<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">Health</journal-id><journal-title-group><journal-title>Health</journal-title></journal-title-group><issn pub-type="epub">1949-4998</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/health.2017.94050</article-id><article-id pub-id-type="publisher-id">Health-75802</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject><subject> Medicine&amp;Healthcare</subject></subj-group></article-categories><title-group><article-title>
 
 
  Screening of Bacterial and Fungal Biota Associated with Oreochromis niloticus in Lake Manzala and Its Impact on Human Health
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mahmoud</surname><given-names>M. M. Zaky</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mohsen</surname><given-names>E. Ibrahim</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>Department of Botany, Faculty of Science, University of Port Said, Port Said, Egypt</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>zakymahmoud67@gmail.com(MMMZ)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>07</day><month>04</month><year>2017</year></pub-date><volume>09</volume><issue>04</issue><fpage>697</fpage><lpage>714</lpage><history><date date-type="received"><day>January</day>	<month>4,</month>	<year>2017</year></date><date date-type="rev-recd"><day>Accepted:</day>	<month>April</month>	<year>27,</year>	</date><date date-type="accepted"><day>April</day>	<month>30,</month>	<year>2017</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  
    In this study fish samples were investigated for Bacteria and Fungi, in fish parts, such as intestine, gills and skin. Bacterial counts of Total viable bacteria (T.V.B) reached more than 9.5 &#215; 10
   <sup>5</sup> cfu and faecal coliforms (F.C) reached 1.2 &#215; 10
   <sup>5</sup> cfu. Different species were identified, Using API technology. 
   <em>Escherichia coli</em> comes first by being recording thirty number case of isolation constituting 36%, it followed by 
   <em>Proteus mirabilis</em> which is represented by twenty four number case of isolation accounting for 30%. Other taxa viz: 
   <em>Klebsiella pneumonia</em>, 
   <em>Citrobacter freundii</em>, 
   <em>Providencia stuartii</em> and 
   <em>Erwinia sp.</em> came next according to their case number of isolation, they represented only by 7%. They showed different antibiotics with different inhibitory concentrations, resistance pattern to gentamycin 10 μg, Penicillin G, tetracycline 30 μg, Ampicillin 10 μg, Ampicillin 30 μg, chloramphenicol (C) 30 μg, Rifampicin 25 μg, Streptomycin 5 μg, cefotaxime 15 μg. Mycological investigation revealed the presence of variety of fungal species, particularly, toxigenic species, such as, 
   <em>Aspergillus</em> spp, 
   <em>Penicillium</em> spp and 
   <em>Fusarium</em> spp. These results are indication of the spoilage of fishes which caught from Lake Manzala and are risky for human consumption and hazardous to human health in this important area of Egypt, due to the high pollution condition of Lake Manzala. 
  
 
</p></abstract><kwd-group><kwd>Indicator Bacteria</kwd><kwd> Pathogens</kwd><kwd> Tilapia spp</kwd><kwd> Mycotoxins</kwd><kwd> Fungi</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Fish and fish product are considered as preferable source of high nutritional values and highly desirable food due to its high quality animal protein content as its exceptional richness in calcium and phosphorus and its generous supply of &#223;- complex vitamins. Fish provide a large percent of animal protein consumed by the world population. In tropical and subtropical countries, 60 percent of the people depend on fish for 40 percent or more of their protein [<xref ref-type="bibr" rid="scirp.75802-ref1">1</xref>] . Bacterial and fungal contamination of fish is considered the main cause of signs of spoilage as off flavor and unpalatable taste and it may constitute a public health hazard as well as many of economic losses [<xref ref-type="bibr" rid="scirp.75802-ref2">2</xref>] [<xref ref-type="bibr" rid="scirp.75802-ref3">3</xref>] [<xref ref-type="bibr" rid="scirp.75802-ref4">4</xref>] . At the time of harvest, fish carries a high microbial load on the surface of their skins, in their intestinal tracts and in their gills. The type and number of microorganisms that live in fish vary according to the season, the species and the natural habitat. Additional contamination may occur during the harvesting, handling or processing of the fish, also during the storage and transportation “Fish and Fishery Products Hazards and Controls Guidance, Fourth Edition―April 2011”.</p><p>Nile tilapia (Oreochromis niloticus) is one of the most widely cultured fish in the world [<xref ref-type="bibr" rid="scirp.75802-ref5">5</xref>] . In Egypt, it ranks first as the most important wild and cultured fish [<xref ref-type="bibr" rid="scirp.75802-ref6">6</xref>] . It is considered the best growing species with desirable characteristics. It can be cultured successfully in Lake, ponds, cages, rice fields, impounding waters and integrated farming systems.