<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">JBiSE</journal-id><journal-title-group><journal-title>Journal of Biomedical Science and Engineering</journal-title></journal-title-group><issn pub-type="epub">1937-6871</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/jbise.2019.1212044</article-id><article-id pub-id-type="publisher-id">JBiSE-97259</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject></subj-group></article-categories><title-group><article-title>
 
 
  False Color Method for Retinal Oximetry
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Erwin</surname><given-names>Michel Davila-Iniesta</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Santiago</surname><given-names>Guerrero-Gonzalez</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Jorge</surname><given-names>Santiago-Amaya</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Paola</surname><given-names>Castillo-Juarez</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Luis</surname><given-names>Niño-de-Rivera-Oyarzabal</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>SEPI ESIME Culhuacan, Instituto Politecnico Nacional, Mexico City, Mexico</addr-line></aff><aff id="aff2"><addr-line>ENCB Santo Tomas, Instituto Politecnico Nacional, Mexico City, Mexico</addr-line></aff><pub-date pub-type="epub"><day>10</day><month>12</month><year>2019</year></pub-date><volume>12</volume><issue>12</issue><fpage>533</fpage><lpage>544</lpage><history><date date-type="received"><day>15,</day>	<month>October</month>	<year>2019</year></date><date date-type="rev-recd"><day>17,</day>	<month>December</month>	<year>2019</year>	</date><date date-type="accepted"><day>20,</day>	<month>December</month>	<year>2019</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Oximetry is a method for measuring the oxygen saturation of haemoglobin in blood. Particularly, retinal oximetry based in the measurement of oxygen saturation in retinal vessels has acquired great interest to gather information on blood oxygenation from said vessels within inner and outer retina. Non-invasive spectrophotometric retinal oximetry has been studied for over five decades based on imaging spectroscopy. However, Optical Coherence Tomography (OCT) is an alternative to analyze the absorption difference between oxyhaemoglobin (HbO
  <sub>2</sub>) and deoxyhaemoglobin (Hb) in the retinal vessels and the choroidal structure. We propose in this paper an alternative process to manipulate conventional OCT images to evaluate changes in the relative haemoglobin oxygen saturation. Conventional OCT images from 570 nm and 600 nm in gray scale are converted to a corresponding color scale to be compared to the oxygenation information involved in the original gray scale OCT images.
 
</p></abstract><kwd-group><kwd>Choroidal Structure</kwd><kwd> False Color Method</kwd><kwd> Filters</kwd><kwd> Fundus</kwd><kwd> OCT Image</kwd><kwd> Oxygen Saturation</kwd><kwd> Oximetry</kwd><kwd> Retinal Vessels</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Fundus images are obtained by an internal view of the eye through the pupil and the transparent means lodged in the eyeball and the retina (namely cornea, crystalline, aqueous humor and vitreous humor) [<xref ref-type="bibr" rid="scirp.97259-ref1">1</xref>]. The study is performed by projecting a beam of light into the pupil to facilitate the visualization of the fundus. Fundus images can determine if a person has an eye condition, which could be retinal detachment, retinal thrombosis, macular degeneration, diabetic retinopathy, glaucoma, as well as being able to locate said condition [<xref ref-type="bibr" rid="scirp.97259-ref2">2</xref>]. In order to obtain a fundus image indirect observation is used, done by means of a slit lamp, in which the patient must remain motionless, sitting in a straight position and with their chin resting on a base approximately 15 cm away from the lamp. Their eye must remain open while light reflects inside the walls of the eye so a three-dimensional reconstruction of the interior can be performed. The clarity of the image depends directly on the frequency that the image is obtained, which comprises a range between 570 and 600 nm [<xref ref-type="bibr" rid="scirp.97259-ref3">3</xref>].