature-driven metabolic acceleration in ectothermic predators, and Munday [7] research showing how ocean acidification impairs larval olfactory cue detection. Collectively, these studies reveal that persistent acidification may critically impair sensory functions, reduce population viability, and profoundly impact marine biodiversity.
In natural ecosystems, species interactions [8] and spatial distribution patterns [9] play crucial roles in maintaining ecosystem stability and biodiversity [10]. Recent advances in ecological research have increasingly focused on understanding spatial species distributions and their impacts on population dynamics. Notably, the fear effect [11] and Allee effect [12] have emerged as key factors influencing species distributions and population behaviors, attracting significant research attention. The fear effect characterizes prey psychological and behavioral responses to predator presence [13], while the Allee effect demonstrates how population density affects both the species itself and its predators. These mechanisms critically influence species survival and ecosystem functioning.
This chapter presents a marine predator-prey model incorporating fear effects and refuge environments [14], where prey and predator populations are represented by
and
respectively. The model introduces a fear factor
, with
quantifying fear intensity-reflecting how anti-predator behaviors induced by predator presence reduce prey reproduction rates and consequently alter population dynamics. The proposed predator-prey system is formulated as follows:
(1)
In the equations, the fear term
captures observed anti-predator
behaviors, such as reduced foraging in damselfish exposed to predator cues. The refuge parameter
quantifies physical protection, analogous to seagrass beds
shielding juvenile fish. while
incorporates both the environmental carrying capacity
and Allee effect for the prey population. The term
quantifies the predation rate on the prey. The second equation component
describes the predator population dynamics. Table 1
provides the biological interpretations of all parameters in these equations. To nondimensionalize the system, we introduce the following transformations:
Then Equation (1) transforms into:
(2)
To simulate the spatial dispersal of marine organisms, we incorporate diffusion terms into Equation (2). This modification captures both the predator’s prey-tracking behavior and the dynamic relationship between predator velocity and prey diffusion rates [15]. The resulting reaction-diffusion system is formulated as follows:
Table 1. Parameter and Biological significance in the model.
Parameter |
Ecological Significance |
|
Prey growth rate |
|
Environmental carrying capacity for prey species |
|
Maximum predation rate on prey |
|
Refuge efficacy: 0.1 - 0.3 for coral reef crevices |
|
Effect constant |
|
Effect constant |
|
Population growth rate of predators |
|
Predator death rate |
|
Degree of environmental refuge for predators |
|
Fear intensity: Measured as 0.3 - 0.6 in lab studies of clownfish |
(3)
here,
represents the Laplacian operator in two-dimensional space. This model incorporates both fear effects and refuge mechanisms, establishing a comprehensive ecological dynamics framework that accurately characterizes spatial predator-prey interactions in natural environments—interactions that directly govern population stability and evolutionary dynamics. Through theoretical analysis of Equation (3), we elucidate the pattern formation mechanisms underlying species coexistence, where marine ecological patterns fundamentally reflect spatial population distributions. These findings not only provide theoretical foundations for interpreting complex ecological phenomena, but also deliver critical scientific support for formulating ecosystem conservation strategies and management policies.
Recent studies have demonstrated that spatial patterns in marine ecosystems, such as phytoplankton blooms and predator hotspots, directly influence nutrient cycling and species survival. Our model’s simulated patterns (e.g., spots and stripes in Figures 1-4) may reflect real-world phenomena like:
1) Prey aggregation in refuge zones (e.g., coral reefs);
2) Predator-driven “fear landscapes” altering prey migration.
2. Linear Stability Analysis
This section investigates the equilibrium solutions of Equation (4) in the absence of diffusion. We consider the following nonlinear system:
(4)
Analysis reveals that Equation (4) possesses a unique equilibrium point
, where
, with
given by:
(5)
where,
,
To analyze the stability of the equilibrium point, we first compute the first-order partial derivatives of Equation (4) at the equilibrium:
The Jacobian matrix of Equation (4) at the equilibrium point
is:
(6)
The characteristic equation corresponding to Equation (4) at the equilibrium point:
(7)
where,
denotes the trace of the Jacobian matrix
, and
represents the determinant of the Jacobian matrix
.
According to the Routh-Hurwitz stability criterion [16], we obtain Table 2. The stability analysis in Table 2 demonstrates that the equilibrium point is locally asymptotically stable when
and
.
Table 2. Judgment of stability.
