<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">AM</journal-id><journal-title-group><journal-title>Applied Mathematics</journal-title></journal-title-group><issn pub-type="epub">2152-7385</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/am.2014.519300</article-id><article-id pub-id-type="publisher-id">AM-51462</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Computer Science&amp;Communications</subject><subject> Engineering</subject><subject> Physics&amp;Mathematics</subject></subj-group></article-categories><title-group><article-title>
 
 
  On the Stability of Stochastic Jump Kinetics
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>tefan</surname><given-names>Engblom</given-names></name><xref ref-type="aff" rid="aff1"><sub>1</sub></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Division of Scientific Computing, Department of Information Technology, Uppsala University, Uppsala, Sweden</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>stefane@it.uu.se</email></corresp></author-notes><pub-date pub-type="epub"><day>04</day><month>11</month><year>2014</year></pub-date><volume>05</volume><issue>19</issue><fpage>3217</fpage><lpage>3239</lpage><history><date date-type="received"><day>24</day>	<month>September</month>	<year>2014</year></date><date date-type="rev-recd"><day>12</day>	<month>October</month>	<year>2014</year>	</date><date date-type="accepted"><day>24</day>	<month>October</month>	<year>2014</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Motivated by the lack of a suitable constructive framework for analyzing popular stochastic models of Systems Biology, we devise conditions for existence and uniqueness of solutions to certain jump stochastic differential equations (SDEs). Working from simple examples we find 
  <em>reasonable</em> and 
  <em>explicit</em> assumptions on the driving coefficients for the SDE representation to make sense. By “reasonable” we mean that stronger assumptions generally do not hold for systems of practical interest. In particular, we argue against the traditional use of global Lipschitz conditions and certain common growth restrictions. By “explicit”, finally, we like to highlight the fact that the various constants occurring among our assumptions 
  <em>all can be determined once the model is fixed</em>. We show how basic long time estimates and some limit results for perturbations can be derived in this setting such that these can be contrasted with the corresponding estimates from deterministic dynamics. The main complication is that the natural path-wise representation is generated by a counting measure with an intensity that depends nonlinearly on the state.
 
</p></abstract><kwd-group><kwd>Nonlinear Stability</kwd><kwd> Perturbation</kwd><kwd> Continuous-Time Markov Chain</kwd><kwd> Jump Process</kwd><kwd> Uncertainty</kwd><kwd> Rate Equation</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>The observation that detailed modeling of biochemical processes inside living cells is a close to hopeless task is a strong argument in favor of stochastic models. Such models are often thought to be more accurate than conventional rate-diffusion laws, yet remain more manageable than, say, descriptions formed at the level of individual molecules. Indeed, several studies [<xref ref-type="bibr" rid="scirp.51462-ref1">1</xref>] -[<xref ref-type="bibr" rid="scirp.51462-ref3">3</xref>] have showed that noisy models have the ability to capture relevant phenomena and to explain actual, observed dynamics.</p><p>In this work we shall consider some “flow” properties of a stochastic dynamical system in the form of a quite general continuous-time Markov chain. Since the pioneering work of Gillespie [<xref ref-type="bibr" rid="scirp.51462-ref4">4</xref>] [<xref ref-type="bibr" rid="scirp.51462-ref5">5</xref>] , in the Systems Biology context this type of model is traditionally described in terms of a (chemical) master equation (CME). This is the forward Kolmogorov equation of a certain jump stochastic differential equation (jump SDE for brevity), driven by independent point processes with state-dependent intensities. Despite the popularity of the master equation approach, little analysis on a per trajectory-basis of actual models has been attempted.</p><p>In the general literature, when discussing existence/uniqueness and various types of perturbation results, different choices of assumptions with different trade-offs have been made. One finds that the treatment often falls into one of two categories taking either a “mathematical” or a “physical” viewpoint. Both of the conditions are highly general but with subsequently less transparent proofs and resulting in more abstract bounds. Or the conditions are formed out of convenience, say, involving global Lipschitz constants, and classical arguments carry through with only minor modifications.</p><p>Protter ( [<xref ref-type="bibr" rid="scirp.51462-ref6">6</xref>] Chap. V) offers a nice discussion from the mathematical point of view and in ascending order of generality, including the arguably highly unrestrictive assumption of locally Lipschitz continuous coefficients. Other authors ( [<xref ref-type="bibr" rid="scirp.51462-ref7">7</xref>] , Chap. 6, [<xref ref-type="bibr" rid="scirp.51462-ref8">8</xref>] , Chap. 3-5) also treat the evolution of general jump-diffusion SDEs in conti- nuous state spaces.</p><p>A study of the flow properties of jump SDEs is found in [<xref ref-type="bibr" rid="scirp.51462-ref9">9</xref>] , where the setting is scalar and the state is continuous. In [<xref ref-type="bibr" rid="scirp.51462-ref10">10</xref>] jump stochastic partial differential equations are treated, and existence/uniqueness results as well as ergodic results for the case of a multiplicative noise, are found in [<xref ref-type="bibr" rid="scirp.51462-ref11">11</xref>] [<xref ref-type="bibr" rid="scirp.51462-ref12">12</xref>] . Numerical aspects in a similar setting are discussed in [<xref ref-type="bibr" rid="scirp.51462-ref13">13</xref>] .</p><p>In a more applied context, stability is often thought of as implied from physical premises and the solution is tactically assumed to be confined inside some bounded region ( [<xref ref-type="bibr" rid="scirp.51462-ref14">14</xref>] , Chap. V). The fundamental issue here is that for open systems in a stochastic setting, there is a non-zero probability of reaching any finite state and global assumptions must be formed with great care. The analysis of open networks under an a priori assumption of boundedness is therefore quite difficult to interpret other than in a qualitative sense. Notable examples in this setting include time discretization strategies [<xref ref-type="bibr" rid="scirp.51462-ref15">15</xref>] [<xref ref-type="bibr" rid="scirp.51462-ref16">16</xref>] , time-parallel simulation techniques [<xref ref-type="bibr" rid="scirp.51462-ref17">17</xref>] , and parameter perturbations [<xref ref-type="bibr" rid="scirp.51462-ref18">18</xref>] .</p><p>Evidently, essentially no systems of interest satisfy global Lipschitz assumptions since the fundamental inte- raction almost always takes the form of a quadratic term. Interestingly, for ordinary differential equations, it has been shown [<xref ref-type="bibr" rid="scirp.51462-ref19">19</xref>] that Lipschitz continuous coefficients imply a computationally polynomial-space complete solution; thus providing a kind of explanation for the convenience with this weak feedback assumption. It is also known [<xref ref-type="bibr" rid="scirp.51462-ref20">20</xref>] , that with SDEs, superlinearly growing coefficients may in fact cause the forward Euler method to diverge.</p><sec id="s1_1"><title>1.1. Agenda</title><p>Besides its expository material, the purpose of this paper is to devise simple conditions that imply stability for finite and, in certain cases, infinite times, and that, when applied to systems of practical interest, yield explicit expressions for the associated stability estimates. As a result the framework developed herein applies in a constructive way to any chemical network, of arbitrary size and topology, formed by any combination of the elementary reactions (2.3) to be presented in Section 2. Additionally, it will be clear how to encompass also other types of nonlinear reactions that typically result from adiabatic simplifications.</p><p>As an argument in favor of this bottom-up approach one can note that, for evolutionary reasons, biochemical systems tend to operate close to critical points in phase-space where the efficiency is the highest. Clearly, for such dynamical systems, an analysis by analogy might be highly misleading.</p><p>We also like to argue that our results are of interest from the modeling point of view. Due to the type of phenomenological arguments often involved, judging the relative effect of the (non-probabilistic) epistemic uncer- tainty is a fundamental issue which has so far not rendered a consistent analysis.</p></sec><sec id="s1_2"><title>1.2. Outline</title><p>The expository material in Section 2 is devoted to formulating the type of processes we are interested in. We state the master equation as well as the corresponding jump SDE and we also look at some simple, yet informative actual examples. Since it is expected that the properties of the stochastic dynamics are somehow similar to those of the deterministic version, we search for a set of minimal assumptions in the latter setting in Section 3. Techniques for finding explicit values of the constants occurring among our assumptions are also devised. The main results of the paper are found in Section 4 where we put our theory together and prove existence and uniqueness, as well as long time estimates and limit results for perturbations. A concluding discussion is found in Section 5.</p></sec></sec><sec id="s2"><title>2. Stochastic Jump Kinetics</title><p>In this section we start with the physicist’s traditional viewpoint of pure jump processes and write down the governing master equations. These are evolution equations for the probability densities of continuous-time Markov chains over a discrete state space. Although the application considered here is mesoscopic chemical kinetics, identical or very similar stochastic models are also used in Epidemiology [<xref ref-type="bibr" rid="scirp.51462-ref21">21</xref>] , Genetics [<xref ref-type="bibr" rid="scirp.51462-ref22">22</xref>] and Sociodynamics [<xref ref-type="bibr" rid="scirp.51462-ref23">23</xref>] , to name just a few.</p><p>We then proceed with discussing a path-wise representation in terms of a stochastic jump differential equation. The reason the sample path representation is interesting is the possibility to reason about flow properties and thus compare functionals of single trajectories. This is generally not possible with the master equation approach.</p><p>For later use we conclude the section by looking at some prototypical models. A simple analysis shows, somewhat surprisingly, that an innocent-looking example produces second moments that grow indefinitely.</p><sec id="s2_1"><title>2.1. Reaction Networks and the Master Equation</title><p>We consider a chemical network consisting of D different chemical species interacting according to R prescribed reaction pathways. At any given time t, the state of the system is an integer vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six5.png" xlink:type="simple"/></inline-formula> counting the number of individual molecules of each species. A reaction law is a prescribed change of state with an intensity defined by a reaction propensity,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six6.png" xlink:type="simple"/></inline-formula>. This is the transition probability per unit of time for moving from the state <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six7.png" xlink:type="simple"/></inline-formula> to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six8.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.51462-formula595"><label>(2.1)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six9.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six10.png" xlink:type="simple"/></inline-formula> is the transition step and is the rth column in the stoichiometric matrix<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six11.png" xlink:type="simple"/></inline-formula>. Informally, for states<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six12.png" xlink:type="simple"/></inline-formula>, we can picture (2.1) as a stochastic version of the time-homogeneous ordinary differential equation</p><disp-formula id="scirp.51462-formula596"><label>(2.2)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six13.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six14.png" xlink:type="simple"/></inline-formula> is the column vector of reaction propensities.</p><p>The physical premises leading to a description in the form of discrete transition laws (2.1) often imply the existence of a system size <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six15.png" xlink:type="simple"/></inline-formula> (e.g. physical volume or total number of individuals). For instance, in a given volume <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six16.png" xlink:type="simple"/></inline-formula> the elementary chemical reactions can be written using the state vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six17.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula597"><label>(2.3)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six18.png"  xlink:type="simple"/></disp-formula><p>with the names of the species in capitals. These propensities are generally scaled such that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six19.png" xlink:type="simple"/></inline-formula> for some dimensionless function<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six20.png" xlink:type="simple"/></inline-formula>. Intensities of this form are called density dependent and arise naturally in a number of situations ( [<xref ref-type="bibr" rid="scirp.51462-ref24">24</xref>] , Chap. 11). For the rest of this paper, we conveniently take <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six21.png" xlink:type="simple"/></inline-formula> and defer system’s size analysis to another occasion.</p><p>The models we consider here all have states in the positive integer lattice and the assumption that no transition can yield a state outside <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six22.png" xlink:type="simple"/></inline-formula> is therefore natural. We make this formal as follows ( [<xref ref-type="bibr" rid="scirp.51462-ref25">25</xref>] , Chap. 8.2.2, Definition 2.4):</p><p>Assumption 2.1 (Conservation and stability). For all propensities, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six23.png" xlink:type="simple"/></inline-formula>for any <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six24.png" xlink:type="simple"/></inline-formula> such that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six24.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six25.png" xlink:type="simple"/></inline-formula>, and we also restrict initial data to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six24.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six25.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six26.png" xlink:type="simple"/></inline-formula>. Furthermore, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six24.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six25.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six26.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six27.png" xlink:type="simple"/></inline-formula>such that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six24.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six25.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six26.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six27.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six28.png" xlink:type="simple"/></inline-formula> is finite for all finite arguments<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six23.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six24.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six25.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six26.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six27.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six28.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six29.png" xlink:type="simple"/></inline-formula>.</p><p>To state the chemical master equation (CME), let for brevity <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six30.png" xlink:type="simple"/></inline-formula> be the probability that a certain number <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six30.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six31.png" xlink:type="simple"/></inline-formula> of molecules is present at time <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six30.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six31.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six32.png" xlink:type="simple"/></inline-formula> conditioned upon an initial state<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six30.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six31.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six32.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six33.png" xlink:type="simple"/></inline-formula>. The CME is then given by ( [<xref ref-type="bibr" rid="scirp.51462-ref14">14</xref>] , Chap. V)</p><disp-formula id="scirp.51462-formula598"><label>(2.4)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six34.png"  xlink:type="simple"/></disp-formula><p>The convention of the transpose of the operator to the right of (2.4) is the standard mathematical formulation of Kolmogorov’s forward differential system ( [<xref ref-type="bibr" rid="scirp.51462-ref25">25</xref>] , Chap. 8.3) in terms of which <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six35.png" xlink:type="simple"/></inline-formula> is the infinitesimal generator of the associated Markov process. This is also the adjoint of the master operator <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six35.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six36.png" xlink:type="simple"/></inline-formula> in the sense that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six35.