<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">AM</journal-id><journal-title-group><journal-title>Applied Mathematics</journal-title></journal-title-group><issn pub-type="epub">2152-7385</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/am.2017.84042</article-id><article-id pub-id-type="publisher-id">AM-75767</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Physics&amp;Mathematics</subject></subj-group></article-categories><title-group><article-title>
 
 
  The Study on the Phase Structure of the Paul Trap System
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Jaouad</surname><given-names>Kharbach</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mohamed</surname><given-names>Benkhali</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mohamed</surname><given-names>Benmalek</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Ahmed</surname><given-names>Sali</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Abdellah</surname><given-names>Rezzouk</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mohammed</surname><given-names>Ouazzani-Jamil</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>Laboratoire de Physique du Solide, Faculté des Sciences Dhar El Mahraz, Université Sidi Mohamed Ben Abdellah, Fès-Atlas, Morocco</addr-line></aff><aff id="aff2"><addr-line>Université Privée de Fès, Laboratoire Systèmes et Environnements Durables, Lot. Quaraouiyine Route Ain Chkef, Fès, Morocco</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>kharbach@gmail.com(JK)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>13</day><month>04</month><year>2017</year></pub-date><volume>08</volume><issue>04</issue><fpage>525</fpage><lpage>536</lpage><history><date date-type="received"><day>31,</day>	<month>August</month>	<year>2016</year></date><date date-type="rev-recd"><day>25,</day>	<month>April</month>	<year>2017</year>	</date><date date-type="accepted"><day>28,</day>	<month>April</month>	<year>2017</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  In this article, the classic dynamic of Paul trap problem is investigated. We give a complete description of the topological structure of Hamiltonian flows on the real phase space. Using the surgery’s theory of Fomenko Liouville tori, all generic bifurcations of the common level sets of the first integrals were described theoretically. We give also an explicit periodic solution for singular values of the first integrals. Numerical investigations are carried out for all generic bifurcations and we observe order-chaos transition when the critical value of a control parameter is varied.
 
</p></abstract><kwd-group><kwd>Hamiltonian System</kwd><kwd> Integrability</kwd><kwd> Bifurcation</kwd><kwd> Liouville Tori</kwd><kwd> Periodic Solutions</kwd><kwd> Poincar&#233; Section</kwd><kwd> Chaos</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>In recent years, the study of dynamic systems has been undertaken in a wide range of fields, which are located at the crossroads of differential geometry, algebraic geometry, number theory, Lie algebra, Intellectual and material means.</p><p>A considerable renewed interest appeared for Hamiltonian dynamic systems with two degrees of freedom, one of which is the study of the topological properties of the flow of these systems, their integrability, their chaotic behavior, the study of Periodic solutions and their bifurcation.</p><p>A first fundamental task in this field was the search for integrable systems which give rise to non chaotic behavior. For a Hamiltonian system with n degrees of freedom, the most general definition is that of Liouville. In addition to direct analytical methods, various criteria are developed to determine candidates for integrability, namely the Painlev&#233; criterion, the Ziglin criterion and the Poincar&#233; sections.