</p><p>Manzala’s lagoon is the largest brackish water body of the Nile Delta coastal lakes lies between 31˚00&quot; and 31˚30&quot; latitude and 31˚45&quot; and 32˚20&quot; longitude and is shallow with depth rarely exceeding one meter with a total area ~700 km<sup>2</sup> [<xref ref-type="bibr" rid="scirp.75802-ref7">7</xref>] . It occupies the north eastern corner of the Nile Delta between the Mediterranean Sea (North) and Suez Canal (East), while 5 Governorates share the western and southern Lake borders. The lake is supposed to have resulted from the accumulation of the Nile flood water, before the construction of the High Dam, in the low lying land which it occupies. It is the largest and most economically important of Egypt’s coastal lakes where it provides an abundance of fish and an internationally important wintering area for water birds and staging area for migratory birds. It has been gradually transformed from a largely marine or estuarine environment to eutrophic brackish water system. The overall area of the lake was decline from more than 1400 km<sup>2</sup> in the early 1970s to less than 700 km<sup>2</sup> in 2003 [<xref ref-type="bibr" rid="scirp.75802-ref8">8</xref>] . The Lake is considered an important and valuable natural resource ecosystem for fish catch, wildlife, hydrological and biological regime in Egypt. In the year 1979, the fish production was about 75,000 tons and the lake area was about 29,100 feddan (feddan = 0.42 hectare). Many factors, such as pollution, and drying of the many parts of the lake, have reduced the fish production significantly, to about 47,500 tons in 1990, when the lake area is19,000 feddan [<xref ref-type="bibr" rid="scirp.75802-ref9">9</xref>] . There are about 12,000 fisherman-representing families with a population about 50,000 people living on the islands of the lake [<xref ref-type="bibr" rid="scirp.75802-ref10">10</xref>] .</p><p>The microbial biota of freshly fish is usually a reflection of the environment in which it was harvested. Generally, ponds and rivers that harbor fish may be the source of the microorganisms due to indiscriminate dumping of human and animal excreta as well as other environmental wastes into natural water bodies or washing of excreta from land into water during the rainy season [<xref ref-type="bibr" rid="scirp.75802-ref11">11</xref>] . Fish and other marine organisms that live in contaminated coastal water, poses a microbial microbiota dependent on the existing in the waters where they live. In the mucus that covers the external surface of the fish, it has been identified bacteria of the genus: Pseudomonas, Salmonella, Micrococcus, Sarcina, Serratia and Vibrio. Regardless of the type of nourishment of the fish, which ingest bacteria on their food, it is registered a large number of these microorganisms in their digestive tract and epidermis, where also it has been identified species of genus Pseudomonas, Escherichia, Salmonella, Streptococcus, Staphylococcus, Clostridium and Vibrio [<xref ref-type="bibr" rid="scirp.75802-ref12">12</xref>] .</p><p>Little attention has been given to the widespread occurrence of fungi, their presence and significance in aquatic environments [<xref ref-type="bibr" rid="scirp.75802-ref13">13</xref>] [<xref ref-type="bibr" rid="scirp.75802-ref14">14</xref>] . However [<xref ref-type="bibr" rid="scirp.75802-ref15">15</xref>] isolated 8 species of fungi from eggs and brood stock of rainbow trout O. mykiss. These isolates were Penicillium spp, Acreomonium spp, Alternaria spp, Fusarium solani, Aspergillus spp, Mucor spp, Saprolegnia spp. and Cladosporium spp.</p><p>Isolated microorganisms from feces or environmental waste contain antibiotic resistant gene that may disseminate and contaminate aquatic environment. Subsequently, fish contamination with antibiotic-resistant bacteria can be a major threat to public health, as it can be transferred to other bacteria of human clinical significance [<xref ref-type="bibr" rid="scirp.75802-ref16">16</xref>] . The choices of antibiotic for the treatment of common infectious diseases in humans are becoming increasingly limited, expensive and ineffective due to the emergence of antibiotic resistant bacteria [<xref ref-type="bibr" rid="scirp.75802-ref17">17</xref>] .</p><p>The presence of diverse enteric bacteria (Citrobacter brackii, Citrobacter freundii, Enterobacter sakazakii, Enterobacter cloacae, Vibrio cholorae, Proteus mirabilis, Proteus vulgaris, Klebsiella pneumoniae and Aeromonas hydrophila) and mycotoxins producing fungi (Aspergillus spp., Fusarium spp., and Penicillium spp.,) in aquatic capture fish indicated the degree of habitat and handlers contamination. Their presence represents a potential hazard to humans, especially the immunocompromised consumers such as cases of HIV/AIDS.</p><p>This study was aimed to investigate the bacterial and mycobiota associated with apparently healthy as well as diseased fishes (Oreochromis niloticus) from Lake Manzala in Port Said governorate and to evaluate the hygienic health hazard of fish contaminated with some food borne pathogens.</p></sec><sec id="s2"><title>2. Materials &amp; Methods</title><sec id="s2_1"><title>2.1. Location and Site Description</title><p>Lake Manzala is a brackish lake, sometimes called a lagoon, in north eastern Egypt on the Nile Delta near Port Said. It is the largest of the northern deltaic lakes of Egypt. As of 2008 it is 47 km long and 30 km wide (<xref ref-type="fig" rid="fig1">Figure 1</xref>).