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six36.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six37.png" xlink:type="simple"/></inline-formula> in the Euclidean inner product over the state space. An explicit representation is</p><disp-formula id="scirp.51462-formula599"><label>(2.5)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six38.png"  xlink:type="simple"/></disp-formula><p>such that the propensities in (2.1) can be retrieved,</p><disp-formula id="scirp.51462-formula600"><label>(2.6)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six39.png"  xlink:type="simple"/></disp-formula><p>Under assumptions to be prescribed in Section 4.1 it holds that the dynamics of the expected value of some time-independent unknown function<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six40.png" xlink:type="simple"/></inline-formula>, conditioned upon the initial state<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six40.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six41.png" xlink:type="simple"/></inline-formula>, can be written</p><disp-formula id="scirp.51462-formula601"><label>(2.7)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six42.png"  xlink:type="simple"/></disp-formula><p>We now consider a path-wise representation for the stochastic process<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six43.png" xlink:type="simple"/></inline-formula>.</p></sec><sec id="s2_2"><title>2.2. The Sample Path Representation</title><p>In the present context of analyzing models in stochastic chemical kinetics, the path-wise jump SDE representation seems to have been first put to use in [<xref ref-type="bibr" rid="scirp.51462-ref26">26</xref>] , and it was later further detailed in [<xref ref-type="bibr" rid="scirp.51462-ref16">16</xref>] . It should be noted, however, that an equivalent representation was used much earlier by Kurtz (see the monograph [<xref ref-type="bibr" rid="scirp.51462-ref24">24</xref>] ).</p><p>We thus assume the existence of a probability space <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six44.png" xlink:type="simple"/></inline-formula> with the filtration <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six45.png" xlink:type="simple"/></inline-formula> containing <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six46.png" xlink:type="simple"/></inline-formula>- dimensional Poisson processes. The state of the system <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six47.png" xlink:type="simple"/></inline-formula> will be constructed from a stochastic integral with respect to suitably chosen Poisson random measures.</p><p>The transition probability (2.1) defines a counting process <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six48.png" xlink:type="simple"/></inline-formula> counting at time <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six49.png" xlink:type="simple"/></inline-formula> the number of reactions of type <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six50.png" xlink:type="simple"/></inline-formula> that has occurred since<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six51.png" xlink:type="simple"/></inline-formula>. It follows that these processes fully determine the state<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six51.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six52.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula602"><label>(2.8)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six53.png"  xlink:type="simple"/></disp-formula><p>The counting processes are obtained from the transition intensities (cf. (2.1))</p><disp-formula id="scirp.51462-formula603"><label>(2.9)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six54.png"  xlink:type="simple"/></disp-formula><p>where by <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six55.png" xlink:type="simple"/></inline-formula> we mean the value of the process prior to any transitions occurring at time<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six55.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six56.png" xlink:type="simple"/></inline-formula>, and where the little-o notation is understood uniformly with respect to the state variable. Alternatively, using Kurtz’s random time change representation ( [<xref ref-type="bibr" rid="scirp.51462-ref24">24</xref>] , Chap. 6.2), we can produce the counting process from a standard unit-rate Poisson process<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six55.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six56.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six57.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula604"><label>(2.10)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six58.png"  xlink:type="simple"/></disp-formula><p>The marked counting measure ( [<xref ref-type="bibr" rid="scirp.51462-ref27">27</xref>] , Chap. VIII) <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six59.png" xlink:type="simple"/></inline-formula>with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six59.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six60.png" xlink:type="simple"/></inline-formula> defines an increasing sequence of arrival times <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six59.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six60.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six61.png" xlink:type="simple"/></inline-formula> with corresponding “marks” <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six59.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six60.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six62.png" xlink:type="simple"/></inline-formula>according to some probability distribution which we will take to be uniform. The intensity <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six59.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six60.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six62.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six63.png" xlink:type="simple"/></inline-formula> of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six59.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six60.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six62.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six63.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six64.png" xlink:type="simple"/></inline-formula> is the Lebesgue measure scaled by the corresponding propensity,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six59.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six60.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six62.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six63.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six64.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six65.png" xlink:type="simple"/></inline-formula>. Using this formalism, (2.8) and (2.10) can be written in the jump SDE form</p><disp-formula id="scirp.51462-formula605"><label>(2.11)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six66.png"  xlink:type="simple"/></disp-formula><p>where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six67.png" xlink:type="simple"/></inline-formula>. Here, the time <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six67.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six68.png" xlink:type="simple"/></inline-formula> to the arrival of the next reaction of type <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six67.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six68.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six69.png" xlink:type="simple"/></inline-formula> is exponentially distributed with intensity<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six67.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six68.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six69.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six70.png" xlink:type="simple"/></inline-formula>. Note that, by virtue of the nature of the propensities, the intensities of the counting processes therefore depend nonlinearly on the state ( [<xref ref-type="bibr" rid="scirp.51462-ref27">27</xref>] , Chap. II.3).</p><p>Using that the point processes are independent and therefore have no common jump times ( [<xref ref-type="bibr" rid="scirp.51462-ref25">25</xref>] , Chap. 8.1.3), we can obtain a sometimes more transparent notation in terms of a scalar counting measure. Define for this purpose and for any state <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six71.png" xlink:type="simple"/></inline-formula> the cumulative intensities</p><disp-formula id="scirp.51462-formula606"><label>(2.12)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six72.png"  xlink:type="simple"/></disp-formula><p>such that the total intensity is given by<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six73.png" xlink:type="simple"/></inline-formula>. Let the marks <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six73.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six74.png" xlink:type="simple"/></inline-formula> be uniformly distributed on<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six73.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six74.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six75.png" xlink:type="simple"/></inline-formula>. Then the frequency of each reaction can be controlled through a set of indicator functions <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six73.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six74.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six75.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six76.png" xlink:type="simple"/></inline-formula> defined according to</p><disp-formula id="scirp.51462-formula607"><label>(2.13)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six77.png"  xlink:type="simple"/></disp-formula><p>Put <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six78.png" xlink:type="simple"/></inline-formula> and define also for later use the indicator form</p><disp-formula id="scirp.51462-formula608"><label>(2.14)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six79.png"  xlink:type="simple"/></disp-formula><p>such that</p><disp-formula id="scirp.51462-formula609"><label>(2.15)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six80.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six81.png" xlink:type="simple"/></inline-formula> is defined in (2.2).</p><p>The jump SDE (2.11) can now be written in terms of a scalar counting random measure <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six82.png" xlink:type="simple"/></inline-formula> through a state- dependent thinning procedure ( [<xref ref-type="bibr" rid="scirp.51462-ref28">28</xref>] , Chap. 7.5),</p><disp-formula id="scirp.51462-formula610"><label>(2.16)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six83.png"  xlink:type="simple"/></disp-formula><p>Equation (2.16) expresses exponentially distributed reaction times that arrive according to a point process of intensity <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six84.png" xlink:type="simple"/></inline-formula> carrying a mark which is uniformly distributed in<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six84.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six85.png" xlink:type="simple"/></inline-formula>. This mark implies the ignition of one of the reaction channels according to the acceptance-rejection rule (2.13).</p><p>One frequently decomposes (2.16) into its “drift” and “jump” parts,</p><disp-formula id="scirp.51462-formula611"><label>(2.17)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six86.png"  xlink:type="simple"/></disp-formula><p>The second term in (2.17) is driven by the compensated measure <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six87.png" xlink:type="simple"/></inline-formula> and is a local martingale provided in essence that the path is absolutely integrable (see [<xref ref-type="bibr" rid="scirp.51462-ref27">27</xref>] , Chap. VIII.1, Corollary C4 for details).</p><sec id="s2_2_1"><title>2.2.1. Localization: It&#244;’s and Dynkin’s Formulas</title><p>In analytic work it is often necessary to “tame” the process by deriving results under a stopping time <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six88.png" xlink:type="simple"/></inline-formula> in some norm. Results for the stopped process <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six88.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six89.png" xlink:type="simple"/></inline-formula> can then be transferred to the original process by letting <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six88.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six89.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six90.png" xlink:type="simple"/></inline-formula> under suitable conditions.</p><p>Although there are many general versions of It&#244;’s change of variables formula available in the setting of semi- martingales (see for example [<xref ref-type="bibr" rid="scirp.51462-ref8">8</xref>] , Chap. 2.7 and [<xref ref-type="bibr" rid="scirp.51462-ref6">6</xref>] , Chap. II.7), we shall get around with the following simple version ( [<xref ref-type="bibr" rid="scirp.51462-ref7">7</xref>] , Chap. 4.4.2). By the properties of the semi-martingale pure jump process we have for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six91.png" xlink:type="simple"/></inline-formula></p><disp-formula id="scirp.51462-formula612"><label>(2.18)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six92.png"  xlink:type="simple"/></disp-formula><p>where the sum is over jump times<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six93.png" xlink:type="simple"/></inline-formula>. Using that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six93.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six94.png" xlink:type="simple"/></inline-formula> we can write this in differential form as</p><disp-formula id="scirp.51462-formula613"><label>(2.19)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six95.png"  xlink:type="simple"/></disp-formula><p>Alternatively, decomposing (2.18) into drift- and jump parts and taking expectation values we get, since the compensated measure is a local martingale,</p><disp-formula id="scirp.51462-formula614"><label>(18)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six96.png"  xlink:type="simple"/></disp-formula><p>This is Dynkin’s formula ( [<xref ref-type="bibr" rid="scirp.51462-ref25">25</xref>] , Chap. 9.2.2) for the stopped process and we note that (2.7) is just a differential version.</p></sec><sec id="s2_2_2"><title>2.2.2. Coupled Processes</title><p>When considering stability properties we will need to compare different trajectories with respect to the same noise. The details of this coupling are not defined in either (2.11) or (2.16) and must in fact be chosen explicitly. Since this equality is easy to inspect for a unit-rate Poisson process, the viewpoint of local time expressed in (2.10) provides an answer; two processes <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six97.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six97.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six98.png" xlink:type="simple"/></inline-formula> may be regarded as coupled if and only if they are evolved using identical Poisson processes<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six97.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six98.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six99.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six97.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six98.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six99.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six100.png" xlink:type="simple"/></inline-formula>in (2.8) and (2.10). This approach was first used by Kurtz [<xref ref-type="bibr" rid="scirp.51462-ref29">29</xref>] in the context of the random time change representation. Algorithmically it implies the Common Reaction Path (CRP) method for simulating coupled processes [<xref ref-type="bibr" rid="scirp.51462-ref30">30</xref>] (see also [<xref ref-type="bibr" rid="scirp.51462-ref17">17</xref>] ).</p><p>A refinement of this construction was devised, also by Kurtz, in ( [<xref ref-type="bibr" rid="scirp.51462-ref31">31</xref>] , see Equations (2.2), (2.3)). In turn, this approach implies the Coupled Finite Difference method [<xref ref-type="bibr" rid="scirp.51462-ref18">18</xref>] (but see also [<xref ref-type="bibr" rid="scirp.51462-ref16">16</xref>] [<xref ref-type="bibr" rid="scirp.51462-ref26">26</xref>] ), and is more amenable to analysis. This is also the construction formalized below under our current framework.</p><p>To obtain such a coupled version of (2.16) we will have to make the thinning dependent on both trajectories. This is achieved by firstly replacing the cumulative intensities in (2.12) with the base (or minimal) intensities</p><disp-formula id="scirp.51462-formula615"><label>(2.21)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six101.png"  xlink:type="simple"/></disp-formula><p>and use the new total base intensity <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six102.png" xlink:type="simple"/></inline-formula> as the intensity of the counting measure<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six102.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six103.png" xlink:type="simple"/></inline-formula>;<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six102.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six103.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six104.png" xlink:type="simple"/></inline-formula>. We also modify (2.13) accordingly,</p><disp-formula id="scirp.51462-formula616"><label>(2.22)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six105.png"  xlink:type="simple"/></disp-formula><p>Secondly, we also define the remainder intensity,</p><disp-formula id="scirp.51462-formula617"><label>(2.23)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six106.png"  xlink:type="simple"/></disp-formula><p>In analogy with the previous construction we have the associated total intensity <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six107.png" xlink:type="simple"/></inline-formula> and counting measure<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six107.