</p><p>Integrability is clearly a central issue in understanding the origins and implications of the behaviour of the dynamical systems. Physically interesting integrable systems are rare, and consequently, it stirs up considerable excitement when one is discovered. Moreover, the Painlev&#233; analysis as described in [<xref ref-type="bibr" rid="scirp.75767-ref1">1</xref>] [<xref ref-type="bibr" rid="scirp.75767-ref2">2</xref>] has been contributing -for some time now-a great deal in this direction.</p><p>Most integrable problems characterizing the motion of a rigid body around a fixed point were collected in [<xref ref-type="bibr" rid="scirp.75767-ref3">3</xref>] , furthermore, the study by Mikhail P. Kharlamov et al. and A.V. Tsiganov et al., as described in [<xref ref-type="bibr" rid="scirp.75767-ref4">4</xref>] [<xref ref-type="bibr" rid="scirp.75767-ref5">5</xref>] has been contributing for some time already in this direction and others types integrable problems describing the motion of a particle in the Euclidean plane were also collected in the Hietarinta study [<xref ref-type="bibr" rid="scirp.75767-ref6">6</xref>] nevertheless the problems correspond to the trapping of Ions [<xref ref-type="bibr" rid="scirp.75767-ref7">7</xref>] [<xref ref-type="bibr" rid="scirp.75767-ref8">8</xref>] , and new integrable problems in this field have been added by many authors.</p><p>We examine here an integrable mechanical system which exhibits a great richness of behavior. The proposed system is the system of Paul trap, the Hamiltonian flows are generated by the Hamiltonian:</p><p>H ( q , p , λ ) = 1 2 ( P x 2 + P y 2 + P z 2 ) + 1 r + 1 2 ( x 2 + y 2 + λ 2 z 2 ) (1)</p><p>where λ is a constant, and r = x 2 + y 2 + z 2 , is known to be integrable in the following three cases [<xref ref-type="bibr" rid="scirp.75767-ref9">9</xref>] : λ = &#177; 0.5 , &#177; 1 , &#177; 2 it is also demonstrated that the ion dynamics in a Paul trap can be classified into four dynamical regimes [<xref ref-type="bibr" rid="scirp.75767-ref10">10</xref>] . This classification seems to be rather universal and shows up in the dynamics of periodically perturbed polar molecules, the hydrogen atom in strong magnetic fields [<xref ref-type="bibr" rid="scirp.75767-ref11">11</xref>] , and the periodically perturbed hydrogen atom.</p><p>The plan of the paper is as follows: In Section 2 we give a detailed description of the real phase space topology of the system (1) in the integrable λ = &#177; 1 case, for doing that, we separate the Hamiltonian system from two canonical transformations. This separability implies a description of the topology of the common-level sets of the first integrals (invariant level sets) however, in our study we consider the common-level sets M ℝ of the first integrals:</p><p>M ℝ = { ( x , y , z , P x , P y , P z ) ∈ ℝ 6 ; H = h , F = f } (2)</p><p>where H and F are respectively the Hamiltonian and the second invariant of the system.</p><p>According to the classical Liouville theorem, for noncritical values of the first integrals h and f, the regular level sets M ℝ of a completely integrable Hamiltonian system consists of tori. All generic bifurcations of these tori, corresponding to these critical values will be described by using Fomenko theorem [<xref ref-type="bibr" rid="scirp.75767-ref12">12</xref>] . We also give in Section 2.3 an explicit periodic solution for singular level sets of bifurcation studied above. Finally, for nonintegrable regimes we carry out a numerical analysis to bring out the order-chaos transition.</p><p>In the Hamiltonian (1) there is a singularity at r = 0 , which necessitates an infinitesimally small step size for numerical integration of the corresponding equation of motion. So, one has to introduce appropriate coordinate transformation to remove this singularity. For this purpose, you can use two canonical transformations, the first is:</p><p>{ x = ρ cos ( φ ) ,   P x = P ρ cos ( φ ) − P φ sin ( φ ) ρ y = ρ sin ( φ ) ,   P y = P ρ sin ( φ ) + P φ cos ( φ ) ρ z = z ,   P z = P z (3)</p><p>here P ρ , P φ and P z are the canonical momenta conjugate to the coordinates ρ , φ and z respectively.