</p><p>Manzala Lagoon is a typical coastal lagoon ecosystem received two water types from two main sources [<xref ref-type="bibr" rid="scirp.75802-ref18">18</xref>] . Firstly, Mediterranean Seawater via three points, El-Gamil, El-Boughdady and New El-Gamil, which has been recently established [<xref ref-type="bibr" rid="scirp.75802-ref19">19</xref>] and secondly, fresh-highly enriched water from several drains and pumping stations. Simultaneously, saline-less productive seawater and fresh highly</p><fig id="fig1"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref></label><caption><title> Lake Manzala</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/10-8203939x2.png"/></fig><p>nutrient loaded drainage water conductivity.</p></sec><sec id="s2_2"><title>2.2. Sampling Methodology</title><p>20 Fresh fish samples were randomly selected and purchased from fishermen from Lake Manzala and immediately packed in sterile polyethylene bags and preserved on ice. All collected samples were transported and prepared for immediate bacteriological and fungal analysis. Fish tissues for microbiological analysis were the skin (outside fish surface), the gills (whole arches) and the entire gastrointestinal tract with spleen.</p></sec><sec id="s2_3"><title>2.3. Microbiological Analysis</title><p>Quantitative bacteriological and fungal analysis of the fish samples were carried out using total plate count on nutrient agar (NA) while fungi isolation was carried out using Czapek’s yeast extract agar (CYA) and potato dextrose agar (PDA). Total viable bacteria and faecal coli form were detected using MacConkey agar and Eosin Methylene Blue (EMB) agars respectively. Their counts were expressed in cfu/ml. The method of [<xref ref-type="bibr" rid="scirp.75802-ref20">20</xref>] was used.</p><p>Ten grams of flesh and gills of the fresh fish were collected using a dissecting set. These were separately added to 90 ml of 0.1% peptone water and homogenized in a blender. 1 ml of the homogenate was transferred to a test tube containing 9 ml peptone water to obtain a dilution of 10<sup>−1</sup>. In a similar manner, 1 ml was transferred from this dilution to a test tube containing 9 ml diluents and the process was repeated until a dilution of 10<sup>−9</sup> was obtained according to the method of [<xref ref-type="bibr" rid="scirp.75802-ref21">21</xref>] .</p></sec><sec id="s2_4"><title>2.4. Characterization of the Isolates</title><p>Bacterial isolates were characterized by standard microbiological methods including colonial (size, shape, colour, consistency, edges, elevation and opacity), morphological (Gram staining and arrangement/shape) and biochemical characterization (oxidase, indole, urease, citrate, catalase, sugar fermentation, methyl-red and Vorges-proskauer). Each isolate was subjected to a biochemical test using the Bergey’s manual of systematic bacteriology according to [<xref ref-type="bibr" rid="scirp.75802-ref22">22</xref>] and the fungal isolates were identified according to the methods of [<xref ref-type="bibr" rid="scirp.75802-ref23">23</xref>] . Identification was confirmed by the recommended API 20E system (BioMerieux).</p></sec><sec id="s2_5"><title>2.5. Counts of Bacterial Isolates</title><sec id="s2_5_1"><title>2.5.1. Total Viable Count</title><p>The plate count agar was inoculated with bacterial isolates and incubated at 37˚C for 48 h. After 48 h, the colour, size, shape, texture surface elevation and margin of the colonies were observed with a microscope and recorded. The numbers of the colonies were counted, and the colony forming units per gram (cfu/g) were calculated and recorded according to the methods of [<xref ref-type="bibr" rid="scirp.75802-ref24">24</xref>] .</p></sec><sec id="s2_5_2"><title>2.5.2. Fecal Coliform</title><p>The pour plate method was used to estimate the number of heterotrophic bacteria (plate count agar, 37˚C, 48 h), and the membrane filter technique was applied for Total coliforms (m-Endo medium, 37˚C, 24 h), Fecal coliforms (m-Fc agar, 44˚C, 24 h), and Enterococci (Slanetz and Bartley agar, 37˚C, 48 h) [<xref ref-type="bibr" rid="scirp.75802-ref25">25</xref>] .</p></sec></sec><sec id="s2_6"><title>2.6. Drug Resistant Bacteria</title><p>Multi-drug resistant bacteria were isolated from fresh fish and fish handlers using conventional methods of bacterial isolation such as colonial morphology, gram staining and biochemical tests. The bacteria isolated include Escherichia coli, Proteus mirabilis, Klebsiella pneumonia, Citrobacter freundii, Providencia stuartii, Erwinia sp. These bacterial isolates were subjected to antibiotic susceptibility testing using disc diffusion technique against ten antimicrobial agents.</p></sec><sec id="s2_7"><title>2.7. Fish Fungal Isolation</title><p>Dilution plate [<xref ref-type="bibr" rid="scirp.75802-ref26">26</xref>] technique was applied in order to get as good diversity as possible. Czapek’s yeast extract agar (CYA) and potato dextrose agar (PDA) as isolation media and supplemented with Rose Bengal (1/15,000) and chloramphenicol (50 ppm) for suppression of bacterial growth [<xref ref-type="bibr" rid="scirp.75802-ref27">27</xref>] . Ten grams of each fish part (skin &amp; muscle, gills, intestine) was homogenized in 100 ml sterile water then diluted to 1/1000. One milliliter of the diluted sample (10<sup>−3</sup>) was aseptically transferred into a sterile Petri dish then pour media. To obtain as much species as possible, six plates isolation medium were prepared from every fish part. After inoculating, plates were incubated at 27˚C for 5 to 7 days, thereafter; developing colonies were identified and counted.