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six108.png" xlink:type="simple"/></inline-formula>;<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six107.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six108.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six109.png" xlink:type="simple"/></inline-formula>. This time the thinning procedure is non-symmetric in its two first arguments,</p><disp-formula id="scirp.51462-formula618"><label>(2.24)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six110.png"  xlink:type="simple"/></disp-formula><p>with the non-symmetricity due to</p><disp-formula id="scirp.51462-formula619"><label>(2.25)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six111.png"  xlink:type="simple"/></disp-formula><p>As a concrete example of how this comparative thinning might be used, consider the following variant of (2.19),</p><disp-formula id="scirp.51462-formula620"><label>(2.26)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six112.png"  xlink:type="simple"/></disp-formula><p>For this specific example, the terms governed by the base counting measure <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six113.png" xlink:type="simple"/></inline-formula> cancel out altogether.</p><p>We mention also that an equivalent construction, but one that leads to different algorithms, can be obtained via a thinning of a single measure [<xref ref-type="bibr" rid="scirp.51462-ref16">16</xref>] [<xref ref-type="bibr" rid="scirp.51462-ref26">26</xref>] . Defining instead</p><disp-formula id="scirp.51462-formula621"><label>(2.27)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six114.png"  xlink:type="simple"/></disp-formula><p>implying the total intensity <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six115.png" xlink:type="simple"/></inline-formula> and associated counting measure<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six115.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six116.png" xlink:type="simple"/></inline-formula>; <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six115.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six116.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six117.png" xlink:type="simple"/></inline-formula>. By construction the indicator functions are now non-symmetric in their first two arguments,</p><disp-formula id="scirp.51462-formula622"><label>(2.28)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six118.png"  xlink:type="simple"/></disp-formula><p>In analogy to (2.26) we get</p><disp-formula id="scirp.51462-formula623"><label>(2.29)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six119.png"  xlink:type="simple"/></disp-formula><p>This time, however, the intensity of the counting measure is generally larger and the equivalence is obtained as a result of the thinning procedure.</p></sec><sec id="s2_2_3"><title>2.2.3. The Validity of the Master Equation</title><p>With this much formalism developed, we may conveniently quote the following result:</p><p>Theorem 2.1 ( [<xref ref-type="bibr" rid="scirp.51462-ref25">25</xref>] , Chap. 8.3.2, Theorem 3.3). Under Assumption 2.1, and if additionally, for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six120.png" xlink:type="simple"/></inline-formula> it holds that</p><disp-formula id="scirp.51462-formula624"><label>(2.30)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six121.png"  xlink:type="simple"/></disp-formula><p>then (2.7) is valid for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six122.png" xlink:type="simple"/></inline-formula>.</p><p>Since the governing Equation (2.7) for the expected value of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six123.png" xlink:type="simple"/></inline-formula> is a direct consequence of (2.4), we can similarly conclude the following:</p><p>Corollary 2.2 Under the assumptions of Theorem 2.1, and if, moreover, in an arbitrary norm<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six124.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula625"><label>(2.31)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six125.png"  xlink:type="simple"/></disp-formula><p>then (2.7) is valid for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six126.png" xlink:type="simple"/></inline-formula>.</p><p>In stating these results we have suppressed the conditional dependency on the initial state which we for simplicity consider to be some non-random state<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six127.png" xlink:type="simple"/></inline-formula>.</p></sec></sec><sec id="s2_3"><title>2.3. Concrete Examples</title><p>Consider the bi-molecular birth-death system,</p><disp-formula id="scirp.51462-formula626"><label>(2.32)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six128.png"  xlink:type="simple"/></disp-formula><p>that is, the system is in contact with a large reservoir such that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six129.png" xlink:type="simple"/></inline-formula>- and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six129.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six130.png" xlink:type="simple"/></inline-formula>-molecules are emitted at a constant rate<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six129.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six130.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six131.png" xlink:type="simple"/></inline-formula>. Additionally, a decay reaction happens with probability <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six129.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six130.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six131.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six132.png" xlink:type="simple"/></inline-formula> per unit of time whenever two molecules meet. For this example we have the stoichiometric matrix</p><disp-formula id="scirp.51462-formula627"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six133.png"  xlink:type="simple"/></disp-formula><p>and the vector propensity function</p><disp-formula id="scirp.51462-formula628"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six134.png"  xlink:type="simple"/></disp-formula><p>where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six135.png" xlink:type="simple"/></inline-formula>.</p><p>For a state<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six136.png" xlink:type="simple"/></inline-formula>, define<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six136.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six137.png" xlink:type="simple"/></inline-formula>. It&#244;’s formula (2.19) with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six136.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six137.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six138.png" xlink:type="simple"/></inline-formula> yields</p><disp-formula id="scirp.51462-formula629"><label>(2.33)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six139.png"  xlink:type="simple"/></disp-formula><p>which upon a moments consideration is just the same thing as the model</p><disp-formula id="scirp.51462-formula630"><label>(2.34)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six140.png"  xlink:type="simple"/></disp-formula><p>that is, a constant intensity discrete random walk process. An explicit solution is the difference between two independent Poisson distributions,</p><disp-formula id="scirp.51462-formula631"><label>(2.35)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six141.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six142.png" xlink:type="simple"/></inline-formula> is a normally distributed random variable of the indicated mean and variance. Hence <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six143.png" xlink:type="simple"/></inline-formula> fluctuates between arbitrarily large and small values as<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six144.png" xlink:type="simple"/></inline-formula>.</p>Reversible Versions<p>From time to time below we shall be concerned with the following closed version of (2.32), consisting of a single reversible reaction,</p><disp-formula id="scirp.51462-formula632"><label>(2.36a)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six145.png"  xlink:type="simple"/></disp-formula><p>This is clearly a finite system since the number <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six146.png" xlink:type="simple"/></inline-formula> is always preserved. An open version of the same system is</p><disp-formula id="scirp.51462-formula633"><label>(2.36b)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six147.png"  xlink:type="simple"/></disp-formula><p>and will prove to be a useful example in the stochastic setting since formally, all states in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six148.png" xlink:type="simple"/></inline-formula> are reachable. For (2.36a) we have</p><disp-formula id="scirp.51462-formula634"><label>(2.37)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six149.png"  xlink:type="simple"/></disp-formula><p>while (2.36b) is represented by</p><disp-formula id="scirp.51462-formula635"><label>(2.38)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six150.png"  xlink:type="simple"/></disp-formula><p>These examples, while very simple to deal with, will provide good counterexamples in both Sections 3 and 4.</p></sec></sec><sec id="s3"><title>3. Deterministic Stability</title><p>In this section we shall be concerned with the deterministic drift part of the dynamics (2.17). We are interested in techniques for judging the stability of the time-homogeneous ODE (2.2), the so-called reaction rate equations implied by the rates (2.1). Stability and continuity with respect to initial data are considered in Sections 3.1 and 3.2. The main motivation for this discussion stems from the observation that assumptions that do not hold in this very basic setting are unlikely to hold in the stochastic case. In Section 3.3, techniques for explicitly obtaining all our postulated constants are discussed. A good point in favor of taking the time to describe these techniques is that we have not found such a discussion elsewhere.</p><p>Initially we will consider states<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six151.png" xlink:type="simple"/></inline-formula>, but we will soon find it convenient to restrict the treatment to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six151.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six152.png" xlink:type="simple"/></inline-formula>. In order to remain valid also in the discrete stochastic setting, however, constructed counterexamples will remain relevant also when restricted to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six151.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six152.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six153.png" xlink:type="simple"/></inline-formula>.</p><sec id="s3_1"><title>3.1. Stability</title><p>Many stability proofs can be thought of as comparisons with relevant linear cases. This is the motivation for the well-known Gr&#246;nwall’s inequality which we state in the following two versions.</p><p>Lemma 3.1. Suppose that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six154.png" xlink:type="simple"/></inline-formula> for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six154.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six155.png" xlink:type="simple"/></inline-formula>. Then</p><disp-formula id="scirp.51462-formula636"><label>(3.1)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six156.png"  xlink:type="simple"/></disp-formula><p>The same conclusion holds irrespective of the differentiability of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six157.png" xlink:type="simple"/></inline-formula> but with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six157.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six158.png" xlink:type="simple"/></inline-formula> and under the weaker integral condition</p><disp-formula id="scirp.51462-formula637"><label>(3.2)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six159.png"  xlink:type="simple"/></disp-formula><p>The most immediate way of comparing the growth of solutions to the ODE (2.2) to those of a linear ODE is to require that the norm of the driving function is bounded in terms of its argument;</p><disp-formula id="scirp.51462-formula638"><label>(3.3)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six160.png"  xlink:type="simple"/></disp-formula><p>since then by the triangle inequality,</p><disp-formula id="scirp.51462-formula639"><label>(3.4)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six161.png"  xlink:type="simple"/></disp-formula><p>where Gr&#246;nwall’s inequality applies. Unfortunately, (3.3) is a too strict requirement for our applications.</p><p>Proposition 3.2 The bi-molecular birth-death system (2.32) does not satisfy (3.3).</p><p>Proof. We compute <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six162.png" xlink:type="simple"/></inline-formula> for a state<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six162.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six163.png" xlink:type="simple"/></inline-formula>. Hence for a = b = N = 0, 1,&#183;&#183;&#183; we have for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six162.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six163.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six164.png" xlink:type="simple"/></inline-formula> large enough that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six162.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six163.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six164.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six165.png" xlink:type="simple"/></inline-formula>, which can clearly never be bounded linearly in<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six162.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six163.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six164.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six165.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six166.png" xlink:type="simple"/></inline-formula>. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six162.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six163.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six164.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six165.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six166.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six167.png" xlink:type="simple"/></inline-formula></p><p>The problem with the simple condition (3.3) is that it does not take the direction of growth into account; the offending quadratic propensity in (2.32) actually decreases the number of molecules. To deal with this, let <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six168.png" xlink:type="simple"/></inline-formula> be an arbitrary vector defining an “outward” direction. The length of the component of the driving function along this direction is <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six168.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six169.png" xlink:type="simple"/></inline-formula> and in order not to have <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six168.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six169.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six170.png" xlink:type="simple"/></inline-formula> driven too strongly out along this ray we may, in view of Gr&#246;nwall’s inequality, naturally require that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six168.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six169.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six170.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six171.png" xlink:type="simple"/></inline-formula> for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six168.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six169.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six170.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six171.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six172.png" xlink:type="simple"/></inline-formula> sufficiently large. Equivalently, for any x,</p><disp-formula id="scirp.51462-formula640"><label>(3.5)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six173.png"  xlink:type="simple"/></disp-formula><p>from which one deduces</p><disp-formula id="scirp.51462-formula641"><label>(3.6)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six174.png"  xlink:type="simple"/></disp-formula><p>where Gr&#246;nwall’s inequality applies anew. The assumption (3.5) is weaker than (3.3) since the former implies the latter by the Cauchy-Schwarz inequality. Indeed, as in the proof of Proposition 3.2 it is readily checked that for the bi-molecular birth-death system (2.32), we get <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six175.png" xlink:type="simple"/></inline-formula> which this time readily can be bounded linearly in terms of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six175.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six176.png" xlink:type="simple"/></inline-formula>.</p><p>Unfortunately, in the case of an infinite state space and strong dependencies between the species the assumption (3.5) is also often unrealistic.</p><p>Proposition 3.3 Neither (2.36a) nor (2.36b) admits a bound of the kind (3.5).</p><p>Proof. As in the proof of Proposition 3.2 we look at a ray <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six177.png" xlink:type="simple"/></inline-formula> parametrized by a non- negative integer<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six177.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six178.png" xlink:type="simple"/></inline-formula>. For (2.36a) we compute<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six177.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six178.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six179.png" xlink:type="simple"/></inline-formula>, which clearly cannot be bounded linearly in<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six177.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six178.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six179.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six180.png" xlink:type="simple"/></inline-formula>. The same argument applies also to (2.36b). <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six177.