</p><p>Then, Equation (1) Can be rewritten as for λ = &#177; 1</p><p>H = 1 2 ( P ρ 2 + P z 2 ) + 1 2 ( ρ 2 + z 2 ) + 1 r + P φ 2 2 ρ 2 ,     r = ρ 2 + z 2 (4)</p><p>Equation (4) is a three degrees of freedom Hamiltonian system in which φ is a cyclic variable, and so the corresponding canonically conjugate momenta P φ is conserved, or P φ = m = const .</p><p>Then, Equation (4) can be rewritten as</p><p>H = 1 2 ( P ρ 2 + P z 2 ) + 1 2 ( ρ 2 + z 2 ) + 1 r + m 2 2 ρ 2 (5)</p><p>the second canonical transformation is:</p><p>{ ρ = r cos ( θ ) ,   P ρ = P r cos ( θ ) − P θ sin ( θ ) r z = r sin ( θ ) ,   P z = P r sin ( θ ) + P θ cos ( θ ) r (6)</p><p>Then, Equation (5) can be rewritten as</p><p>H = 1 2 P r 2 + 1 2 r 2 P θ 2 + 1 2 m 2 r 2 ( cos ( θ ) ) 2 + 1 2 r 2 + 1 r (7)</p><p>and the Hamilton’s equations of motion of (7) start as</p><p>{ d r d t = r ˙ = P r ,   d P r d t = P ˙ r = P θ 2 r 3 − r + 1 r 2 d θ d t = θ ˙ = P θ r 2 ,   d P θ d t = P ˙ θ = 0 (8)</p><p>which is obtained by making P φ = m = 0 .</p></sec><sec id="s2"><title>2. Topological Analysis</title><p>In the integrable λ = &#177; 1 case, we recall the Hamilton-Jacobi equation corresponding to the system (8) that separates into r , θ coordinates defined by</p><p>ρ = r cos ( θ ) ,   z = r sin ( θ )   and   φ = const (9)</p><p>It is easy to check that P r and P θ can be expressed in terms of r and θ characteristic polynomials in the following way:</p><p>{ P r = &#177; 1 r G ( r ) P θ = &#177; Q ( θ ) = &#177; 2 F = const where #Math_34# (10)</p><p>And F denotes the second integral of motion:</p><p>F = r 2 h − 1 2 r 2 P r 2 − 1 2 r 4 − r = 1 2 P θ 2 (11)</p><p>F = f = 1 2 ( ρ P z − z P ρ ) 2 = const (12)</p><p>With the rescaled time variable: d t = d τ r .</p><p>Therefore, the differential equations satisfied by r and θ are:</p><p>{ d r G ( r ) = d τ d θ Q ( θ ) = d t (13)</p><sec id="s2_1"><title>2.1. Topology of Regular Level Set</title><p>In order to give a complete description of the topology of M ℝ , we find first the bifurcation diagram B in the ( h , f ) -plane, i.e. the set of the critical values of the energy-momentum mapping</p><p>( ρ , z , P ρ , P z ) → ( H , F ) (14)</p><p>Definition. The bifurcation diagram of an integrable system is defined to be the region of possible motion depicted on the plane of first integrals ( h , f ) [<xref ref-type="bibr" rid="scirp.75767-ref13">13</xref>] .</p><p>It turns out (like in the H&#233;non-Heils [<xref ref-type="bibr" rid="scirp.75767-ref14">14</xref>] , Gorjatchev-Tchaplygin top [<xref ref-type="bibr" rid="scirp.75767-ref15">15</xref>] , Fokker-Planck system [<xref ref-type="bibr" rid="scirp.75767-ref16">16</xref>] [<xref ref-type="bibr" rid="scirp.75767-ref17">17</xref>] and Kolossoff potential [<xref ref-type="bibr" rid="scirp.75767-ref18">18</xref>] [<xref ref-type="bibr" rid="scirp.75767-ref19">19</xref>] , the phase topology of a special case of Goryachev integrability in rigid body dynamics [<xref ref-type="bibr" rid="scirp.75767-ref20">20</xref>] ) that B is exactly the discriminant locus of the polynomial G ( r ) whose coefficients are functions of h and f.</p><p>B = { ( h , f ) ∈ ℝ 2 : discriminant ( G ( r ) ) = 0 } (15)</p><p>where</p><p>B = { ( h , f ) ∈ ℝ 2 : 128 h 3 − 432 + 512 h 4 f − 2048 h 2 f 2 − 2304 h f + 2048 f 3 = 0 , f = 1 2 P θ 2 ≥ 0 }</p><p>The set M ℝ \ B consists of three connected components (as it is shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>). Thus, in each connected component of the set M ℝ \ B the level set M ℝ has the same topological type and this latter may be changed only if ( h , f ) passes through B.</p><p>As θ is acyclical variable ⇒ θ ∈ [ 0 , 2 π ] .