</p></sec><sec id="s2_8"><title>2.8. Identification of Fungal Isolates</title><p>Taxonomic identification of isolated fungi using phenotypic (macroscopic &amp; microscopic) approach down to the species level on standard morphology characteristics of fungal isolates down to the species level on standard media will mainly based on the following identification keys: [<xref ref-type="bibr" rid="scirp.75802-ref28">28</xref>] for Penicillium; [<xref ref-type="bibr" rid="scirp.75802-ref29">29</xref>] for Aspergillus; [<xref ref-type="bibr" rid="scirp.75802-ref30">30</xref>] [<xref ref-type="bibr" rid="scirp.75802-ref31">31</xref>] for dematiaceous hyphomycetes, and more dematiaceous hyphomycetes; [<xref ref-type="bibr" rid="scirp.75802-ref32">32</xref>] for Fusarium; [<xref ref-type="bibr" rid="scirp.75802-ref33">33</xref>] for miscellaneous fungi; and [<xref ref-type="bibr" rid="scirp.75802-ref34">34</xref>] for ascomycetes.</p></sec></sec><sec id="s3"><title>3. Results</title><p>Indeed fish and other free-swimming marine animals do not usually carry those organisms generally considered to be typical of the mammalian microflora, including Escherichia coli, the “faecal coliforms”, and enterococci. The presence of human enteric organisms on marine food products is clear evidence of contamination from a terrigenous source.</p><sec id="s3_1"><title>3.1. Bacterial Counts</title><sec id="s3_1_1"><title>3.1.1. Total Viable Count</title><p>As for the bacterial counts of Oreochromis niloticus, data of <xref ref-type="table" rid="table1">Table 1</xref> shows that counts varied from one fish part to another. While intestine showed a mean count of 3.1 &#180; 10<sup>5</sup>; gills revealed a mean count of 6.2 &#180; 10<sup>4</sup>. Still third fish part skin which obtains a mean count of 2.9 &#180; 10<sup>3</sup>.</p></sec><sec id="s3_1_2"><title>3.1.2. Fecal Coli Forms Count</title><p>Fish samples (skin, gill and intestine) of tilapia have been surveyed for their fecal coli form population densities (<xref ref-type="table" rid="table2">Table 2</xref>).</p><p>The data shows that count differ markedly in different fish parts. Intestine showed a mean count of 2.9 &#180; 10<sup>4</sup>; gill obtains a mean count of 5 &#180; 10<sup>3</sup>; where skin revealed a mean count of 0.5 &#180; 10<sup>3</sup>.</p><p>During the fish bacterial investigation, a total number of six species has been reported from the three fish parts (skin, gill, intestine). Recorded bacteria belong to six genera <xref ref-type="table" rid="table3">Table 3</xref>; of which Escherichia coli comes first by being recording thirty number case of isolation constituting 36%, it followed by Proteus mirabilis which is represented by twenty four number case of isolation accounting for</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Count and mean count of total viable bacteria of Tilapia fish</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="2"  >Parameter Organ</th><th align="center" valign="middle"  colspan="2"  ></th><th align="center" valign="middle"  colspan="2"  >Total viable bacteria</th><th align="center" valign="middle" ></th></tr></thead><tr><td align="center" valign="middle"  colspan="2"  >Minimum</td><td align="center" valign="middle"  colspan="2"  >Maximum</td><td align="center" valign="middle" >Mean</td></tr><tr><td align="center" valign="middle" >Intestine</td><td align="center" valign="middle" >1 &#180; 10<sup>5</sup></td><td align="center" valign="middle"  colspan="2"  >9.5 &#215;&#215; 10<sup>5</sup></td><td align="center" valign="middle"  colspan="2"  >3. 1 &#215; 10<sup>5</sup> &#177; 2.9 &#215; 10<sup>5</sup></td></tr><tr><td align="center" valign="middle" >Gills</td><td align="center" valign="middle" >1.8 &#180; 10<sup>4</sup></td><td align="center" valign="middle"  colspan="2"  >1.2 &#215; 10<sup>5</sup></td><td align="center" valign="middle"  colspan="2"  >6.2 &#215; 10<sup>4</sup> &#177; 3.8 &#215; 10<sup>4</sup></td></tr><tr><td align="center" valign="middle" >Fish skin</td><td align="center" valign="middle" >1.5 &#180; 10<sup>3</sup></td><td align="center" valign="middle"  colspan="2"  >1.4 &#215; 10<sup>5</sup></td><td align="center" valign="middle"  colspan="2"  >2.9 &#215; 10<sup>3</sup> &#177; 3.5 &#215; 10<sup>3</sup></td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr></tbody></table></table-wrap><table-wrap id="table2" ><label><xref ref-type="table" rid="table2">Table 2</xref></label><caption><title> Count and mean count of fecal coli form of Tilapia fish</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="2"  >Parameter Organ</th><th align="center" valign="middle" ></th><th align="center" valign="middle" >Fecal coli form</th><th align="center" valign="middle" ></th></tr></thead><tr><td align="center" valign="middle" >Minimum</td><td align="center" valign="middle" >Maximum</td><td align="center" valign="middle" >Mean</td></tr><tr><td align="center" valign="middle" >Intestine</td><td align="center" valign="middle" >5 &#215; 10<sup>2</sup></td><td align="center" valign="middle" >1.2 &#215; 10<sup>5</sup></td><td align="center" valign="middle" >2.9 &#215; 10<sup>4</sup> &#177; 3.1 &#215; 10<sup>4</sup></td></tr><tr><td align="center" valign="middle" >Gills</td><td align="center" valign="middle" >1 &#215; 10<sup>2</sup></td><td align="center" valign="middle" >2.5 &#215; 10<sup>4</sup></td><td align="center" valign="middle" >5 &#215; 10<sup>3</sup> &#177; 6 &#215; 10<sup>3</sup></td></tr><tr><td align="center" valign="middle" >Fish skin</td><td align="center" valign="middle" >50</td><td