<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">OJG</journal-id><journal-title-group><journal-title>Open Journal of Geology</journal-title></journal-title-group><issn pub-type="epub">2161-7570</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ojg.2016.67045</article-id><article-id pub-id-type="publisher-id">OJG-69052</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Earth&amp;Environmental Sciences</subject></subj-group></article-categories><title-group><article-title>
 
 
  Application of Self-Organizing Map for Exploration of REEs’ Deposition
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mohammadali</surname><given-names>Sarparandeh</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Ardeshir</surname><given-names>Hezarkhani</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>Department of Mining and Metallurgical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran, Iran</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>ardehez@aut.ac.ir(AH)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>05</day><month>07</month><year>2016</year></pub-date><volume>06</volume><issue>07</issue><fpage>571</fpage><lpage>582</lpage><history><date date-type="received"><day>8</day>	<month>June</month>	<year>2016</year></date><date date-type="rev-recd"><day>accepted</day>	<month>23</month>	<year>July</year>	</date><date date-type="accepted"><day>26</day>	<month>July</month>	<year>2016</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Varieties of approaches and algorithms have been presented to identify the distribution of elements. Previous researches based on the type of problem, categorized their data in proper clusters or classes. This means that the process of solution could be supervised or unsupervised. In cases, where there is no idea about dependency of samples to specific groups, clustering methods (unsupervised) are applied. About geochemistry data, since various elements are involved, in addition to the complex nature of geochemical data, clustering algorithms would be useful for recognition of elements distribution. In this paper, Self-Organizing Map (SOM) algorithm, as an unsupervised method, is applied for clustering samples based on REEs contents. For this reason the Choghart Fe-REE deposit (Bafq district, central Iran), was selected as study area and dataset was a collection of 112 lithology samples that were assayed with laboratory tests such as ICP-MS and XRF analysis. In this study, input vectors include 19 features which are coordinates x, y, z and concentrations of REEs as well as the concentration of Phosphate (
  
  
  P<sub>2</sub>O<sub>5</sub>
  ) since the apatite is the main source of REEs in this particular research. Four clusters were determined as an optimal number of clusters using silhouette criterion as well as k-means clustering method and SOM. Therefore, using self-organizing map, study area was subdivided in four zones. These four zones can be described as phosphate type, albitofyre type, metasomatic and phosphorus iron ore, and Iron Ore type. Phosphate type is the most prone to rare earth elements. Eventually, results were validated with laboratory analysis.
 
</p></abstract><kwd-group><kwd>Self Organizing Map (SOM)</kwd><kwd> REEs</kwd><kwd> Geochemistry</kwd><kwd> Choghart</kwd><kwd> Central Iran</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Since 1970s, pattern recognition methods have been employed to detect hidden information of economic geology. Applications of clustering algorithms are among the most successful experiences in geochemical exploration. Characterization of the spatial distribution of elements of ore deposits has a guiding role for geological exploration [<xref ref-type="bibr" rid="scirp.69052-ref1">1</xref>] . A combination of mathematical and geological knowledge can be utilized to identify and predict potential exploration targets [<xref ref-type="bibr" rid="scirp.69052-ref2">2</xref>] . Numerous investigations have been conducted in recent years to identify distribution of elements and put the data samples in appropriate clusters. The selection of appropriate method depends on the complexity of the problems. One of these methods is based on artificial neural network. Most of the researches show that an ANN can be applied successfully to engineering problems without any restriction. It has also been seen that the capability (i.e. pattern recognition and memorization) of an ANN is suitable for inherent uncertainties and imperfections found in geochemical problems [<xref ref-type="bibr" rid="scirp.69052-ref3">3</xref>] . An important application of neural network is clustering. Clustering is an unsupervised method of data grouping using a given measure of similarity. Clustering approach attempts to organize unlabeled feature vectors into clusters (natural groups) such that samples within a cluster are similar to each other but differ from those in