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six178.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six179.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six180.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six181.png" xlink:type="simple"/></inline-formula></p><p>This negative result can perhaps best be appreciated as a kind of loss of information about the dependencies between the species in the functional form of the condition (3.5). The number of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six182.png" xlink:type="simple"/></inline-formula>- and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six182.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six183.png" xlink:type="simple"/></inline-formula>-molecules is strongly correlated with the number of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six182.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six183.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six184.png" xlink:type="simple"/></inline-formula>-molecules such that, in fact, in (2.36a) <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six182.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six183.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six184.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six185.png" xlink:type="simple"/></inline-formula>is a preserved quantity. By contrast, in (3.5) the growth of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six182.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six183.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six184.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six185.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six186.png" xlink:type="simple"/></inline-formula> is estimated from the sum of the growth of the individual elements of x as if they where independent.</p><p>A way around this limitation can be found provided that we leave the general case<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six187.png" xlink:type="simple"/></inline-formula>. We therefore specify the discussion to the positive quadrant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six188.png" xlink:type="simple"/></inline-formula> and assume from now on that it can be shown a priori that the initial data <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six189.png" xlink:type="simple"/></inline-formula> belongs to this set and that the subsequent trajectory <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six187.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six188.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six189.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six190.png" xlink:type="simple"/></inline-formula> never leaves it (compare Assumption 2.1).</p><p>It then follows that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six191.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six191.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six192.png" xlink:type="simple"/></inline-formula> is the vector of length <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six191.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six192.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six193.png" xlink:type="simple"/></inline-formula> containing all ones. This vector also defines a suitable “outward” vector for states <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six191.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six192.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six193.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six194.png" xlink:type="simple"/></inline-formula> since solutions to the ODE (2.2) cannot grow without simultaneously growing also in the direction of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six191.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six192.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six193.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six194.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six195.png" xlink:type="simple"/></inline-formula>.</p><p>Again, in view of Gr&#246;nwall’s inequality Lemma 3.1, we tentatively require that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six196.png" xlink:type="simple"/></inline-formula> for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six196.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six197.png" xlink:type="simple"/></inline-formula> sufficiently large. Equivalently, for any<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six196.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six197.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six198.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula642"><label>(3.7)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six199.png"  xlink:type="simple"/></disp-formula><p>implying the bounded dynamics</p><disp-formula id="scirp.51462-formula643"><label>(3.8)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six200.png"  xlink:type="simple"/></disp-formula><p>We remark in passing that the criterion (3.7) is sharp in the sense that if the reversed inequality can be shown to be true, then the growth of solutions can be estimated from below.</p><p>Example 3.1 As a point in favor of this approach we compute for the bi-molecular birth-death system (2.32), <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six201.png" xlink:type="simple"/></inline-formula>which evidently falls under the assumption (3.7) with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six202.png" xlink:type="simple"/></inline-formula>. For the reversible case (2.36a) we similarly get <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six202.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six203.png" xlink:type="simple"/></inline-formula> such that (3.7) applies with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six202.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six203.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six204.png" xlink:type="simple"/></inline-formula>. Finally, and in the same fashion, the open case (2.36b) is seen to be covered by letting<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six201.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six202.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six203.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six204.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six205.png" xlink:type="simple"/></inline-formula>.</p><p>The chosen “outward” vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six206.png" xlink:type="simple"/></inline-formula> is by no means special. Clearly, any strictly positive vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six206.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six207.png" xlink:type="simple"/></inline-formula> may be used in its place since <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six206.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six207.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six208.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six206.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six207.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six208.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six209.png" xlink:type="simple"/></inline-formula> are equivalent norms over<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six206.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six207.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six208.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six209.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six210.png" xlink:type="simple"/></inline-formula>. This is a general and useful observation as it may be used to discard parts of a system that are closed without any restrictions on the associated propensities.</p><p>Example 3.2 For the reversible system (2.36a), we have already noted that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six211.png" xlink:type="simple"/></inline-formula> is a conserved quantity such that the choice <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six211.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six212.png" xlink:type="simple"/></inline-formula> yields<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six211.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six212.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six213.png" xlink:type="simple"/></inline-formula>. The open case (2.36b) also benefits from this weighted norm in that we get<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six211.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six212.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six213.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six214.png" xlink:type="simple"/></inline-formula>.</p><p>Example 3.3 A slightly more involved model reads as follows:</p><disp-formula id="scirp.51462-formula644"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six215.png"  xlink:type="simple"/></disp-formula><p>This example has been constructed such that the quadratic reaction increases <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six216.png" xlink:type="simple"/></inline-formula> and hence (3.7) does not apply. However, taking <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six216.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six217.png" xlink:type="simple"/></inline-formula> we get</p><disp-formula id="scirp.51462-formula645"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six218.png"  xlink:type="simple"/></disp-formula><p>This example hints at a general technique for obtaining suitable candidates for the weight vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six219.png" xlink:type="simple"/></inline-formula>. Simply form the matrix <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six219.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six220.png" xlink:type="simple"/></inline-formula> consisting of the columns of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six219.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six220.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six221.png" xlink:type="simple"/></inline-formula> that are affected by superlinear propensities. If a vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six219.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six220.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six221.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six222.png" xlink:type="simple"/></inline-formula> annihilating these propensities exists, it can be found in the null-space of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six219.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six220.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six221.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six222.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six223.png" xlink:type="simple"/></inline-formula>, readily available by linear algebra techniques. We omit the details.</p></sec><sec id="s3_2"><title>3.2. Continuity</title><p>For well-posedness of the ODE (2.2) we also need continuity with respect to the initial data. We cannot ask for uniform Lipschitz continuity since <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six224.png" xlink:type="simple"/></inline-formula> clearly implies (3.3) which we have already refuted. For the same reason, a uniform one-sided Lipschitz condition <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six224.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six225.png" xlink:type="simple"/></inline-formula> cannot be assumed to hold since it implies (3.5). The problem here is the global nature of the estimate and it therefore seems to be reasonable to localize this assumption. For instance, one might ask for</p><disp-formula id="scirp.51462-formula646"><label>(3.9)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six226.png"  xlink:type="simple"/></disp-formula><p>presumably with some growth restrictions on<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six227.png" xlink:type="simple"/></inline-formula>. Although very general, such an analysis is likely to be less informative when it comes to estimating actual constants in later results. We shall therefore consider the following simpler version,</p><disp-formula id="scirp.51462-formula647"><label>(3.10)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six228.png"  xlink:type="simple"/></disp-formula><p>where the form of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six229.png" xlink:type="simple"/></inline-formula> has been restricted to better suit the present purposes. Trivially, the norms <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six230.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six230.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six231.png" xlink:type="simple"/></inline-formula> are equivalent and hence the specific choice made in (3.10) is just a matter of convenience. Since the idea here is to use a priori bounds on <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six230.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six231.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six232.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six230.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six231.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six232.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six233.png" xlink:type="simple"/></inline-formula> when deriving perturbation bounds, using <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six230.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six231.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six232.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six233.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six234.png" xlink:type="simple"/></inline-formula> (or<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six229.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six230.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six231.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six232.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six233.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six234.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six235.png" xlink:type="simple"/></inline-formula>) is natural.</p><p>Theorem 3.4 Suppose that the ODE (2.2) satisfies (3.7) and (3.10) and that initial data <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six236.png" xlink:type="simple"/></inline-formula> implies a solution<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six237.png" xlink:type="simple"/></inline-formula>. Then for any <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six238.png" xlink:type="simple"/></inline-formula> there is a unique such solution<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six239.png" xlink:type="simple"/></inline-formula>. Moreover, define<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six239.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six240.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six239.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six240.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six241.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six239.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six240.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six241.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six242.png" xlink:type="simple"/></inline-formula> are two trajectories associated with initial data<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six236.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six237.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six238.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six239.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six240.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six241.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six242.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six243.png" xlink:type="simple"/></inline-formula>, respectively. Then</p><disp-formula id="scirp.51462-formula648"><label>(3.11)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six244.png"  xlink:type="simple"/></disp-formula><p>Proof. Combining (3.7) with Gr&#246;nwall’s inequality we get the a priori estimate</p><disp-formula id="scirp.51462-formula649"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six245.png"  xlink:type="simple"/></disp-formula><p>Hence the (bounded) solution to</p><disp-formula id="scirp.51462-formula650"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six246.png"  xlink:type="simple"/></disp-formula><p>is readily found through its integrating factor. The order estimate is a consequence of the fact that</p><disp-formula id="scirp.51462-formula651"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six247.png"  xlink:type="simple"/></disp-formula><p>since the trajectory is continuous. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six248.png" xlink:type="simple"/></inline-formula></p></sec><sec id="s3_3"><title>3.3. Bounds for Elementary Reactions</title><p>As briefly discussed by the end of Section 3.1, finding bounds on A and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six249.png" xlink:type="simple"/></inline-formula> in (3.7) as well as a suitable weight-vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six249.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six250.png" xlink:type="simple"/></inline-formula> amounts to basic inequalities and some fairly straightforward linear algebra manipulations. In this section we therefore consider precise bounds in (3.10) for the elementary propensities (2.3). Since (3.10) is linear in<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six249.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six250.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six251.png" xlink:type="simple"/></inline-formula>, a reasonable approach is to consider linear and quadratic propensities separate (constant propensities trivially satisfy (3.10) with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six249.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six250.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six251.