</p><p>On the other hand, oxymetry is the study of oxygen saturation measurement within the ocular vasculature. In our case study, oxymetry is based on oxyhaemoglobin (HbO<sub>2</sub>) and deoxyhaemoglobin (Hb). Concerning the obtaining of the amount of oxygen within the blood vessels it is necessary to take advantage of the properties within HbO<sub>2</sub> and Hb when absorbing light. Additionally, it is imperative to determine the percentage of HbO<sub>2</sub>, which is known as oxygen saturation. Measuring oxygen saturation helps to know the state of the retina. At the time of this study, a beam of light with wavelengths ranging from 500 to 700 nm is applied, depending on the study performed [<xref ref-type="bibr" rid="scirp.97259-ref4">4</xref>]. These studies have aroused interest in finding the vasculature and detecting oxygen saturation inward the fundus, especially in the retina, since these are non-invasive techniques, therefore not representing any threat for human health [<xref ref-type="bibr" rid="scirp.97259-ref5">5</xref>].</p></sec><sec id="s2"><title>2. Methodology</title><p>The fundus image shown in <xref ref-type="fig" rid="fig1">Figure 1</xref> [<xref ref-type="bibr" rid="scirp.97259-ref6">6</xref>] displays an internal visualization of the eyeball structure through an image taken from the transparent media contained within the retina mentioned in the Introduction. Retinal vessels are the only blood vessels in the human body that can be observed directly through the pupil of the eye.</p><p><xref ref-type="fig" rid="fig2">Figure 2</xref> presents the light absorption capacity between Hb and HbO<sub>2</sub> varies with the wavelenght of the beam of light, giving out ranges between 500 and 640 nm for both Hb and HbO<sub>2</sub>. Please note that 570 and 600 nm are two key wavelengths in the frequency response of Hb and HbO<sub>2</sub>. This property allows us to find any differences between the Hb and HbO<sub>2</sub>. J&#243;na Valger&#240;ur Kristj&#225;nsd&#243;ttir described the results of</p><p>light absorption capacity in her study [<xref ref-type="bibr" rid="scirp.97259-ref3">3</xref>]. HbO<sub>2</sub> oxygen saturation is usually measured using non-invasive spectrophotometric oximetry based on HbO<sub>2</sub> and Hb having different light absorption properties, i.e. a different color. Therefore, deoxygenated blood (less HbO<sub>2</sub>) has a dark red color and fully oxygenated blood (more HbO<sub>2</sub>) has a brighter red color [<xref ref-type="bibr" rid="scirp.97259-ref7">7</xref>].</p><p>Fundus images in which some filters are applied may contain details and damaged areas that are unnoticeable to the naked eye [<xref ref-type="bibr" rid="scirp.97259-ref8">8</xref>]. Comparison in digital images can be used as a filter, visualizing its displacement and the deformations inside it along a determined period of time. With this method we can find how similar one image is to another, depending on the intensity in the shades of gray allocated in the image.</p><p>As a first approach, in order to detect the minimal number of variations in the vessels and the tissues of the retina, we proposed to compare a fundus image obtained by means of an OCT with itself but changing it in one pixel [<xref ref-type="bibr" rid="scirp.97259-ref9">9</xref>]. This allows us to show that such differences of a pixel are detected, as shown in <xref ref-type="fig" rid="fig6">Figure 6</xref> and <xref ref-type="fig" rid="fig7">Figure 7</xref>. In this method, the original fundus image is taken and converted to a grayscale image, consisting of 256 shades of gray. Therefore, we obtained an image that contains a minimal amount of noise, thus avoiding any alteration through any study. A low-pass filter was designed, which takes the form of the Pascal Triangle, avoiding Gaussian noise, as shown in <xref ref-type="fig" rid="fig3">Figure 3</xref>.