other clusters [<xref ref-type="bibr" rid="scirp.69052-ref4">4</xref>] . Clustering analysis is an important and useful tool for analyzing large datasets that contain many variables and experimental parameters. Therefore, the application of cluster analysis to complex datasets has attracted a high level of scientific interest in various aspects of geochemistry researches [<xref ref-type="bibr" rid="scirp.69052-ref5">5</xref>] . In order to investigate the distribution of elements, it is essential for a robust classification scheme to cluster chemistry samples into homogeneous groups [<xref ref-type="bibr" rid="scirp.69052-ref6">6</xref>] . Several common clustering techniques have been utilized to divide geochemical samples into similar homogeneous groups with the ultimate objective of characterizing the quality of elements such as principal component analysis, fuzzy k-means clustering technique and Q-mode hierarchical cluster analysis to assess the chemistry of groundwater and identify the geological factors. For example, Ji et al. (2007) developed semi-hierarchical correspondence cluster analysis and showed its application for division of geological units with the help of geochemical data that are systematically collected from an area around Tahe in Heilongjiang Province, north China [<xref ref-type="bibr" rid="scirp.69052-ref7">7</xref>] . Meshkani et al. (2011) used hierarchical and k-means clustering for identifying the distribution of lead and zinc in Sanandaj-Sirjanmetalogenic zone in Iran [<xref ref-type="bibr" rid="scirp.69052-ref8">8</xref>] . Ziaii et al. (2009) introduced the neuro-fuzzy method for separating anomalies and showed that this method is more efficient than using multivariate statistics [<xref ref-type="bibr" rid="scirp.69052-ref9">9</xref>] . These methods are efficient at geochemical samples by chemical similarities, but are not useful for the visual assessment of the results and presentation of maps showing geochemical facies [<xref ref-type="bibr" rid="scirp.69052-ref6">6</xref>] . The recently proposed method of the self-orga- nizing maps (SOM) is likely to become a complementary or alternative tool to the clustering methods [<xref ref-type="bibr" rid="scirp.69052-ref10">10</xref>] [<xref ref-type="bibr" rid="scirp.69052-ref11">11</xref>] .</p><p>The SOM is related to adaptive k-means, but performs a topological feature map that is more complex than just cluster analysis. After training, the input vectors are spatially ordered in the array, i.e. the neighboring input vectors in the map are more similar than the more remote ones [<xref ref-type="bibr" rid="scirp.69052-ref12">12</xref>] . The self-organizing maps approach is based on the unsupervised learning algorithm, and has excellent visualization capabilities, including techniques that apply the reference vectors of the SOM to give an informative picture of the data [<xref ref-type="bibr" rid="scirp.69052-ref13">13</xref>] . Sun et al. (2009) applied SOM method to classify Pb-Zn-Mo-Ag anomalies in the mining area around Sheduolong in Qinghai Province, China [<xref ref-type="bibr" rid="scirp.69052-ref14">14</xref>] . In 2012, Abedi et al. used SOM method and fuzzy k-means (FCM) to provide deposit exploration map for Now Chun copper deposit in Iran. They used vectors with 13 features of three layers including geological, geophysical and geochemical information as input data [<xref ref-type="bibr" rid="scirp.69052-ref15">15</xref>] . The topology preservation property makes the SOM a popular choice in data analysis. The most important advantages of SOM such as visualization capability and the output map, lead the authors to use this method for having a better conclusion about REEs’ distribution in the study area. The objective of this paper is to show that the self-organizing map is an applicable and suitable approach for zoning of the deposit based on rare earth elements.</p></sec><sec id="s2"><title>2. Geological Settings of Study Area</title><p>There are significant concentrations of iron ore in central and north east of Iran. Magnetite is the main mineral in most of important Iron ore bodies. Obtrusive elements are often phosphorus and sulfur in the form of apatite, pyrite and seldom chalcopyrite. Iron deposits of Iran can be divided into two main groups, magmatogene and volcano sediments. Metasomatism is the main reason of concentrating in Iron ore deposits of central Iran [<xref ref-type="bibr" rid="scirp.69052-ref16">16</xref>] . <xref ref-type="fig" rid="fig1">Figure 1</xref> shows the geographical location of major iron deposits in Central Iran. Moore and Modabberi (2003) suggested that the separation of an iron oxide melt and the ensuing hydrothermal processes dominated by alkali</p><fig id="fig1"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref></label><caption><title> Geological map of Bafq mineral province [<xref ref-type="bibr" rid="scirp.69052-ref29">29</xref>] </title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x7.png"/></fig><p>metasomatism, were both involved to different degrees in the formation of Choghart and other similar deposits in central Iran [<xref ref-type="bibr" rid="scirp.69052-ref17">17</xref>] .