</p><p>Theorem. The set M ℝ \ B consists of three connected and nonintersecting with each other domains. The topological type of M ℝ is a disjoint union of two-dimensional two-tori 2T, two-dimensional tori T and the empty set ϕ .</p><p>Proof. Consider the complexified system</p><p>M ⊄ = { ( X , P ) ∈ ⊄ 4 ; H = h , F = f } (16)</p><p>consider also the elliptic curves</p><p>Γ 1 : { ω 1 2 = G ( r ) } and Γ 2 : { ω 2 2 = Q ( θ ) } (17)</p><p>and the corresponding Riemann surfaces R 1 and R 2 of the same genus. We obtain the explicit solutions of the initial problem (13) by solving the Jacobi inversion problem [<xref ref-type="bibr" rid="scirp.75767-ref21">21</xref>] .</p><p>Define the natural projection</p><p>π : M ⊄ → Γ 1 ⊗ Γ 2 (18)</p><p>(where &#196; is the symmetric product), and the complex conjugation on M ⊄</p><p>ξ : ( ρ , z , P ρ , P z ) → ( ρ &#175; , z &#175; , P &#175; ρ , P &#175; z ) (19)</p><p>Consider also the natural projection η on the Riemann surface R = R 1 ⊗ R 2 given in ( r , θ ) coordinates by η : ( r , θ ) → ( r &#175; , θ &#175; ) .</p><p>It induces an involution on the Jacobi variety and hence on M ⊄ by the natural projection π . By Equations (10) and (13) imply that this involution η coincides with the complex conjugation (19) on M ⊄ . The upshot is that in order to describe M ℝ it is enough to study the projection:</p><p>π : M ⊄ → J a c ( R ) = Γ 1 ⊗ Γ 2 (20)</p><p>Definition. A connected component of the set of fixed points of τ on the curve Γ 1 and Γ 2 is called an oval.</p><p>To determine the ovals of Γ 1 and Γ 2 it suffices to study the real roots of the polynomial G ( r ) for different values of h and f as shown in <xref ref-type="table" rid="table1">Table 1</xref>. Using the Formulae (10), and the condition that ( ρ , z , P ρ , P z ) ∈ ℝ 4 we find exactly two admissible ovals whose projections on the r – p l a n and θ − p l a n are given by Δ 1 and Δ 2 (see <xref ref-type="table" rid="table2">Table 2</xref>). The product of the admissible ovals in Γ 1 ⊗ Γ 2 and the projection π of M ℝ such as,#Math_89#, gives :</p><p>1) M ℝ is a two-dimensional two-tori 2T in domain 3.</p><p>2) M ℝ is a two-dimensional tori T in domain 2.</p><p>3) M ℝ is the empty set in domain 1.</p></sec><sec id="s2_2"><title>2.2. Topology of Singular Level Sets</title><p>Suppose now that the constants h and f are changed in such a way that ( h , f ) passes through the bifurcation diagram B. Then the topological type of M ℝ may change and the bifurcation of Liouville tori takes place. In order to describe all generic bifurcations of Liouville tori, we use Fomenko’s theorem of bifurcation for Liouville tori. We can have in our case two types of bifurcation (see <xref ref-type="fig" rid="fig2">Figure 2</xref>).</p><p>To prove that, it suffices to look at the bifurcations of roots of the polynomial G ( r ) , the correspondence between bifurcation of roots and Liouville tori is shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>.</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Topological type of M ℝ and the real roots of the polynomials G ( r ) for ( h , f ) ∈ ℝ 2 \ B </title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Domain</th><th align="center" valign="middle" >Real roots of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x101.png" xlink:type="simple"/></inline-formula></th></tr></thead><tr><td align="center" valign="middle" >1</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle" >2</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x102.png" xlink:type="simple"/></inline-formula></td></tr><tr><td align="center" valign="middle" >3</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x103.png" xlink:type="simple"/></inline-formula></td></tr></tbody></table></table-wrap><table-wrap id="table2" ><label><xref ref-type="table" rid="table2">Table 2</xref></label><caption><title> Admissible ovals and topological type of M ℝ for ( h , f ) ∈ ℝ 2 \ B </title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Domain</th><th align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x106.png" xlink:type="simple"/></inline-formula></th><th align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x107.png" xlink:type="simple"/></inline-formula></th><th align="center" valign="middle" >Topological type of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x108.png" xlink:type="simple"/></inline-formula></th></tr></thead><tr><td align="center" valign="middle" >1</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x109.