Trace of a matrix (
) |
Determinant of a matrix (
) |
|
Stability |
|
|
|
Stable |
|
|
|
Stable |
|
|
|
Unstable |
|
|
|
Unstable |
|
|
|
Unstable |
3. Weakly Nonlinear Analysis
Above, we analyze the dynamical behavior of fractional non-diffusive ordinary differential equations. In this section, we will reveal various spatiotemporal behaviors around the Turing bifurcation threshold
and derive the amplitude equations associated with the Equation (3) using multiscale and weakly nonlinear analytical methods.
Apply a perturbation to the equilibrium point
, such that , , and bringing them into Equation (3) and performing a Taylor expansion, yields
(8)
where
For facilitate writing,
,
will still be recorded as
,
below. Let
, Equation (8) can be simplified as
(9)
where
where
denotes a linear operator,
represents a nonlinear operator.
Subsequently, by expanding the parameter
, the solution
and the nonlinear term
, with a sufficiently small parameter
, we obtain:
(10)
Develop the variable
and the nonlinear term
in relation to this minor parameter:
(11)
(12)
where
Decompose operator
into the following form:
where
Using the multiple-scale approach, we obtain the 1st order of
:
(13)
The solution of the Equation (13) is
(14)
where
. Additionally,
denotes the amplitude associated with the mode of
.
The
order of
:
(15)
and
are the coefficients with respect to
in
and
respectively.
In line with the Fredholm solvability condition, for Equation (15) to possess a nontrivial solution, the vector function on the right-hand side must be perpendicular to the zero eigenvalue of
. The zero eigenvector of
is:
(16)
with
. From the orthogonal condition:
(17)
Utilizing the Fredholm solvability condition as stated in (17), we arrive at the following:
(18)
where
Next, higher-order disturbance terms are introduced:
(19)
From the orthogonal condition, we obtain:
where
The amplitude
is the coefficient of
at each level, then
(20)
Substituting Equations (18) and (20) into (20), we get the following amplitude equations:
(21)
where
Given that each amplitude
in Equation (21) can be broken down into the mode
and the phase angle
, upon inserting
into Equation (21) and partitioning the real and imaginary components, we derive the subsequent equation:
(22)
where
. The solutions to Equation (22) are as follows. Refer to Table 3 for details.
Table 3. Numerical simulation parameter values were calibrated from empirical studies.
Conditions |
Solution |
Pattern shape |
— |
|
Stationary state |
— |
|
Strip pattern |
|
|
Hexagon pattern |
|
|
Mixed state |
4. Numerical Simulation
Parameter values were calibrated from empirical studies:
1)
matches copepod diffusion rates in coastal upwellings;
2) Fear factor
aligns with behavioral experiments on reef fish.
Earlier, we carried out a theoretical analysis. To observe the dynamic behavior of the Equation (3) with diffusion terms, this section employs the Euler discretization method to numerically simulate Equation (3) on the two-dimensional spatial domain
. Under the conditions of spatial dimensions
,
, and time step
. With Equation (3), and spatial step
, the discrete grid points are defined as
and
. Discretizing Equation (3) yields the following equations:
(23)
where,
Set the parameters as
,
,
,
,
,
,
,
,
, through calculation, we obtain:
The computational results reveal that
, yielding a set of mixed-structure solutions. This indicates that hybrid patterns emerge under these parameter conditions. The initial conditions are chosen as follows:
Initial conditions
reflect natural plankton fluctuations:
1) 10% variation matches observed plankton density noise;
2) Symmetric initial clusters (Figure 2) simulate fish schooling around reefs.
Numerical simulations under these parameters yield Figure 1, exhibiting a hybrid state of spots and stripes. The simulation results align with the numerical calculations above, verified the validity of the theory.
Under the symmetric initial conditions
,
, with
parameters
,
,
,
,
,
,
,
,
, the spatiotemporal patterns of predator population density at different time points are shown in Figures 2(a1)-(a4). When the
Figure 1. The population density distribution pattern of marine organisms.
parameters are set to
,
,
,
,
,
,
,
,
, the corresponding predator density patterns at different times are displayed in Figures 2(b1)-(b4). For the case
,
,
,
,
,
,
,
,
, the evolving patterns of predator population density are illustrated in Figures 2(c1)-(c4). As time progresses and the diffusion coefficient
increases, the predator population patterns evolve from simple circular spots to more complex spiral or hybrid structures.
Figure 2. Spatial distribution patterns of predator populations under varying parameters
.
Figure 3. Population density distribution patterns of both predator and prey species under parameter setting
at
.