align="center" valign="middle" >3.3 &#215; 10<sup>3</sup></td><td align="center" valign="middle" >0.5 &#215; 10<sup>3</sup> &#177; 0.1 &#215; 10<sup>3</sup></td></tr></tbody></table></table-wrap><table-wrap id="table3" ><label><xref ref-type="table" rid="table3">Table 3</xref></label><caption><title> Number and percentage of bacterial species isolated from Oreochromis niloticus</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Species</th><th align="center" valign="middle" >Rate number of isolation</th><th align="center" valign="middle" >Percentage</th></tr></thead><tr><td align="center" valign="middle" >Escherichia coli</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >36%</td></tr><tr><td align="center" valign="middle" >Proteus mirabilis</td><td align="center" valign="middle" >24</td><td align="center" valign="middle" >30%</td></tr><tr><td align="center" valign="middle" >Klebsiella pneumonia</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >7%</td></tr><tr><td align="center" valign="middle" >Citrobacter freundii</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >7%</td></tr><tr><td align="center" valign="middle" >Providencia stuartii</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >7%</td></tr><tr><td align="center" valign="middle" >Erwinia sp.</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >7%</td></tr></tbody></table></table-wrap><p>30%. Other taxa viz: Klebsiella pneumonia, Citrobacter freundii, Providencia stuartii and Erwinia sp. came next according to their case number of isolation, they represented only by 7%.</p></sec></sec><sec id="s3_2"><title>3.2. Antibiotic Susceptibility Testing</title><p>Isolates were selected for antimicrobial susceptibility testing according to Kirby-Bauer disc diffusion techniques on Mueller Hinton agar using the following antibiotic discs (Oxoid): gentamycin 10 μg, Penicillin G, tetracycline 30 μg, Ampicillin 10 μg, chloramphenicol (C) 30 μg, Rifampicin 25 μg, Streptomycin 5 μg, cefotaxime 15 μg. The zone of inhibition was interpreted according to Clinical Laboratory Standard Institute [<xref ref-type="bibr" rid="scirp.75802-ref35">35</xref>] . Multidrug resistance was defined as resistance to ≥4 antimicrobials [<xref ref-type="bibr" rid="scirp.75802-ref36">36</xref>] .</p><p>Data of <xref ref-type="table" rid="table4">Table 4</xref> revealed that while some tested species resistant to most antibiotics, these include: Escherichia coli, Proteus mirabilis, Klebsiella pneumonia and Providencia stuartii; others susceptible e. g. Citrobacter freundii, Erwinia sp.</p></sec><sec id="s3_3"><title>3.3. Fungal Counts</title><p>The distribution pattern of mycobiota based on the presence/absence in fish part (skin, gill, intestine) under investigation showed that recorded taxa could be temporarily classified into three groups (<xref ref-type="table" rid="table5">Table 5</xref>).</p><p>Group 1, comprises taxa of occurrence restricted to one part only (8 species) e,g. Acremonium sp, Aspergillus versicolor, Fusarium solani.</p><p>Group 2, consists of species occurring in two fish parts (6 species) e.g. Alternaria alternarta, Aspergillus flavus, Fusarium oxysporum and Trichoderma sp.</p><p>Group 3, contains species of common occurrence to almost all fish parts (3 species) e.g. Aspergillus niger, Aspergillus terreus, Cladosporium cladosporioides and Penicillium cyclopium.</p><p>Data of <xref ref-type="table" rid="table5">Table 5</xref> and <xref ref-type="fig" rid="fig2">Figure 2</xref> also revealed that, the prevailing genus is Aspergillus by showing a spectrum of four species; Penicillium comes next by revealing three species. The remaining taxa were represented only by two or one species.</p><p>In view of spectrum of species the range of species varied among fish parts. The richness of species in intestine showed the highest spectrum by obtaining</p><fig id="fig2"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref></label><caption><title> Species Richness of Isolated Genera</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/10-8203939x3.png"/></fig><table-wrap id="table4" ><label><xref ref-type="table" rid="table4">Table 4</xref></label><caption><title> Antibiotic susceptibility testing</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Antibiotic Species</th><th align="center" valign="middle" >ce,fotaxime</th><th align="center" valign="middle" >Chloramphenicol</th><th align="center" valign="middle" >Streptomycin</th><th align="center" valign="middle" >Rifampicin</th><th align="center" valign="middle" >Ampicillin</th><th align="center" valign="middle" >Tetracycline</th><th align="center" valign="middle" >Penicillin G</th><th align="center" valign="middle" >Gentamycin</th></tr></thead><tr><td align="center" valign="middle" >Escherichia coli</td><td align="center" valign="middle" >R<sup>*</sup></td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S<sup>*</sup></td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td></tr><tr><td align="center" valign="middle" >Proteus mirabilis</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td></tr><tr><td align="center" valign="middle" >Klebsiella pneumonia</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td></tr><tr><td align="center" valign="middle" >Citrobacter freundii</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td></tr><tr><td align="center" valign="middle" >Providencia stuartii</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td></tr><tr><td align="center" valign="middle" >Erwinia sp.