</p><p>In <xref ref-type="fig" rid="fig4">Figure 4</xref> we used the same low-pass filter as a contrast enhancement to increase the amount of white in the image to highly detail some features that are unnoticeable when the image is displayed in grayscale. Therefore, we obtained a negative image to simulate the disc angiography images [<xref ref-type="bibr" rid="scirp.97259-ref10">10</xref>], displayed in <xref ref-type="fig" rid="fig5">Figure 5</xref>.</p><p>The results shown in Figures 3-5 were compared with the original OCT image that was digitally modified to make the relevant comparison. This process consisted of applying the same treatment that received the original OCT image and then being able to compare the image with respect to it. This was achieved by comparing a pixel at a certain position with its similar artificial modification image. If the pixels between them have the same shade of gray, the same pixel will be displayed. On the other hand, if the pixel in the original image is different from that of the modified image, the proposed method automatically subtracts it between the values that the pixels have, showing the hue obtained between the subtractions</p><p>of these values.</p><p>We randomly selected one of the two images that were initially compared in order to apply the False Color Method. We apply the Top-Hat and Bottom-Hat filters between the histogram equalization with the intention of highlighting the details that are not visible in the original OCT image to enhance the selected image [<xref ref-type="bibr" rid="scirp.97259-ref11">11</xref>]. Therefore, the image resulting from the contrast improvement was equalized to observe 16 gray intensities within the image, thus the False Color Method can be applied to visualize the oxygenation of the structure on a new color scale. This new color scale clearly displays the differences between Hb and HbO<sub>2</sub>, as seen in <xref ref-type="fig" rid="fig2">Figure 2</xref> (570 and 600 nm).</p></sec><sec id="s3"><title>3. Results</title><p>The results in <xref ref-type="fig" rid="fig6">Figure 6</xref> show the differences between the original OCT image and its modified counterpart, as previously stated in the Methodology section. These differences consist of small black dots due to subtraction between the values of the shades of gray found inside the images. It is important to mention that the black dots in the final image represent a minimal amount of noise that still remains in the image after applying the low-pass filter to eliminate said noise.</p><p>In order to obtain the Region of Interest (ROI), we need to apply a cut, called trimming, to the image resulting from comparing both images, shown in <xref ref-type="fig" rid="fig7">Figure 7</xref>. This allows us to determine which area presents differences when being analyzed throughout the study.</p><p>When the compared fundus image is trimmed, the developed algorithm applied to the fundus images and the False Color Method for retinaoxymetry makes the distinction of the tone of the grays in the image. Consequently, the False Color Method is applied to one of the two images that were selected earlier. In this case, <xref ref-type="fig" rid="fig3">Figure 3</xref> was taken into account, now called <xref ref-type="fig" rid="fig8">Figure 8</xref>(A), which was divided into three parts: Red, Green and Blue (Figures 8(B)-(D), respectively). Once all the three images were obtained, we were given the option to select any of these images. In our case study, we selected the green image, as it is the image that gives out more information.</p><p>In <xref ref-type="fig" rid="fig8">Figure 8</xref>(E), the Bottom-Hat filter was applied, obtaining a new image highlighting some regions of the image displayed in <xref ref-type="fig" rid="fig8">Figure 8</xref>(C). After applying the Top-Hat filter, a contrast enhancement was applied to further lighten the image obtained with said filter. Subsequently, the histogram was equalized to take into account only 16 shades of gray, with the intention of minimizing the amount of intensities to be processed in the False Color Method algorithm.</p><p>We show in <xref ref-type="fig" rid="fig9">Figure 9</xref>(D) the corresponding fundus image once the False Color Method was applied.