</p><p>The Choghart deposit occurred in the Bafq mining district, which is part of the narrow N-S trending Pan- African rift zone at the eastern margin of the so-called Lut block. The main orebody at Choghart is in the form of a roughly vertical, discordant, pipe-shaped body plunging 73˚NNW and has been explored to a depth of 600 m, where it appears to interfinger with intrusive metasomatized and fragmental wall-rock. The thickness of the metasomatic aureole differs widely. The orebody is hosted by volcanic members (intrusive and extrusive alkali rhyolites) of the epicontinental to continental Infracambrian Esfordi Formation [<xref ref-type="bibr" rid="scirp.69052-ref17">17</xref>] . The orebody and the metamorphosed country rock are cut by several diabasic dikes. The plain that surrounds the orebody and its metamorphosed intrusive and volcanic country rocks are composed of 150 m of Quaternary formations and recent alluvium, of fine grained sand and gravel, magnetite boulders, gypsum and intrusive fragments. Hematite is the second ubiquitous mineral after magnetite. Although some primary hematite is also found in the drill cores, most of hematite is secondary in origin. Some goethite and hydrous iron oxide occur on the surface, but disappear rapidly with increasing depth. Calcite, dolomite, secondary hematite and talc occur throughout the orebody as veinlets and cementing material of oxidized ore. Rutile and goethite are probably the results of total transformation of the earlier formed martite [<xref ref-type="bibr" rid="scirp.69052-ref18">18</xref>] .</p><p>In the Early Cambrian there are intrusions of granitic plutons into the Precambrian sequence and formation of felsic to intermediate volcanic and volcano-sedimentary rocks. This sequence is composed of an unmetamorphosed series which includes interlayered micro-conglomerates, sandstones, black siltstones and shales, dolomites and dolomitic limestones, mafic to felsic volcanic rocks, volcanoclastic beds and tuffaceous shales [<xref ref-type="bibr" rid="scirp.69052-ref19">19</xref>] - [<xref ref-type="bibr" rid="scirp.69052-ref21">21</xref>] . Simplified geological map of Choghart pit, based on different rock types as well as the location of samples within the study area are shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>.</p><p>Choghart main minerals include magnetite, hematite (Martite), actinolite, tremolite and sometimes pyrite and albite. Apatite-bearing magnetite is formed often in margins of deposit [<xref ref-type="bibr" rid="scirp.69052-ref22">22</xref>] . <xref ref-type="fig" rid="fig3">Figure 3</xref> illustrates some examples of optical microscopy investigations for three samples from three different rock types consisting host rock, Iron ore body and metasomatite.</p><p>The Early Cambrian igneous rocks of the Bafqmining district have a bimodal nature. The chondrite-norma- lized REE patterns display significant variation from LREE to HREE with no considerable Eu anomalies for basaltic rocks. And show obvious enrichment in the LREE with important negative Eu anomalies for the rhyolitic domes [<xref ref-type="bibr" rid="scirp.69052-ref23">23</xref>] . The REEs enrichment is intensely associated with the formation of phosphate minerals in many IOA deposits. However, sometimes bastnaesite and allanite are significant [<xref ref-type="bibr" rid="scirp.69052-ref24">24</xref>] . In this study, apatite is the main REE bearing mineral in Choghart Iron ore deposit. <xref ref-type="fig" rid="fig4">Figure 4</xref> shows some examples of apatite which have been observed in this deposit.</p><p>Edfelt (2007) explained there are few complications in the phosphate-REE relationship in some Kiruna district [<xref ref-type="bibr" rid="scirp.69052-ref25">25</xref>] . Hence, the relationship between REE and phosphate minerals in such deposits should be more</p><fig id="fig2"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref></label><caption><title> Simplified geological map of Choghart pit and sample locations (red frame shows study area) (simplified and modified after Dehghan (2011), [<xref ref-type="bibr" rid="scirp.69052-ref37">37</xref>] )</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x8.png"/></fig><fig id="fig3"  position="float"><label><xref ref-type="fig" rid="fig3">Figure 3</xref></label><caption><title> Microscopic images: (a) Host rock sample, consisting of plagioclase and calcite with fine grain background texture of quartz and sericite, porphyry texture, thin section, XPL; (b) Iron ore sample, magnetite, apatite with some martitized magnetite, polished section; (c) Metasomatite sample, microgranoular texture, pyroxene (red), apatite (gray), magnetite and hematite, thin section, XPL</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x9.png"/></fig><fig-group id="fig4"><label><xref ref-type="fig" rid="fig4">Figure 4</xref></label><caption><title> Apatite samples of Choghart deposit.