</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >S</td></tr></tbody></table></table-wrap><p>R* = resistant, S*= susceptible.</p><p>15 species; followed by gill by accommodating 11 species. Skin came last one by being revealed only 9 species (<xref ref-type="fig" rid="fig3">Figure 3</xref>).</p><p>It’s worthy to mention here that during this investigation we noticed that Aspergillus terreus induce disease in the tilapia and this considers a new record in Egypt (<xref ref-type="fig" rid="fig4">Figure 4</xref>). However this, from human health point of view, is very important because A. terreus produce mycotoxins.</p></sec></sec><sec id="s4"><title>4. Discussion</title><p>Fish is considered one of the most important sources of human dietary animal protein worldwide, especially in Egypt as well as other African countries [<xref ref-type="bibr" rid="scirp.75802-ref37">37</xref>] . Lake Manzala is exposed to many pollutants including untreated sewage, agricultural and industrial wastes which compromise the health state of the fisher</p><table-wrap id="table5" ><label><xref ref-type="table" rid="table5">Table 5</xref></label><caption><title> Fungal biota isolated from fish parts</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="2"  >Fish part Fungal species</th><th align="center" valign="middle" ></th><th align="center" valign="middle" >presence/absence</th><th align="center" valign="middle" ></th></tr></thead><tr><td align="center" valign="middle" >Skin</td><td align="center" valign="middle" >Gills</td><td align="center" valign="middle" >Intestine</td></tr><tr><td align="center" valign="middle" >Acremonium sp</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Alternaria alternarta</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td></tr><tr><td align="center" valign="middle" >Aspergillus flavus</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Aspergillus niger</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Aspergillus terreus</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Aspergillus versicolor</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Chatomium globosum</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td></tr><tr><td align="center" valign="middle" >Cladosporium cladosporioides</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Cladosporium sp</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Fusarium oxysporum</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Fusarium solani</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >----</td></tr><tr><td align="center" valign="middle" >Geotrichum candidum</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td></tr><tr><td align="center" valign="middle" >Mucor hiemalis</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Penicillium chrysogenum</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td></tr><tr><td align="center" valign="middle" >Penicillium citrinum</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Penicillium cyclopium</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Rhizopus stolonifer</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Sporotherx sp</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Trichoderma koningii</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td></tr><tr><td align="center" valign="middle" >Trichoderma sp</td><td align="center" valign="middle" >+</td><td align="center" valign="middle" >----</td><td align="center" valign="middle" >+</td></tr></tbody></table></table-wrap><p>men and the population inhabiting the contaminated areas. Fish samples of Lake Manzala were found to have very high contents of bacterial pathogens as well as contaminant with different mycotoxin producing fungal species. Microorganisms from human origin such as E. coli, S. aureus and Klebsiella have been found to survive and multiply in the gut and tissues of fish which render fish a potential source of human disease over long periods [<xref ref-type="bibr" rid="scirp.75802-ref38">38</xref>] .</p><p>In this study different type of bacteria of human importance were isolated from tested fish (Oreochromis niloticus) catches from Lake Manzala. Our data revealed that recorded bacteria belong to six genera of which Escherichia coli comes first by being recording thirty number case of isolation constituting 36%, it followed by Proteus mirabilis which is represented by twenty four number case of isolation accounting for 30%. Other taxa viz: Klebsiella pneumonia, Citrobacter freundii, Providencia stuartii. Most fish related food borne illnesses are regarded to Enterobacteriaceae family.</p><p>Our results are in corresponding with: [<xref ref-type="bibr" rid="scirp.75802-ref39">39</xref>] found when analyzing fish; all the fish samples were contaminated on surface and internally with very high amounts of pathogenic bacteria. This confirms that Lake Manzala fish (tilapia) is</p><fig id="fig3"  position="float"><label><xref ref-type="fig" rid="fig3">Figure 3</xref></label><caption><title> Spectrum of fungal species isolated from fish parts</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/10-8203939x4.png"/></fig><fig-group id="fig4"><label><xref ref-type="fig" rid="fig4">Figure 4</xref></label><caption><title> (a) Fish surface showing lesions in the skin; (b) Plate showing colony morphology of Aspergillus terreus; (c) Micromorphology conidiophore &amp; head (magnification 400&#180;); (d) Blastoconidia (magnification 400&#180;).