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x110.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x111.png" xlink:type="simple"/></inline-formula></td></tr><tr><td align="center" valign="middle" >2</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x112.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x113.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" >T</td></tr><tr><td align="center" valign="middle" >3</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x114.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x115.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" >2T</td></tr></tbody></table></table-wrap></sec><sec id="s2_3"><title>2.3. Periodic Solutions</title><p>When the bifurcation of Liouville tori takes place, the level set M ℝ becomes completely degenerate. Then we can have exceptional families of periodic solutions. It is seen from <xref ref-type="table" rid="table3">Table 3</xref> that if ( h , f ) is on the smooth curves C 0 (see <xref ref-type="fig" rid="fig1">Figure 1</xref>), M ℝ contains a isolated circle S which is periodic solution. Consider now a fixed periodic solution belonging to the curve C 0 . The parameter θ takes values in the admissible interval [ 0 , 2 π ] and r is equal to the double root of the polynomial G ( r ) , r 1 = r 2 = k (see <xref ref-type="table" rid="table3">Table 3</xref>).</p><p>Then we obtain from (9) and (10) the following parameterization of fixed periodic solution:</p><p>{ ρ = k cos θ ,   P ρ = − sin θ k Q ( θ ) z = k sin θ ,   P z = cos θ k P θ (21)</p><p>Knowing that</p><p>Q ( θ ) = P θ 2 = 2 f (22)</p><p>The expression of P ρ can put in the form:</p><p>P ρ = − sin ( θ ) k 2 f (23)</p><p>Using the differential equations of Hamilton</p><p>d t = d θ Q ( θ ) = d θ 2 f ⇒ θ = 2 f t (24)</p><p>It is easy to deduce solution</p><p>z ( t ) = k sin ( 2 f t ) (25)</p><p>and the period associated is given by</p><p>T θ = 2 π 2 f (26)</p></sec></sec><sec id="s3"><title>3. Numerical Illustration</title><p>Using a surface of the section map, we give numerical illustrations of the topological analysis studied in Section 2.</p><p>For fixed values of energy h and f varies, the Liouville tori contained in the level set H = h and F = f change their topological type. The surfaces of section map shown in <xref ref-type="fig" rid="fig3">Figure 3</xref> gives an illustration of the sequence of bifurcations</p><table-wrap id="table3" ><label><xref ref-type="table" rid="table3">Table 3</xref></label><caption><title> Topological type of M ℝ for ( h , f ) ∈ B </title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Curve</th><th align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x156.png" xlink:type="simple"/></inline-formula></th><th align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x157.png" xlink:type="simple"/></inline-formula></th><th align="center" valign="middle" >Topological type of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x158.png" xlink:type="simple"/></inline-formula></th></tr></thead><tr><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x159.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x160.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/9-7403347x161.