</title></caption><fig id ="fig4_1"><label></label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x11.png"/></fig><fig id ="fig4_2"><label></label><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x10.png"/></fig></fig-group><p>understood. In these deposits, appetites characteristically comprise 2000 - 6000 ppm REE [<xref ref-type="bibr" rid="scirp.69052-ref26">26</xref>] [<xref ref-type="bibr" rid="scirp.69052-ref27">27</xref>] . Daliran (2002) claimed Bafq district apatites contain up to 1.75 wt.% REE [<xref ref-type="bibr" rid="scirp.69052-ref28">28</xref>] . Some researches present that post-de- positional REE leaching could be happened in apatite in which the inclusions of monazite and xenotime might be seen [<xref ref-type="bibr" rid="scirp.69052-ref29">29</xref>] - [<xref ref-type="bibr" rid="scirp.69052-ref31">31</xref>] . The U-Pb dating of monazite inclusions in apatite demonstrates that the REE redistribution in apatite might be happened frequently throughout hydrothermal process several million years after the formation of the IOA deposits [<xref ref-type="bibr" rid="scirp.69052-ref30">30</xref>] .</p></sec><sec id="s3"><title>3. Data Set</title><p>The data set is a collection of 112 lithology samples that were assayed with laboratory tests. 19 features including coordinates x, y, z and concentrations of Phosphate (P<sub>2</sub>O<sub>5</sub>) and REEs (<xref ref-type="table" rid="table1">Table 1</xref>), were selected as input data set. The concentrations of REEs were analyzed in laboratory using inductively coupled plasma mass spectrometry (ICP-MS) due to its sensitivity for trace elements. Phosphate (P<sub>2</sub>O<sub>5</sub>) contents were measured by X-ray fluorescence (XRF) spectrometer. Phosphate is in percent and other elements are in ppm. It should be noted that these values have been normalize in order to use them in clustering methods.</p><p>According to the results of the ICP-MS analysis, cerium, lanthanum, neodymium and yttrium have the maximum amounts among all the rare earth elements in Choghart. These elements are in relationship with apatite. Therefore, the distribution of phosphorus in this region is associated with the distribution of rare earth elements. Since the apatite is the main source of these elements in study area, Phosphate was chosen as an input variable.</p><p>The geological settings in addition to information of field studies and microscopic investigations that mentioned in Section ‎2, were applied for validity assessment of SOM output map.</p></sec><sec id="s4"><title>4. Methodology</title><p>Self-organizing maps (SOM) is a type of artificial neural network (ANN), which is applied for clustering as an</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Rare earth elements and phosphate which have been used as well as average and minimum and maximum of each element. Phosphate (P<sub>2</sub>O<sub>5</sub>) is in percent and other elements are in ppm</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Element (ppm)</th><th align="center" valign="middle" >La</th><th align="center" valign="middle" >Ce</th><th align="center" valign="middle" >Pr</th><th align="center" valign="middle" >Nd</th><th align="center" valign="middle" >Sm</th><th align="center" valign="middle" >Eu</th><th align="center" valign="middle" >Gd</th><th align="center" valign="middle" >Tb</th><th align="center" valign="middle" >Dy</th><th align="center" valign="middle" >Ho</th><th align="center" valign="middle" >Er</th><th align="center" valign="middle" >Tm</th><th align="center" valign="middle" >Yb</th><th align="center" valign="middle" >Lu</th><th align="center" valign="middle" >Y</th><th align="center" valign="middle" >%P<sub>2</sub>O<sub>5</sub></th></tr></thead><tr><td align="center" valign="middle" >Average</td><td align="center" valign="middle" >329</td><td align="center" valign="middle" >532</td><td align="center" valign="middle" >47</td><td align="center" valign="middle" >217</td><td align="center" valign="middle" >41</td><td align="center" valign="middle" >84</td><td align="center" valign="middle" >108</td><td align="center" valign="middle" >26</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >13</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >13</td><td align="center" valign="middle" >5</td><td align="center" valign="middle" >1245</td><td align="center" valign="middle" >5</td></tr><tr><td align="center" valign="middle" >Maximum</td><td align="center" valign="middle" >2728</td><td align="center" valign="middle" >5291</td><td align="center" valign="middle" >477</td><td align="center" valign="middle" >1972</td><td