</p><p>Oxygen saturation in blood vessels is represented by internal colors, where red represents maximum oxygen saturation, green is intermediate saturation, and blue null saturation. The proposed software automatically identifies the blood vessels and selects points without illumination from the images, which correspond to the maximum absorptivity at 600 nm; case contrary at 570 nm, according to <xref ref-type="fig" rid="fig2">Figure 2</xref>. After identifying these places, oxygen saturation is calculated and represented by colors, so that the red color represents the maximum oxygen saturation, the green color intermediate oxygen saturation and the blue color null oxygen saturation. Color adjustment must be done according to 570 nm. As can be seen in <xref ref-type="fig" rid="fig9">Figure 9</xref>(C), a dark grayscale will result in a brighter False Color Method image. However, the color allocation conditions are not well established, since this is a novel study.</p><p>Please note that <xref ref-type="fig" rid="fig8">Figure 8</xref>(A) corresponds to an image of a healthy eye, obtained from [<xref ref-type="bibr" rid="scirp.97259-ref12">12</xref>]. From here, <xref ref-type="fig" rid="fig8">Figure 8</xref>(B) to <xref ref-type="fig" rid="fig1">Figure 1</xref>0 correspond to the application of the proposed method to the same image, as explained previously.</p><p><xref ref-type="fig" rid="fig1">Figure 1</xref>3 shows the detailed image from <xref ref-type="fig" rid="fig1">Figure 1</xref>2(D). As explained before, <xref ref-type="fig" rid="fig1">Figure 1</xref>1(C) gives out the most amount of information to get the grayscale image shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>1(E). Once this step is done, the filters in <xref ref-type="fig" rid="fig9">Figure 9</xref> are applied. The results are displayed in <xref ref-type="fig" rid="fig1">Figure 1</xref>2 showing an important enhancement to the original OCT image from <xref ref-type="fig" rid="fig1">Figure 1</xref>2(A).</p><p>It is worth mentioning that <xref ref-type="fig" rid="fig1">Figure 1</xref>1(A) was obtained from [<xref ref-type="bibr" rid="scirp.97259-ref6">6</xref>]. Subsequently, <xref ref-type="fig" rid="fig1">Figure 1</xref>1(B) to <xref ref-type="fig" rid="fig1">Figure 1</xref>3 shows the aforementioned method applied.</p></sec><sec id="s4"><title>4. Discussion</title><p>The use of different methods and filters to obtain the differences between two images allows observing whether the patient is developing a degenerative condition that can lead to vision loss. This study using the False Color Method let observe the choroidal vasculature from a fundus image in order to find details unnoticeable for the naked eye, thus approaching to oxygen saturation levels as reported by J&#243;na Valger&#240;ur Kristj&#225;nsd&#243;ttir [<xref ref-type="bibr" rid="scirp.97259-ref3">3</xref>]. Now then, <xref ref-type="fig" rid="fig1">Figure 1</xref>4 displays the oxygen saturation, where the red color represents the highest saturation, the green color average saturation, and the purple color null saturation.</p><p>The False Color Method was applied in the same image reported in [<xref ref-type="bibr" rid="scirp.97259-ref3">3</xref>] in order to make the relevant comparisons, shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>5. Reader can see that the red color is the maximum saturation of oxygen, the green color is the mean saturation and the blue/purple color is a null saturation, analogous like in the aforementioned study.</p><p>The False Color Method in <xref ref-type="fig" rid="fig1">Figure 1</xref>5 displays more clearly the choroidal vasculature and the retinal vessels in <xref ref-type="fig" rid="fig1">Figure 1</xref>4, where said complex vasculature is not easily noticeable. However, in <xref ref-type="fig" rid="fig1">Figure 1</xref>5 there is more noise, thus considerably affecting the resulting image.</p><p><xref ref-type="fig" rid="fig1">Figure 1</xref>6 presents an angiography fundus image with injected fluoresce in from [<xref ref-type="bibr" rid="scirp.97259-ref4">4</xref>]. The image in <xref ref-type="fig" rid="fig1">Figure 1</xref>6(A) comes from a patient with eye ischemia, in other hand <xref ref-type="fig" rid="fig1">Figure 1</xref>6(B) shows the same case enhanced with the proposed method. We find in <xref ref-type="fig" rid="fig1">Figure 1</xref>6(B) color differences within vasculature structure, not clearly visible in <xref ref-type="fig" rid="fig1">Figure 1</xref>6(A). However, a future research could measure possible oxygenation difference levels.