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" >S</td></tr></tbody></table></table-wrap><p>of Liouville tori and the order-chaos transition when one of the system parameters is varied. This map is constructed using a clever method introduced by Poincar&#233; and extended by H&#233;non [<xref ref-type="bibr" rid="scirp.75767-ref22">22</xref>] .</p><p>The Figures 3(a)-(e) represent the sections for five values of the second invariant f = 3.345 , 4.493 , 5.023 , 5.156 , 5.377 and h = 3.016 . These values correspond to five points of domain 2 on the bifurcation diagram B where M ℝ is a two-dimensional tori T. Moreover, the <xref ref-type="fig" rid="fig3">Figure 3</xref>(f) and <xref ref-type="fig" rid="fig3">Figure 3</xref>(g) show the sections for a value of the second invariant f = 0.828 and h = 0.718 . This value corresponds to a point in domain 2 on the bifurcation diagram B where M ℝ is a two-dimensional T.</p><p>The fixed points in <xref ref-type="fig" rid="fig3">Figure 3</xref>(h) and <xref ref-type="fig" rid="fig3">Figure 3</xref>(i) show the sections representing the periodic solution where M ℝ is an isolated circle S for h = 1.997 and f = 4.077 , 4.052 on the curve C 0 of B.</p><p>The <xref ref-type="fig" rid="fig3">Figure 3</xref>(m) show the sections for a value of the first invariant h = 4.041 and f = 3.017 . These values correspond to a point of Domain 3 on the bifurcation diagram B where M ℝ is a two-dimensional two-tori 2T.</p><p>The <xref ref-type="fig" rid="fig3">Figure 3</xref>(n) and <xref ref-type="fig" rid="fig3">Figure 3</xref>(o) show the sections corresponding to the bifurcation on the curve C 1 of B for h = 3.0755 , 3.128 and f = 3.017 where M ℝ is a T ∪ S .</p><p>For critical values of a control parameter λ = 1.16 , 1.35 , 1.18 , we observe a fairly random distribution of points which correspond to a dramatic change in the Poincar&#233;sections indicating the order-chaos transition, as it is shown respectively on the <xref ref-type="fig" rid="fig3">Figure 3</xref>(j), <xref ref-type="fig" rid="fig3">Figure 3</xref>(k), <xref ref-type="fig" rid="fig3">Figure 3</xref>(l), and <xref ref-type="fig" rid="fig3">Figure 3</xref>(p).</p></sec><sec id="s4"><title>4. Conclusions</title><p>In this study we have treated the classical dynamics of an integrable Hamiltonian system with two degrees of freedom. The system is characterized by a polynomial dependent on the invariants of the motion H and F. The different results obtained show the capacity of the method used to provide precise information on this Hamiltonian system. We have shown how this system can be converted by canonical transformations to easily exploitable Hamiltonians.</p><p>The very important question that we have studied is the topological analysis of the real invariant manifolds of the system. Fomenko’s theory on surgery and bifurcations of the Liouville tori has been combined with that of the algebraic structure to give a rigorous and detailed description of the topology of the invariant manifolds. For noncritical values of H and F, the variety contains torus or is empty.</p><p>In the same way we have shown how the periodic orbits can be found for singular values of first integrals, how the period of solutions is determined, and how explicit formulas can be established.</p><p>We have also highlighted numerically the topology of the invariant manifolds, the bifurcations of the Liouville tori and the order-chaos transition when the system control parameter varies.</p></sec><sec id="s5"><title>Cite this paper</title><p>Kharbach, J., Benkhali, M., Benmalek, M., Sali1, A., Rezzouk, A. and Ouazzani-Jamil, M. (2017) The Study on the Phase Structure of the Paul Trap System. Applied Mathematics, 8, 525-536. https://doi.org/10.4236/am.2017.84042</p></sec></body><back><ref-list><title>References</title><ref id="scirp.75767-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Bountis, T.C. (1992) What Can Complex Time Tell Us about Real Time Dynamics. 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