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six252.png" xlink:type="simple"/></inline-formula>).</p><p>Proposition 3.5 (linear case) Write a set of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six253.png" xlink:type="simple"/></inline-formula> linear propensities as<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six253.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six254.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six253.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six255.png" xlink:type="simple"/></inline-formula>, each with the corresponding stoichiometric vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six253.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six256.png" xlink:type="simple"/></inline-formula>. Then <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six253.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six254.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six255.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six256.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six257.png" xlink:type="simple"/></inline-formula> satisfies</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six258.png" xlink:type="simple"/></inline-formula>with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six259.png" xlink:type="simple"/></inline-formula> in terms of the Euclidean logarithmic norm <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six258.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six259.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six260.png" xlink:type="simple"/></inline-formula></p><p>and the matrix <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six261.png" xlink:type="simple"/></inline-formula> containing the vectors <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six262.png" xlink:type="simple"/></inline-formula> as columns. In particular, in the case of a single linear propensity and, if as is usually the case, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six262.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six263.png" xlink:type="simple"/></inline-formula>is all-zero except for a single rate constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six262.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six263.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six264.png" xlink:type="simple"/></inline-formula> in the nth position, then this reduces to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six261.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six262.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six263.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six264.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six265.png" xlink:type="simple"/></inline-formula>.</p><p>Proof. The first assertion is immediate since the smallest such constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six266.png" xlink:type="simple"/></inline-formula> by definition is the logarithmic norm (see e.g. [<xref ref-type="bibr" rid="scirp.51462-ref32">32</xref>] ). To compute <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six266.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six267.png" xlink:type="simple"/></inline-formula> when <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six266.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six267.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six268.png" xlink:type="simple"/></inline-formula> has the form indicated, we determine the extremal eigenvalue of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six266.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six267.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six268.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six269.png" xlink:type="simple"/></inline-formula>. By the (signed) scaling invariance of the logarithmic norm we may without loss of generality take<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six266.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six267.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six268.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six269.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six270.png" xlink:type="simple"/></inline-formula>. The spectral relation for an eigenpair <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six266.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six267.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six268.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six269.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six270.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six271.png" xlink:type="simple"/></inline-formula> can be written as</p><disp-formula id="scirp.51462-formula652"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six272.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.51462-formula653"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six273.png"  xlink:type="simple"/></disp-formula><p>For non-zero <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six274.png" xlink:type="simple"/></inline-formula> the first relation can be solved for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six274.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six275.png" xlink:type="simple"/></inline-formula>. When inserted into the second relation, using that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six274.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six275.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six276.png" xlink:type="simple"/></inline-formula> (or otherwise<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six274.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six275.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six276.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six277.png" xlink:type="simple"/></inline-formula>), we get a quadratic equation for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six274.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six275.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six276.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six277.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six278.png" xlink:type="simple"/></inline-formula> with a single extremal root. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six274.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six275.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six276.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six277.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six278.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six279.png" xlink:type="simple"/></inline-formula></p><p>Example 3.4 The simple special case in Proposition 3.5 is generally sharp except for when there are linear reactions affecting all species considered in the model. For example, in a one-dimensional state space, the single decay <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six280.png" xlink:type="simple"/></inline-formula> with propensity <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six281.png" xlink:type="simple"/></inline-formula> allows the optimal value<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six281.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six282.png" xlink:type="simple"/></inline-formula>. In general <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six281.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six282.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six283.png" xlink:type="simple"/></inline-formula>-dimensional space, a chain with unit rate constants of the form<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six281.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six282.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six283.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six284.png" xlink:type="simple"/></inline-formula>, or a closed loop in which the last transition is replaced with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six281.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six282.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six283.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six284.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six285.png" xlink:type="simple"/></inline-formula>, both admit bounds <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six281.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six282.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six283.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six284.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six285.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six286.png" xlink:type="simple"/></inline-formula> as an inspection of the Gershgorin-discs of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six280.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six281.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six282.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six283.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six284.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six285.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six286.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six287.png" xlink:type="simple"/></inline-formula> shows.</p><p>Other than for those special examples, for the most important linear cases, <xref ref-type="table" rid="table1">Table 1</xref> summarizes the bounds as obtained from the special case in Proposition 3.5 (with all reaction constants normalized to unity).</p><p>Proposition 3.6 (quadratic case). Write a general quadratic propensity as <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six288.png" xlink:type="simple"/></inline-formula> with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six288.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six289.png" xlink:type="simple"/></inline-formula> a symmetric matrix. Then <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six288.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six289.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six290.png" xlink:type="simple"/></inline-formula> satisfies (3.10) with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six288.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six289.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six290.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six291.png" xlink:type="simple"/></inline-formula> and</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six292.png" xlink:type="simple"/></inline-formula>. For the special case that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six292.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six293.png" xlink:type="simple"/></inline-formula> there holds<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six292.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six293.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six294.png" xlink:type="simple"/></inline-formula>.</p><p>Proof. Since <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six295.png" xlink:type="simple"/></inline-formula> is symmetric we have<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six295.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six296.png" xlink:type="simple"/></inline-formula>. Hence an explicit expression for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six295.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six296.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six297.png" xlink:type="simple"/></inline-formula> is obtained as follows:</p><disp-formula id="scirp.51462-formula654"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six298.png"  xlink:type="simple"/></disp-formula><p>The indicated upper bound is derived from the fact that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six299.png" xlink:type="simple"/></inline-formula> [<xref ref-type="bibr" rid="scirp.51462-ref32">32</xref>] . For the useful special case, define first the vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six299.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six300.png" xlink:type="simple"/></inline-formula> in terms of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six299.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six300.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six301.png" xlink:type="simple"/></inline-formula>, and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six299.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six300.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six301.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six302.png" xlink:type="simple"/></inline-formula>. Using the fact that the logarithmic norm is sub-additive we can reuse the calculation in the proof of Proposition 3.5,</p><disp-formula id="scirp.51462-formula655"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six304.png"  xlink:type="simple"/></disp-formula><p>Example 3.5 The most important quadratic cases are summarized in <xref ref-type="table" rid="table2">Table 2</xref>. For the dimerizations in the lower half of the table there is also a linear part <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six305.png" xlink:type="simple"/></inline-formula> in (3.10).</p><p>Example 3.6 The bi-molecular birth-death model (2.32) admits the constants <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six306.png" xlink:type="simple"/></inline-formula> in (3.10). Similarly, the reversible cases (2.36a) and (2.36b) both obeys (3.10) with</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six307.png" xlink:type="simple"/></inline-formula>. All these results are sharp except for the open case (2.36b) for which one can</p><p>obtain a slightly smaller constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six308.png" xlink:type="simple"/></inline-formula> by using the general formula stated in Proposition 3.5.</p><p>Example 3.7 As a highly prototypical example we consider the following natural extension of the bi- molecular birth-death model (2.32),</p><disp-formula id="scirp.51462-formula656"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six309.png"  xlink:type="simple"/></disp-formula><p>where in this example it is informative to consider the dependence on the system’s size<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula>. It is straightforward to show the bounds <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six311.png" xlink:type="simple"/></inline-formula> in (3.7) and hence that the system is effectively bounded despite being of open character. This is seen from the fact that, for states<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six311.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six312.png" xlink:type="simple"/></inline-formula>, the dynamics is dissipative in the <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six311.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six312.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six313.png" xlink:type="simple"/></inline-formula>-norm. Furthermore, from Proposition 3.5 and 3.6 we get the sharp bounds <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six311.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six312.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six313.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six314.png" xlink:type="simple"/></inline-formula> in (3.10). It follows that for states <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six311.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six312.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six313.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six314.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six315.png" xlink:type="simple"/></inline-formula> such that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six311.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six312.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six313.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six314.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six315.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six316.png" xlink:type="simple"/></inline-formula>, the dynamics is contractive in the Euclidean norm. For density dependent propensities we expect that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six311.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six312.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six313.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six314.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six315.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six316.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six317.png" xlink:type="simple"/></inline-formula> in any norm as <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six310.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six311.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six312.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six313.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six314.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six315.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six316.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six317.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six318.png" xlink:type="simple"/></inline-formula> grows, and hence the region of contractivity grows in a relative sense. Intuitively one expects that these results offer an insight into the evolution of the process that is relevant also in the stochastic setting.</p></sec></sec><sec id="s4"><title>4. Stochastic Stability</title><p>We now consider the properties of the stochastic jump SDE (2.16). For convenience we start by collecting all assumptions in Section 4.1. In the stochastic setting the requirements for existence and uniqueness are slightly stronger than in the deterministic case such that the one-sided bound (3.10) needs to be augmented with an</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Linear propensities and bounds of M in (3.10)</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Reaction</th><th align="center" valign="middle" >Bound on <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six319.png" xlink:type="simple"/></inline-formula></th></tr></thead><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six320.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six321.