</p><p><xref ref-type="fig" rid="fig1">Figure 1</xref>7(A) shows the choroidal structure of a healthy eye. Now then, <xref ref-type="fig" rid="fig1">Figure 1</xref>7(B) displays the angiography of the choroidal structure by applying the proposed method.</p><p><xref ref-type="fig" rid="fig1">Figure 1</xref>8(A) shows the fundus image of an eye with Retinitis Pigmentosa. After applying the False Color Method, we obtained the resulting image displayed in <xref ref-type="fig" rid="fig1">Figure 1</xref>8(B).</p><p>Please note that <xref ref-type="fig" rid="fig1">Figure 1</xref>6(A), <xref ref-type="fig" rid="fig1">Figure 1</xref>7(A), and <xref ref-type="fig" rid="fig1">Figure 1</xref>8(A) correspond to fundus images obtained with OPTOS’ Ultra-widefield Technology (UWF) from an OPTOS California icg OCT [<xref ref-type="bibr" rid="scirp.97259-ref4">4</xref>].</p><p>Finally, due to the absorptivityis inverse at 600 nm with respect to 570 nm, the algorithm presented was modified to obtain images with inversed colors (as can be seen in from Figures 15-18). These modifications changed the hues that will be assigned to the shades of grey: the values that are closest to black will be assigned a green color and, if the intensity closely resembles white it will be assigned a black color. These images, reported by OPTOS [<xref ref-type="bibr" rid="scirp.97259-ref4">4</xref>] from patients injected with fluorescein solution to pigment the blood and to obtain the fundus laser images with different wavelengths (532 nm for green laser, 635 nm for red laser, and 488 nm for blue laser).</p></sec><sec id="s5"><title>5. Concluding Remarks</title><p>The proposed method allows enhancing OCT images from either conventional, angiography OCT or laser OCT in order to compare any changes in sequential OCT images. The algorithm detects minimal changes within the structure (i.e. one pixel change, as shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>). <xref ref-type="fig" rid="fig8">Figure 8</xref>(E) displays the enhancement of the original OCT image. Additionally, in <xref ref-type="fig" rid="fig1">Figure 1</xref>0 and <xref ref-type="fig" rid="fig1">Figure 1</xref>3 we show evident differences obtained using the proposed method. As a first approach, the vasculature of the healthy eye is red. However, <xref ref-type="fig" rid="fig1">Figure 1</xref>3 exposes an eye with Retinitis Pigmentosa showing a high vasculature detail, suppose, with different oxygenation levels that must be measured in a future research as well as a more detailed study of Retinitis Pigmentosa physiopathology.</p><p>On the other hand, the method proposed in this work can perform an image study with a single image obtained from any OCT. We concluded that using the False Color Method and the Bottom-Hat filter gives out results similar to those reported by J&#243;na Valger&#240;ur Kristj&#225;nsd&#243;ttir [<xref ref-type="bibr" rid="scirp.97259-ref3">3</xref>]. Our initial results require a more accurate approach on the color scale.</p></sec><sec id="s6"><title>Acknowledgements</title><p>Davila-Iniesta et al. thank CONACyT and Instituto Politecnico Nacional for financial support throughout the making of this work.</p></sec><sec id="s7"><title>CONFLICTS OF INTEREST</title><p>The authors declare that they have no conflicts of interest.</p></sec></body><back><ref-list><title>References</title><ref id="scirp.97259-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Graue-Wiechers E. and Graue-Hernandez E. (2009) Ophthalmology in the Practice of General Medicine. 3rd Edition, McGraw Hill, Mexico.</mixed-citation></ref><ref id="scirp.97259-ref2"><label>2</label><mixed-citation publication-type="other" xlink:type="simple">Not Without My Glasses (2018) Visual Health in Mexico: Half Population Needs Glasses.  
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