</title></caption><fig id ="fig4_1"><label> (b)</label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/10-8203939x5.png"/></fig><fig id ="fig4_2"><label>(c)</label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/10-8203939x6.png"/></fig><fig id ="fig4_3"><label> (d)</label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/10-8203939x7.png"/></fig><fig id ="fig4_4"><label></label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/10-8203939x8.png"/></fig></fig-group><p>highly polluted and dangerous for human health. [<xref ref-type="bibr" rid="scirp.75802-ref40">40</xref>] found Enterobacteriaceae (3.5 &#180; 10<sup>5</sup> cfu/g) in crayfish from the Nile River. [<xref ref-type="bibr" rid="scirp.75802-ref41">41</xref>] [<xref ref-type="bibr" rid="scirp.75802-ref42">42</xref>] also found that bacteria belonging to Enterobacteriaceae family were the predominant isolates in the fish samples. [<xref ref-type="bibr" rid="scirp.75802-ref43">43</xref>] found that microbial quality of the tilapia indicated that all tissue samples except muscle tissues were contaminated with fecal coliforms where Escherichia coli is the most common contaminant and is often encountered in high numbers. [<xref ref-type="bibr" rid="scirp.75802-ref44">44</xref>] found that total coliforms count range in fish was between 3.0 &#180; 10<sup>3</sup> - 7.5 &#180; 10<sup>6</sup>. [<xref ref-type="bibr" rid="scirp.75802-ref45">45</xref>] in his study isolated of Enterobacteriacaea as 55% from collected samples indicated public health hazards and concern, particularly isolation of some highly pathogenic agents such as Salmonella spp., Shigella spp., as well as the pathogenic E. coli., and potential pathogenic organisms such as Klebsiella spp., Citrobacter spp., and Proteus spp. [<xref ref-type="bibr" rid="scirp.75802-ref46">46</xref>] reported that isolation of some most pathogenic organisms such as Salmonella spp., E. coli and potential pathogenic organisms as Klebsiella spp., Citrobacter spp. and Proteus spp., from fish and fish products gives an indication about environmental fecal pollution of fish. [<xref ref-type="bibr" rid="scirp.75802-ref47">47</xref>] notified that the presence of coliforms above the acceptable limit in fish offered a risk to the consumers. This is because coliforms grow rapidly at ambient temperatures and spoil the fish in a short period of time.</p><p>Our results are also in consistent with data obtained by: [<xref ref-type="bibr" rid="scirp.75802-ref48">48</xref>] they revealed a moderate level of bacterial contamination of fish sold in supermarkets and by street vendors. The results obtained by [<xref ref-type="bibr" rid="scirp.75802-ref14">14</xref>] indicate that these rivers may be potential pathways for human and other animal contamination with Salmonella spp., filamentous fungi, and yeasts, which contribute to the pollution of marine waters and the surrounding environment. [<xref ref-type="bibr" rid="scirp.75802-ref49">49</xref>] Who found bacteria belonging to the Enterobacteriaceae family as predominant in whole gutted and filleted sea bass. The emerging pathogen, Enterobacter sakazaki, causes a lot of food borne outbreaks in children, elderly and immuno-compromised patients. The presence of these opportunistic and pathogenic members of bacteria in fish represents a threat to vulnerable groups in society [<xref ref-type="bibr" rid="scirp.75802-ref50">50</xref>] .</p><p>Occurrence of E. coli, Klebsiella, Proteus and Brucella in fish may result from indiscriminate deposition of human and animal excreta as well as other environmental wastes into ponds and rivers that harbor fish or through washing of land surfaces into water bodies during the rainy season [<xref ref-type="bibr" rid="scirp.75802-ref11">11</xref>] . Free roaming animals especially dogs and birds contribute to fecal contamination of surface water and ponds [<xref ref-type="bibr" rid="scirp.75802-ref51">51</xref>] [<xref ref-type="bibr" rid="scirp.75802-ref52">52</xref>] . These microorganisms in water may carry gene of multi drug resistance that are transferable between human, animals and the environment [<xref ref-type="bibr" rid="scirp.75802-ref53">53</xref>] .</p><p>Fungal analysis of tested tilapia fish samples based on dilution-plating technique using Czapek’s-yeast extract agar media revealed that 12 genera belonging to 20 fungal species were identified (<xref ref-type="table" rid="table5">Table 5</xref>). The genera of highest occurrence were Aspergillus (4 species) and Penicillium (3 species) respectively. A. niger, A. terreus A. flavus; P. cyclopium were the most common species. The remaining fungal genera and species were less frequent. Most of the recorded fungal species in this study had identified before from fresh water fish [<xref ref-type="bibr" rid="scirp.75802-ref54">54</xref>] [<xref ref-type="bibr" rid="scirp.75802-ref55">55</xref>] . However, our findings are in agreement with results obtained in Egypt and other countries all over the world: [<xref ref-type="bibr" rid="scirp.75802-ref15">15</xref>] reported the occurrence of different fungal species of genera including, Penicillium, Acremonium, Alternaria, Fusarium, Aspergillus, Mucor, Saprolegnia and Cladosporium from the eggs and brood stock of rainbow trout. [<xref ref-type="bibr" rid="scirp.75802-ref56">56</xref>] can be able to isolate Paeciliomyces spp., Aspergillus spp., Penicillium sp., and Trichoderma