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six322.png" xlink:type="simple"/></inline-formula></td></tr><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six323.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six324.png" xlink:type="simple"/></inline-formula></td></tr></tbody></table></table-wrap><table-wrap id="table2" ><label><xref ref-type="table" rid="table2">Table 2</xref></label><caption><title> Quadratic propensities and bounds of M, μ in (3.10)</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Reaction</th><th align="center" valign="middle" >Bound on <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six325.png" xlink:type="simple"/></inline-formula></th><th align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six326.png" xlink:type="simple"/></inline-formula></th></tr></thead><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six327.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six328.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six329.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six330.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six331.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six332.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six333.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six334.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six335.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >2</td></tr><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six336.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six337.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six338.png" xlink:type="simple"/></inline-formula></td></tr></tbody></table></table-wrap><p>unsigned version, implying essentially the assumption of at most quadratically growing propensities. We demonstrate that this assumption is reasonable by constructing a model involving cubic propensities and with unbounded second moments. On the positive side we show in Section 4.2 that the assumptions are strong enough to guarantee finite moments of any order during finite time intervals.</p><p>We prove existence and uniqueness of solutions to the jump SDE (2.16) in Section 4.3. A sufficient condition for the existence of asymptotic bounds of the pth order moment is given in Section 4.4 where we also derive some stability estimates.</p><sec id="s4_1"><title>4.1. Working Assumptions</title><p>We state formally the set of assumptions on the jump SDE (14) as follows.</p><p>Assumption 4.9 For arguments<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six339.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six339.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six340.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six339.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six340.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six341.png" xlink:type="simple"/></inline-formula>, and weighted norm <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six339.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six340.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six341.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six342.png" xlink:type="simple"/></inline-formula> we assume that</p><p>(1) <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six343.png" xlink:type="simple"/></inline-formula>(“bounded growth”),</p><p>(2) <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six344.png" xlink:type="simple"/></inline-formula>(“absolutely bounded growth”),</p><p>(3)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six345.png" xlink:type="simple"/></inline-formula>,</p><p>(4)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six346.png" xlink:type="simple"/></inline-formula>.</p><p>The parameters <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six347.png" xlink:type="simple"/></inline-formula> are assumed to be positive (with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six347.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six348.png" xlink:type="simple"/></inline-formula> possibly zero) but we allow also negative values of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six347.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six348.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six349.png" xlink:type="simple"/></inline-formula>. The vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six347.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six348.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six349.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six350.png" xlink:type="simple"/></inline-formula> is normalized such that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six347.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six348.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six349.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six350.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six351.png" xlink:type="simple"/></inline-formula>; hence the bound <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six347.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six348.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six349.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six350.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six351.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six352.png" xlink:type="simple"/></inline-formula> is sharp.</p><p>After the original draft of the current paper was finished, the author became aware of two other papers discussing very similar conditions [<xref ref-type="bibr" rid="scirp.51462-ref33">33</xref>] [<xref ref-type="bibr" rid="scirp.51462-ref34">34</xref>] . In particular, Assumption 4.1 (1), (2) are also found in ( [<xref ref-type="bibr" rid="scirp.51462-ref33">33</xref>] , Condition (1). In fact, these very conditions can be shown to be exactly what is needed to apply the earlier and quite general theory found in ( [<xref ref-type="bibr" rid="scirp.51462-ref35">35</xref>] , Theorem 7.1).</p><p>In Assumption 4.9 (2) the case <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six353.png" xlink:type="simple"/></inline-formula> will merit special attention. For well-posedness it turns out that we will need to require a higher regularity of the initial data when <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six354.png" xlink:type="simple"/></inline-formula> (see Theorem 4.7) and the condition for ergodicity becomes more restrictive (see Theorem 4.9). In practice, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six353.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six354.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six355.png" xlink:type="simple"/></inline-formula>implies that opposing quadratic reactions of the type</p><disp-formula id="scirp.51462-formula657"><label>(4.1)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six356.png"  xlink:type="simple"/></disp-formula><p>are impossible. Similarly, when <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six357.png" xlink:type="simple"/></inline-formula> reactions of the type</p><disp-formula id="scirp.51462-formula658"><label>(4.2)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six358.png"  xlink:type="simple"/></disp-formula><p>are excluded.</p><p>Note that (2) and (4) are redundant in the sense that they are both implied by (3). However, as we saw in Section 3.3, in (4) it is often possible to find sharper constants <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six359.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six359.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six360.png" xlink:type="simple"/></inline-formula> by considering this bound in isolation. Also, although (3) is stronger than (4), it is in particular valid for quadratic propensities as can be seen from the representation used in the proof of Proposition 3.6,</p><disp-formula id="scirp.51462-formula659"><label>(4.3)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six361.png"  xlink:type="simple"/></disp-formula>The Danger with Cubic Propensities<p>Assumption 4.1 (2) specifies the discussion to propensities with at most quadratic growth, at least when measured in the direction of the weight vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six362.png" xlink:type="simple"/></inline-formula>. To show that this is natural we now demonstrate that additional care should be taken when considering cubic propensities.</p><p>Example 4.2 Consider the model</p><disp-formula id="scirp.51462-formula660"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six363.png"  xlink:type="simple"/></disp-formula><p>such that the stoichiometric vector is given by<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six364.png" xlink:type="simple"/></inline-formula>, and hence that the drift<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six364.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six365.png" xlink:type="simple"/></inline-formula>.</p><p>Proposition 4.1 For the model in Example 4.2, if<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six366.png" xlink:type="simple"/></inline-formula>, then the second moment explodes in finite time.</p><p>Proof. Assume that both the second and the third moment are bounded for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six367.png" xlink:type="simple"/></inline-formula> with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six367.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six368.png" xlink:type="simple"/></inline-formula>. From (2.7) we get the governing equation</p><disp-formula id="scirp.51462-formula661"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six369.png"  xlink:type="simple"/></disp-formula><p>such that the growth of the second moment remains bounded only provided that the third moment remains finite. It is convenient to look at the cumulative third order moment. From (2.7),</p><disp-formula id="scirp.51462-formula662"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six370.png"  xlink:type="simple"/></disp-formula><p>By the arithmetic-geometric mean inequality, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six371.png" xlink:type="simple"/></inline-formula>, such that by Jensen’s inequality,</p><disp-formula id="scirp.51462-formula663"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six372.png"  xlink:type="simple"/></disp-formula><p>We put <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six373.png" xlink:type="simple"/></inline-formula> and get the differential inequality</p><disp-formula id="scirp.51462-formula664"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six374.png"  xlink:type="simple"/></disp-formula><p>which can be integrated and rearranged to produce the bound</p><disp-formula id="scirp.51462-formula665"><label>(4.4)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six375.png"  xlink:type="simple"/></disp-formula><p>Hence the third, and consequently also the second moment explode for some finite <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six376.png" xlink:type="simple"/></inline-formula> whenever<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six376.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six377.png" xlink:type="simple"/></inline-formula>. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six376.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six377.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six378.png" xlink:type="simple"/></inline-formula></p><p>Interestingly, we note that if<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six379.png" xlink:type="simple"/></inline-formula>, then the probability that the cubic decay transition occurs first is<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six379.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six380.png" xlink:type="simple"/></inline-formula>, and if this happens the state of the system will be stuck with a single molecule indefinitely.</p></sec><sec id="s4_2"><title>4.2. Moment Bounds</title><p>In this section we consider general moment bounds derived from (2.20) using localization. To get some guidance, let us first assume that the differential form of Dynkin’s formula (2.7) is valid. Since any trajectory <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six381.png" xlink:type="simple"/></inline-formula> by the basic Assumption 2.1 will belong to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six382.png" xlink:type="simple"/></inline-formula>, we may use that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six383.png" xlink:type="simple"/></inline-formula>. Hence from (2.7) with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six381.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six382.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six383.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six384.png" xlink:type="simple"/></inline-formula> we get that</p><disp-formula id="scirp.51462-formula666"><label>(4.5)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six385.png"  xlink:type="simple"/></disp-formula><p>by Assumption 4.1 (1). Clearly, the differential form of Gr&#246;nwall’s inequality in Lemma 3.1 applies here. A correct version of this argument unfortunately looses the sign of<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six386.png" xlink:type="simple"/></inline-formula>.</p><p>Proposition 4.2 If Assumption 4.1 (1) is true, then</p><disp-formula id="scirp.51462-formula667"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six387.png"  xlink:type="simple"/></disp-formula><p>where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six388.png" xlink:type="simple"/></inline-formula>.</p><p>Here and below we shall make use of the stopping time <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six389.png" xlink:type="simple"/></inline-formula> and define<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six389.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six390.png" xlink:type="simple"/></inline-formula>.</p><p>Proof. From (2.20) with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six391.png" xlink:type="simple"/></inline-formula> we get that</p><disp-formula id="scirp.51462-formula668"><label>(4.6)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six392.png"  xlink:type="simple"/></disp-formula><p>By the integral form of Gr&#246;nwall’s inequality in Lemma 3.1 we deduce in terms of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six393.png" xlink:type="simple"/></inline-formula> that</p><disp-formula id="scirp.51462-formula669"><label>(4.7)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six394.png"  xlink:type="simple"/></disp-formula><p>such that the same bound holds for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six395.png" xlink:type="simple"/></inline-formula> by letting<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six395.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six396.png" xlink:type="simple"/></inline-formula>. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six395.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six396.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six397.png" xlink:type="simple"/></inline-formula></p><p>We attempt a similar treatment for obtaining bounds in mean square. Assuming tactically that (2.7) is valid, writing <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six398.png" xlink:type="simple"/></inline-formula> we get after some work that</p><disp-formula id="scirp.51462-formula670"><label>(4.8)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six399.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six400.png" xlink:type="simple"/></inline-formula> We expect from Gr&#246;nwall’s inequality that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six400.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six401.png" xlink:type="simple"/></inline-formula> grows at most exponentially with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six400.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six401.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six402.png" xlink:type="simple"/></inline-formula> whenever</p><disp-formula id="scirp.51462-formula671"><label>(4.9)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six403.png"  xlink:type="simple"/></disp-formula><p>However, this tentative condition is often violated in practice since the second term<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six404.png" xlink:type="simple"/></inline-formula>, and since we already know from Proposition 3.3 that this quantity does not admit bounds in terms of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six404.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six405.png" xlink:type="simple"/></inline-formula> even for very simple problems.</p><p>More realistic conditions arise when seeking to bound <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six406.png" xlink:type="simple"/></inline-formula> instead.</p><p>Proposition 4.3 If for some constants <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six407.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six407.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six408.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula672"><label>(4.10)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six409.png"  xlink:type="simple"/></disp-formula><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six410.png" xlink:type="simple"/></inline-formula>understood elementwise), then<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six410.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six411.png" xlink:type="simple"/></inline-formula>.</p><p>The proof of Proposition 4.3 follows the same pattern as for Proposition 4.2, but using this time</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six412.png" xlink:type="simple"/></inline-formula>in (2.20). The condition (4.10) is typically more realistic than (4.9) since we recognize the term<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six412.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six413.png" xlink:type="simple"/></inline-formula>, which under the evidently reasonable Assumption 4.1 (1) is<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six412.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six413.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six414.png" xlink:type="simple"/></inline-formula>. It follows that if <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six412.