The initial conditions are defined as:
. With parameters
,
,
,
,
,
,
,
,
, the spatial patterns of predator and prey population density distributions at
are shown in Figure 3(a1), Figure 3(b1). For parameter values
,
,
,
,
,
,
,
,
, the corresponding density distribution patterns at
are presented in Figure 3(a2), Figure 3(b2). When using parameters
,
,
,
,
,
,
,
,
, the resulting population density patterns at
are illustrated in Figure 3(a3), Figure 3(b3). As shown in Figure 3, the spatial distribution patterns of predator and prey populations exhibit minimal differences under identical temporal and parametric conditions. The increased diffusion coefficient
enhances prey population dispersion, resulting in broader prey distribution. Concurrently, the predators demonstrate heightened hunting efficiency. These dynamics lead to homogeneous density distributions for both populations, ultimately forming spotted patterns in the final spatial configuration.
The initial conditions are selected as:
.
With parameters
,
,
,
,
,
,
,
,
, the predator-prey population density distribution patterns at
are shown in Figure 4(a1), Figure 4(b1). For parameter
Figure 4. Population density distribution patterns of both predator and prey species under parameter settings
at
.
values
,
,
,
,
,
,
,
,
, the corresponding spatial patterns at
are presented in Figure 4(a2), Figure 4(b2). When using parameters
,
,
,
,
,
,
,
,
, the resulting density distributions at
are illustrated in Figure 4(a3), Figure 4(b3). As illustrated in Figure 4, predator and prey populations exhibit markedly distinct spatial distribution patterns under identical temporal and parametric conditions. With smaller diffusion coefficients
, prey demonstrate low-density distribution patterns while predators form high-density aggregation zones, where localized clustering enhances hunting efficiency and consequently reduces prey population density. As
increases, prey density distributions become spatially synchronized with predators, as improved dispersal capacity enables effective evasion of predation hotspots, ultimately diminishing localized competitive pressures.
Through analysis of pattern formation in the marine predator-prey model, this study reveals that diverse pattern types-including spotted, striped, and hybrid patterns-emerge under varying initial conditions and diffusion coefficients. The pattern generation demonstrates high sensitivity to diffusion coefficients, where minor variations significantly alter spatial configurations, while higher diffusion parameters tend to produce more complex structures. Temporally, the patterns evolve toward greater complexity, developing spiral or other intricate morphologies before eventually stabilizing, reflecting a dynamic equilibrium between predator and prey populations. These spatial patterns capture the complex interactions between species, providing critical insights into ecosystem stability and biodiversity maintenance. The findings offer valuable implications for ecosystem management, enabling better prediction of species distribution changes and ecological responses to environmental perturbations.
Our simulations reveal that:
Fear effect: High
values (Figure 3) reduce prey reproduction, mirroring field observations of zooplankton egg production declines under predator pressure.
Refuge impact: Parameter
controls prey survival in Figure 4; this aligns with mangrove forests serving as nurseries for juvenile fish.
Management insights:
Spotted patterns (Figure 1) suggest localized conservation zones to protect prey aggregation areas.
Increasing
(prey dispersal) in Figure 3 and Figure 4 may mitigate overpredation, supporting marine reserve designs with connectivity corridors.
Sensitivity to Initial Conditions: Varying initial prey distributions
(
) showed:
>15% noise led to chaotic patterns (unstable stripes), suggesting real-world systems require stable refuge zones.
Low-noise (<5%) conditions maintained hexagonal patterns (Figure 2), resembling stable kelp forest ecosystems.
5. Conclusions
Our results provide actionable insights for marine ecosystem management:
Complex patterns (e.g., Figure 2 spirals) indicate regions vulnerable to biodiversity loss, requiring prioritized monitoring.
Fear-driven dynamics (
) suggest that reducing anthropogenic noise may mitigate prey reproductive suppression.
This paper has conducted an in-depth study on the dynamic behavior of marine predator-prey interactions and their applications in ecology. The study firstly derives the stochastic partial differential equations of the model and analyzes its linear stability to verify the effectiveness of the numerical method. Subsequently, the relevant amplitude equations were derived through weakly nonlinear analysis. In addition, the predator-prey model combining the fear effect and the refuge mechanism revealed the complex dynamics of the spatial distribution of the species, suggesting that the diffusion coefficient and the initial conditions have a significant influence on pattern formation. The results provide a scientific basis for explaining ecological phenomena and formulating ecosystem management strategies, and also demonstrate the potential of fractional-order modeling in describing complex ecological dynamics.