sp. from Nile tilapia, Tilapia zilli. [<xref ref-type="bibr" rid="scirp.75802-ref57">57</xref>] Isolated moulds belonged to the following genera: Saprolegnia, Aspergillus, Fusarium, Mucor, Penicillium, Rhizopus, Scopulariopsis, Paeciliomyces and Curvularia as normal mycobiota and these species may be regarded as opportunistic pathogens. [<xref ref-type="bibr" rid="scirp.75802-ref58">58</xref>] isolated 7 fungal species from stockfish in Nigeria and these included A. flavus, A. fumigatus, A. niger, Trichophyton verrucosum, Rhizopus sp Penicillium spp. and Mucor sp. [<xref ref-type="bibr" rid="scirp.75802-ref59">59</xref>] isolated Penicillium expansum, Penicillium citrinium; Aspergillus terreus, Aspergillus sp; Alternaria spp. and 11 other fungal species from infected eggs of rainbow trout. [<xref ref-type="bibr" rid="scirp.75802-ref60">60</xref>] isolated five different species of fungi including Fusarium, Aspergillus, Rhizopus, Mucor, and Penicillium from 8 edible smoke-dried freshwater fishes. [<xref ref-type="bibr" rid="scirp.75802-ref61">61</xref>] reported that aspergillomycosis has been principally described in African fish, especially the tilapia Oreochromis sp. A number of Aspergillus species such as A. flavus, A. japonicus, and A. terreus are involved in this infection.</p><p>Our results however, are also in compatible with outcomes of many investigations in Egypt and elsewhere: [<xref ref-type="bibr" rid="scirp.75802-ref62">62</xref>] - [<xref ref-type="bibr" rid="scirp.75802-ref75">75</xref>] .</p><p>Pollution of fish with mycotoxin produced by fungi such as Aspergillus, Fusarium, and Penicillium likely lead to accumulation of these toxins in fish tissues. The risk for mycotoxins contamination may occur as a result of nourishment by the contaminant fish tissues in considerable quantities. Aflatoxins, Ochratoxin A and sterigmatocystin are thermostable and have an ability to accumulate in the organism [<xref ref-type="bibr" rid="scirp.75802-ref76">76</xref>] . Subsequently processing of fish does not remove or reduce the presence of mycotoxins in fish tissues. However, there are a lot studies in which the pollution with mycotoxin mainly Aspergillus has been treat e.g. [<xref ref-type="bibr" rid="scirp.75802-ref77">77</xref>] [<xref ref-type="bibr" rid="scirp.75802-ref78">78</xref>] .</p><p>Multi drug resistance to strains is defined as being resistant to four or more antimicrobial agents [<xref ref-type="bibr" rid="scirp.75802-ref35">35</xref>] but sometimes as low as two antibiotics from different classes [<xref ref-type="bibr" rid="scirp.75802-ref79">79</xref>] . The result of this study revealed the presence of multidrug resistant bacteria from Oreochromis niloticus fishes. Some isolates showed high resistance to almost all tested antibiotics viz: Providencia stuartii and E. coli. Some exhibited resistance like Proteus mirabilis &amp; Klebsiella pneumonia. Still other displayed moderate resistance the results of this study agree with the obtained data by many investigators: [<xref ref-type="bibr" rid="scirp.75802-ref80">80</xref>] - [<xref ref-type="bibr" rid="scirp.75802-ref85">85</xref>] .</p><p>Presence of E. coli in food indicates the possible cause of many gastro-intes- tinal diseases [<xref ref-type="bibr" rid="scirp.75802-ref86">86</xref>] and may constitute potential danger of antibiotic resistance transfer from aquatic bacteria to human.</p></sec><sec id="s5"><title>5. Conclusions</title><p>The presence of diverse enteric bacteria in fish indicates the contamination from Lake Manzala and handlers, representing a potential hazard to human health especially those who are sick or are on immunosuppressive drugs. Stringent regulations and monitoring activities coupled with food safety training of suppliers (fishermen and traders) and consumers on various aspects of good hygiene practice and good manufacturing practice is much recommended. The findings in this study emphasize the importance of studying multiple genera of bacteria from fishes as sources of human exposure to antibiotic resistance strains. Therefore presence of multiple bacteria from fish and fish handlers poses not only risk of disease to the fishes but public health hazard to fish handlers and consumers in general.</p><p>The diversity and density of fungi may be, in fact, valid indicators of Lake Pollution and whether they represent a health hazard to the users of these waters are questions to be addressed by further microbiological investigation and epidemiological surveys. However, an action plan to protect this Lake and the surrounding environment from sewage and industrial effluents should be devised.</p></sec><sec id="s6"><title>Cite this paper</title><p>Zaky, M.M.M. and Ibrahim, M.E. (2017) Screening of Bacterial and Fungal Biota Associated with Oreochromis niloticus in Lake Manzala and Its Impact on Human Health. Health, 9, 697- 714. https://doi.org/10.4236/health.2017.94050</p></sec></body><back><ref-list><title>References</title><ref id="scirp.75802-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">WRI (World Resources Institute) (1994) World Resources 1994-5. Oxford University Press, New York, 400.</mixed-citation></ref><ref id="scirp.75802-ref2"><label>2</label><mixed-citation publication-type="other" xlink:type="simple">H&amp;#229;stein, T., Hjeltnes, B., Lillehaug, A., Utne Sk&amp;#229;re, J., Berntssen, M. and Lundebye, A.K. 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