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six413.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six414.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six415.png" xlink:type="simple"/></inline-formula> grows at most quadratically with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six412.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six413.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six414.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six415.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six416.png" xlink:type="simple"/></inline-formula>, then this assumption is sufficient to yield bounds in mean square. Stated formally,</p><p>Proposition 4.4 Under Assumption 4.1 (1) and (2) the condition (4.10) of Proposition 4.3 is true with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six417.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six417.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six418.png" xlink:type="simple"/></inline-formula>.</p><p>Proof. This is straightforward: we get by the assumptions and H&#246;lder’s inequality,</p><disp-formula id="scirp.51462-formula673"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six419.png"  xlink:type="simple"/></disp-formula><p>where an application of Young’s inequality yields the indicated bounds. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six420.png" xlink:type="simple"/></inline-formula></p><p>As a strong point in favor of our running assumptions we now demonstrate that the above reasoning can be generalized: these two conditions implies finite time stability in any order moment. We note that in a recent manuscript [<xref ref-type="bibr" rid="scirp.51462-ref34">34</xref>] , related conditions for the same results are proposed.</p><p>Theorem 4.5 (Moment estimate). Under Assumption 4.1 (1) and (2), for any integer<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six421.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula674"><label>(4.11)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six422.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six423.png" xlink:type="simple"/></inline-formula> is a constant depending on the assumptions and on<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six423.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six424.png" xlink:type="simple"/></inline-formula>.</p><p>The proof of Theorem 4.5 and some later results will simplify using the following bound.</p><p>Lemma 4.6 Let <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six425.png" xlink:type="simple"/></inline-formula> with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six425.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six426.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six425.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six426.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six427.png" xlink:type="simple"/></inline-formula>. Then for integer <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six425.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six426.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six427.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six428.png" xlink:type="simple"/></inline-formula> we have the bounds</p><disp-formula id="scirp.51462-formula675"><label>(4.12)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six429.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.51462-formula676"><label>(4.13)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six430.png"  xlink:type="simple"/></disp-formula><p>Proof. Both results follow from Taylor expansions;</p><disp-formula id="scirp.51462-formula677"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six431.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.51462-formula678"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six432.png"  xlink:type="simple"/></disp-formula><p>respectively, where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six433.png" xlink:type="simple"/></inline-formula>. Using the triangle inequality and the elementary inequality <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six433.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six434.png" xlink:type="simple"/></inline-formula> the lemma is proved. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six433.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six434.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six435.png" xlink:type="simple"/></inline-formula></p><p>Proof of Theorem 4.5. Using (2.20) with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six436.png" xlink:type="simple"/></inline-formula> we get</p><disp-formula id="scirp.51462-formula679"><label>(4.14)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six437.png"  xlink:type="simple"/></disp-formula><p>Using Lemma 4.6 (4.12) and Assumption 4.1 (1) and (2) we obtain</p><disp-formula id="scirp.51462-formula680"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six438.png"  xlink:type="simple"/></disp-formula><p>where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six439.png" xlink:type="simple"/></inline-formula>. Expanding and using Young’s inequality with exponents <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six439.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six440.png" xlink:type="simple"/></inline-formula> and conjugate exponents<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six439.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six440.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six441.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula681"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six442.png"  xlink:type="simple"/></disp-formula><p>for some constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six443.png" xlink:type="simple"/></inline-formula> which thus depends on the assumptions. Applying Gr&#246;nwall’s inequality and letting <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six443.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six444.png" xlink:type="simple"/></inline-formula> we obtain the stated result.</p></sec><sec id="s4_3"><title>4.3. Existence and Uniqueness</title><p>We shall now prove that the jump SDE (2.16) under Assumption 4.1 has a uniquely defined and locally bounded solution. To this end and following ( [<xref ref-type="bibr" rid="scirp.51462-ref8">8</xref>] , Section 3.1.2), we introduce the following spaces of path-wise locally bounded processes:</p><disp-formula id="scirp.51462-formula682"><label>(4.15)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six445.png"  xlink:type="simple"/></disp-formula><p>Theorem 4.7 (Existence). Let <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six446.png" xlink:type="simple"/></inline-formula> be a solution to (2.16) under Assumption 4.1 (1) and (2) with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six446.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six447.png" xlink:type="simple"/></inline-formula>.</p><p>Then if<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six448.png" xlink:type="simple"/></inline-formula>,<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six448.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six449.png" xlink:type="simple"/></inline-formula>. If <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six448.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six449.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six450.png" xlink:type="simple"/></inline-formula> then the conclusion remains under the additional</p><p>requirement that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six451.png" xlink:type="simple"/></inline-formula>.</p><p>Proof. Below we let <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six452.png" xlink:type="simple"/></inline-formula> denote a positive constant which may be different on each occasion used. As before we use the stopping time <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six452.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six453.png" xlink:type="simple"/></inline-formula> and put<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six452.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six453.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six454.png" xlink:type="simple"/></inline-formula>. We get from It&#244;’s formula (with G defined in (4.14))</p><disp-formula id="scirp.51462-formula683"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six455.png"  xlink:type="simple"/></disp-formula><p>Since the propensities are bounded for bounded arguments (Assumption 2.1), using the stopping time we find that the jump part is absolutely integrable and hence a local martingale<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six456.png" xlink:type="simple"/></inline-formula>. We estimate its quadratic variation under Assumption 4.1 (2),</p><disp-formula id="scirp.51462-formula684"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six457.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.51462-formula685"><label>(4.16)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six458.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.51462-formula686"><label>(4.17)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six459.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.51462-formula687"><label>(4.18)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six460.png"  xlink:type="simple"/></disp-formula><p>where<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six461.png" xlink:type="simple"/></inline-formula>. In (4.16) Lemma 4.6 (4.13) was applied and Assumption 4.1 (2) entered in (4.17). Assume</p><p>first that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six462.png" xlink:type="simple"/></inline-formula>. Then for the drift part we have already constructed a suitable bound in Theorem 4.5 such that</p><disp-formula id="scirp.51462-formula688"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six463.png"  xlink:type="simple"/></disp-formula><p>Taking supremum and expectation values we get from Burkholder’s inequality ( [<xref ref-type="bibr" rid="scirp.51462-ref6">6</xref>] , Chap. IV.4) that</p><disp-formula id="scirp.51462-formula689"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six464.png"  xlink:type="simple"/></disp-formula><p>Writing <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six465.png" xlink:type="simple"/></inline-formula> we conclude that</p><disp-formula id="scirp.51462-formula690"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six466.png"  xlink:type="simple"/></disp-formula><p>By Gr&#246;nwall’s inequality we have thus shown that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six467.png" xlink:type="simple"/></inline-formula> can be bounded in terms of the initial data and time<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six467.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six468.png" xlink:type="simple"/></inline-formula>. The result now follows by letting <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six467.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six468.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six469.png" xlink:type="simple"/></inline-formula> and using Fatou’s lemma.</p><p>Next assume that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six470.png" xlink:type="simple"/></inline-formula>. Then we have to rely more directly on Theorem 4.5 in (4.18),</p><disp-formula id="scirp.51462-formula691"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six471.png"  xlink:type="simple"/></disp-formula><p>where, although there is now a dependency on<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six472.png" xlink:type="simple"/></inline-formula>, the rest of the argument carries through.</p><p>For the case that the initial data <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six473.png" xlink:type="simple"/></inline-formula> is non-deterministic we see that the general quadratic case Assumption 4.1 (2) with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six473.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six474.png" xlink:type="simple"/></inline-formula> requires a one order higher moment of the initial data in order for a solution in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six473.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six474.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six475.png" xlink:type="simple"/></inline-formula> to exist.</p><p>Theorem 4.8 (Uniqueness) Let Assumption 4.1 (1)-(4) hold true. Then any two paths <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six476.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six476.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six477.png" xlink:type="simple"/></inline-formula> coupled according to the description in Section 2.2.2 with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six476.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six477.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six478.png" xlink:type="simple"/></inline-formula> are equal.</p><p>We shall be using the observation that, for<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six479.png" xlink:type="simple"/></inline-formula>, we have that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six479.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six480.png" xlink:type="simple"/></inline-formula> (referred below to as the “integer inequality”).</p><p>Proof. Under the same stopping time as before we get from It&#244;’s formula using the coupling described in Section 2.2.2 that</p><disp-formula id="scirp.51462-formula692"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six481.png"  xlink:type="simple"/></disp-formula><p>From the integer inequality we find that there is a constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six482.png" xlink:type="simple"/></inline-formula> depending on <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six482.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six483.png" xlink:type="simple"/></inline-formula> such that</p><disp-formula id="scirp.51462-formula693"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six484.png"  xlink:type="simple"/></disp-formula><p>Using that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six485.png" xlink:type="simple"/></inline-formula> and Gr&#246;nwall’s inequality we conclude that the only solution is the zero solution. Letting <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six485.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six486.png" xlink:type="simple"/></inline-formula> and using Fatou’s lemma the statement is therefore proved. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six485.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six486.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six487.png" xlink:type="simple"/></inline-formula></p><p>In a certain sense the previous result is trivial; from the Poisson representation (2.8) we see that up to the first explosion, a path is uniquely determined from an initial state and a series of Poisson distributed events. However, and as we shall see below, the above proof is prototypical for more involved situations. An example would be when devising hybrid approximations in continuous state space. Indeed, in the above proof, note that if the integer inequality did not hold we would naturally have to rely on the Cauchy-Schwartz inequality instead. With <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six488.png" xlink:type="simple"/></inline-formula> this leads to bounds of the typical kind</p><disp-formula id="scirp.51462-formula694"><label>(4.20)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six489.png"  xlink:type="simple"/></disp-formula><p>for which <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six490.png" xlink:type="simple"/></inline-formula> is an admissible solution. This observation shows that the integer inequality as used in the proof is crucial; without it the integral inequality (4.19) admits growing solutions.</p></sec><sec id="s4_4"><title>4.4. Stability</title><p>Although Theorem 4.5 shows that any moments are bounded in finite time, a relevant question from the modeling point of view is whether the first few moments remain bounded indefinitely. We give a result to this effect which relies on the existence of solutions in <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six491.png" xlink:type="simple"/></inline-formula> which implies that the differential form (2.7) of Dynkin’s formula may be used (cf. Corollary 2.2) such that in turn the differential Gr&#246;nwall inequality applies. We mention anew that a very similar result has recently appeared in ( [<xref ref-type="bibr" rid="scirp.51462-ref33">33</xref>] , Theorem 2).</p><p>Theorem 4.9 (Ergodicity) Under Assumption 4.1 (1), (2), suppose that</p><disp-formula id="scirp.51462-formula695"><label>(4.21)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six492.png"  xlink:type="simple"/></disp-formula><p>Then for integer<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six493.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six494.png" xlink:type="simple"/></inline-formula>remains bounded as<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six493.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six494.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six495.png" xlink:type="simple"/></inline-formula>.</p><p>Proof. The case <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six496.png" xlink:type="simple"/></inline-formula> is slightly more complicated to obtain so we shall concentrate on this. We omit the case <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six496.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six497.png" xlink:type="simple"/></inline-formula> since it follows from (4.5) under the present assumptions. The idea of the proof is to asymptotically</p><p>bound <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six498.png" xlink:type="simple"/></inline-formula> with a certain positive constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six498.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six499.png" xlink:type="simple"/></inline-formula> to be decided upon below. By (2.7) we get with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six498.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six499.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six500.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula696"><label>(4.22)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six501.png"  xlink:type="simple"/></disp-formula><p>by Taylor’s formula for some<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six502.png" xlink:type="simple"/></inline-formula>. Using the assumptions we get the bound</p><disp-formula id="scirp.51462-formula697"><label>(4.23)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six503.png"  xlink:type="simple"/></disp-formula><p>For the first term in (4.23) we get from the scaled Young’s inequality with exponent <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six504.png" xlink:type="simple"/></inline-formula> and conjugate exponent <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six504.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six505.png" xlink:type="simple"/></inline-formula> that</p><disp-formula id="scirp.51462-formula698"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six506.png"  xlink:type="simple"/></disp-formula><p>for some<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six507.png" xlink:type="simple"/></inline-formula>. As for the second term in (4.23) we first estimate for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six507.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six508.png" xlink:type="simple"/></inline-formula></p><disp-formula id="scirp.51462-formula699"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six509.png"  xlink:type="simple"/></disp-formula><p>Next by the arithmetic-geometric mean inequality we get</p><disp-formula id="scirp.51462-formula700"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six510.png"  xlink:type="simple"/></disp-formula><p>provided that we choose <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six511.png" xlink:type="simple"/></inline-formula> as the solution to the equation</p><disp-formula id="scirp.51462-formula701"><label>(4.24)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six512.png"  xlink:type="simple"/></disp-formula><p>Taken together we thus have</p><disp-formula id="scirp.51462-formula702"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six513.png"  xlink:type="simple"/></disp-formula><p>Since <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six514.png" xlink:type="simple"/></inline-formula> we may pick a small enough <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six514.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six515.png" xlink:type="simple"/></inline-formula> such that the bracketed expression remains negative. By Gr&#246;nwall’s inequality this then proves the result with<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six514.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six515.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six516.png" xlink:type="simple"/></inline-formula>. To prove the case <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six514.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six515.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six516.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six517.png" xlink:type="simple"/></inline-formula> the same idea of proof applies and results in</p><disp-formula id="scirp.51462-formula703"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six518.png"  xlink:type="simple"/></disp-formula><p>for a certain new constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six519.png" xlink:type="simple"/></inline-formula> satisfying an equation similar to (4.24). <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six519.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six520.png" xlink:type="simple"/></inline-formula></p><p>We next aim at deriving some stability estimates with respect to perturbations in the reaction coefficients. An early account of this was given by Kurtz in [<xref ref-type="bibr" rid="scirp.51462-ref31">31</xref>] , see also [<xref ref-type="bibr" rid="scirp.51462-ref18">18</xref>] for a recent discussion in a bounded setting. Given the linear dependence on the coefficients<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six521.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six521.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six522.png" xlink:type="simple"/></inline-formula>in the elementary reactions (2.3) a suitable model seems to be that a perturbation <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six521.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six522.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six523.png" xlink:type="simple"/></inline-formula> in a propensity <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six521.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six522.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six523.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six524.png" xlink:type="simple"/></inline-formula> spreads linearly in a relative sense,</p><disp-formula id="scirp.51462-formula704"><label>(4.25)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six525.png"  xlink:type="simple"/></disp-formula><p>We make this formal by requiring that</p><disp-formula id="scirp.51462-formula705"><label>(4.26)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six526.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six527.png" xlink:type="simple"/></inline-formula> is a suitable measure of the total perturbation vector and where the perturbed propensity vector function is given by</p><disp-formula id="scirp.51462-formula706"><label>(4.27)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six528.png"  xlink:type="simple"/></disp-formula><p>The existence of an absolute constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six529.png" xlink:type="simple"/></inline-formula> in (4.26) follows from Assumption 4.1 (3). We further conveniently assume that the entire statement of Assumption 4.1 carries over to the perturbed system, and for convenience we shall also assume that all constants are the same. By the triangle inequality and Assumption 4.1 (3) we obtain from (4.26) the bound</p><disp-formula id="scirp.51462-formula707"><label>(4.28)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six530.png"  xlink:type="simple"/></disp-formula><p>with <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six531.png" xlink:type="simple"/></inline-formula> some constant and where the simplification in (4.28) assumes an a priori bound (e.g. stopping time) <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six531.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six532.png" xlink:type="simple"/></inline-formula>and additionally requires the integer inequality.</p><p>The starting point for the analysis will be It&#244;’s formula under the coupling described in Section 2.2.2. The techniques used below generalize well to pth order moment estimates, but for ease of exposition we let<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six533.png" xlink:type="simple"/></inline-formula>.</p><p>Hence under the model for coefficient perturbations (4.26)-(4.27) we have that</p><disp-formula id="scirp.51462-formula708"><label>(4.29)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six534.png"  xlink:type="simple"/></disp-formula><p>Theorem 4.10 (Continuity). Let two trajectories <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six535.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six535.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six536.png" xlink:type="simple"/></inline-formula> be given, with the same initial data and coupled according to the discussion in Section 2.2.2. Let the propensities for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six535.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six536.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six537.png" xlink:type="simple"/></inline-formula> be perturbed by <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six535.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six536.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six537.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six538.png" xlink:type="simple"/></inline-formula> as indi- cated in (4.26), (4.27). Then</p><disp-formula id="scirp.51462-formula709"><label>(4.30)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six539.png"  xlink:type="simple"/></disp-formula><p>Proof. We use the stopping time <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six540.png" xlink:type="simple"/></inline-formula> and put<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six540.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six541.png" xlink:type="simple"/></inline-formula>. From (4.29) we get</p><disp-formula id="scirp.51462-formula710"><label>(4.31)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six542.png"  xlink:type="simple"/></disp-formula><p>where (4.28) was used. Simplifying further for a bounded <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six543.png" xlink:type="simple"/></inline-formula> we get</p><disp-formula id="scirp.51462-formula711"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six544.png"  xlink:type="simple"/></disp-formula><p>Using that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six545.png" xlink:type="simple"/></inline-formula> and Gr&#246;nwall’s inequality we conclude that</p><disp-formula id="scirp.51462-formula712"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six546.png"  xlink:type="simple"/></disp-formula><p>To get rid of the stopping time we write in terms of indicator functions,</p><disp-formula id="scirp.51462-formula713"><label>(4.32)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six547.png"  xlink:type="simple"/></disp-formula><p>Using <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six548.png" xlink:type="simple"/></inline-formula> we get from Markov’s inequality and the previous estimate</p><disp-formula id="scirp.51462-formula714"><label>(4.33)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six549.png"  xlink:type="simple"/></disp-formula><p>Relying on the existence result in Theorem 4.7 we find that for any given <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula> we can select <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula> (and hence also<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six552.png" xlink:type="simple"/></inline-formula>) such that the right term is<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six552.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six553.png" xlink:type="simple"/></inline-formula>. We can next find <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six552.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six553.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six554.png" xlink:type="simple"/></inline-formula> such that for all<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six552.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six553.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six554.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six555.png" xlink:type="simple"/></inline-formula>, also the left term is<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six552.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six553.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six554.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six555.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six556.png" xlink:type="simple"/></inline-formula>. Hence for all<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six552.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six553.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six554.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six555.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six556.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six557.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six552.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six553.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six554.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six555.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six556.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six557.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six558.png" xlink:type="simple"/></inline-formula>as claimed. <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six550.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six551.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six552.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six553.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six554.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six555.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six556.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six557.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six558.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six559.png" xlink:type="simple"/></inline-formula></p><p>As a by-product of the proof we see that if the process is bounded, then for <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six560.png" xlink:type="simple"/></inline-formula> large enough the probability in (4.32) is zero.</p><p>Corollary 4.11 (Perturbation estimate, bounded version) If in Theorem 4.10, the processes <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six561.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six561.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six562.png" xlink:type="simple"/></inline-formula> are bounded, then for a constant<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six561.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six562.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six563.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.51462-formula715"><label>(4.34)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six564.png"  xlink:type="simple"/></disp-formula><p>The constant <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six565.png" xlink:type="simple"/></inline-formula> in (4.34) can be bounded explicitly by inspection of (4.28) and (4.31).</p><p>For an unbounded system it is apparently much more difficult to obtain explicit estimates. However, by controlling also the martingale part we can strengthen Theorem 4.10 in another direction.</p><p>Theorem 4.12 (Continuity/sup) Under the same assumptions as Theorem 4.10 we have that</p><disp-formula id="scirp.51462-formula716"><label>(4.35)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/24-7402502-six566.png"  xlink:type="simple"/></disp-formula><p>Proof. The quadratic variation of the martingale part in (4.29) can be bounded as</p><disp-formula id="scirp.51462-formula717"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six567.png"  xlink:type="simple"/></disp-formula><p>after using (4.28) and the integer inequality anew. For the drift part we may use the corresponding bound developed in the proof of Theorem 4.10. After taking supremum and expectation values of (4.29) and using Burkholder's inequality we therefore arrive at</p><disp-formula id="scirp.51462-formula718"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six568.png"  xlink:type="simple"/></disp-formula><p>by Gr&#246;nwall’s inequality and using the notation<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six569.png" xlink:type="simple"/></inline-formula>. We now rely on the same strategy as in the proof of Theorem 4.10 to similarly arrive at</p><disp-formula id="scirp.51462-formula719"><graphic  xlink:href="http://html.scirp.org/file/24-7402502-six570.png"  xlink:type="simple"/></disp-formula><p>and the conclusion follows as before.</p></sec></sec><sec id="s5"><title>5. Conclusions</title><p>We have proposed a theoretical framework consisting of a priori assumptions and estimates for problems in stochastic chemical kinetics. The assumptions are strong enough to guarantee well-posedness for a large and physically relevant class of problems. Long time estimates and limit results for perturbations in rate constants have been studied to exemplify the theory. The assumptions are constructive in the sense that explicit techniques for obtaining all postulated constants have either been worked out in detail or at least indicated. We have seen that the case <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/24-7402502-six571.png" xlink:type="simple"/></inline-formula> in Assumption 4.1 (2) is particularly promising from the analysis point of view in that the conditions for existence in Theorem 4.7 and the ergodicity in Theorem 4.9 both can be formulated naturally.</p><p>In the course of motivating our setup we have seen that most problems do not admit global Lipschitz constants and that one-sided versions do not provide a better alternative. Another conclusion worth highlighting is that it pays off to consider jump SDEs in a fully discrete setting in that there are potential complications in proving uniqueness in continuous state space. A practical implication is that care should be exercised when forming continuous approximations to these types of jump SDEs.</p><p>For future work we intend to re-visit certain classical results from the perspective of the framework developed herein; for example, thermodynamic limit results, time discretization strategies, and quasi-steady state approximations―all of which have a practical impact in a range of applications.</p></sec><sec id="s6"><title>Acknowledgements</title><p>The author likes to express his sincere gratitude to Takis Konstantopoulos for several fruitful and clarifying discussions. Early inputs on this work were also gratefully obtained from Henrik Hult, Ingemar Kaj, and Per L&#246;tstedt.</p><p>This work was supported by the Swedish Research Council within the UPMARC Linnaeus center of Excellence.</p></sec></body><back><ref-list><title>References</title><ref id="scirp.51462-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Lestas, I., Vinnicombe, G. and Paulsson, J. (2010) Fundamental Limits on the Suppression of Molecular Fluctuations. Nature, 467, 174-178. http://dx.doi.org/10.1038/nature09333</mixed-citation></ref><ref id="scirp.51462-ref2"><label>2</label><mixed-citation publication-type="other" xlink:type="simple">Raj, A. and van Oudenaarden, A. (2008) Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences. 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