align="center" valign="middle" >432</td><td align="center" valign="middle" >3050</td><td align="center" valign="middle" >484</td><td align="center" valign="middle" >574</td><td align="center" valign="middle" >262</td><td align="center" valign="middle" >141</td><td align="center" valign="middle" >94</td><td align="center" valign="middle" >89</td><td align="center" valign="middle" >183</td><td align="center" valign="middle" >245</td><td align="center" valign="middle" >6592</td><td align="center" valign="middle" >46</td></tr><tr><td align="center" valign="middle" >Minimum</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >3</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >0</td></tr></tbody></table></table-wrap><p>unsupervised method. This method was first developed by Kohonen in 1980 and its typical application is to produce a two-dimensional map from a multidimensional space [<xref ref-type="bibr" rid="scirp.69052-ref32">32</xref>] . This method uses a network to estimate the probability density function of the input space, in a way that maintains the topological structure of the input space. If two vectors in the input space are close together, they would be considered under a same condition. The net of neurons is a right-angle grid and the neighbors repeatedly upgrade. <xref ref-type="fig" rid="fig5">Figure 5</xref> shows physical scheme of self-organizing map.</p><p>In this method, first, random amounts of weight, w<sub>kj</sub>, are considered for the neurons. So:</p><disp-formula id="scirp.69052-formula554"><label>(1)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/3-1210551x12.png"  xlink:type="simple"/></disp-formula><p>where K is the number of rows and J is the column. Then a random vector of input data is selected. The next step is calculation of distances between this vector and neurons and finding the closest as wining neuron (Equation (2)). Then, winning neurons and neighboring neurons converge to the input vector. For this purpose, the neighborhood function is defined according to Equation (3) [<xref ref-type="bibr" rid="scirp.69052-ref33">33</xref>] .</p><disp-formula id="scirp.69052-formula555"><label>(2)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/3-1210551x13.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.69052-formula556"><label>(3)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/3-1210551x14.png"  xlink:type="simple"/></disp-formula><p>Rectangular or hexagonal neighborhood can be defined. However, the Gaussian kernel is commonly used as follows [<xref ref-type="bibr" rid="scirp.69052-ref33">33</xref>] :</p><disp-formula id="scirp.69052-formula557"><label>(4)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/3-1210551x15.png"  xlink:type="simple"/></disp-formula><p>where η(t) is the learning rate factor and σ(t) is the width of the kernel. Both η(t) and σ(t) are monotonically decreasing functions. To determine the accuracy of the map, error is calculated as Equation (4) and iteration stops when this error is small enough.</p><disp-formula id="scirp.69052-formula558"><label>(5)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/3-1210551x16.png"  xlink:type="simple"/></disp-formula><p>To determine the cluster boundaries, unified distance matrix (U-matrix), might be calculated. The U-matrix expresses the distance to the neighboring vectors for each neuron. Large values within the U-matrix indicate the position of cluster boundaries [<xref ref-type="bibr" rid="scirp.69052-ref33">33</xref>] .</p></sec><sec id="s5"><title>5. Results and Discussion</title><p>Optimum number of clusters was determined with silhouette criterion. In this way, a graphical validation was applied for evaluation of cluster number and comparison of the different scenarios. This method is based on calculating the distances between cluster members and distances between the clusters prototype [<xref ref-type="bibr" rid="scirp.69052-ref34">34</xref>] . The silhouette value for each point shows the similarity of that point with others in its own cluster in comparison to points in other clusters [<xref ref-type="bibr" rid="scirp.69052-ref35">35</xref>] . Therefore, the number of clusters was changed in the range of 2 - 10 and known K- means algorithm and also SOM was applied for clustering and results evaluated using silhouette criterion. Finally, 4 clusters were decided as the optimal number. In this case the best results of silhouette values were attained (<xref ref-type="fig" rid="fig6">Figure 6</xref>). Positive values shows that samples are clustered appropriate and the width of each sample is</p><fig id="fig5"  position="float"><label><xref ref-type="fig" rid="fig5">Figure 5</xref></label><caption><title> Physical structure of self-organizing map [<xref ref-type="bibr" rid="scirp.69052-ref33">33</xref>] </title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x17.png"/></fig><fig id="fig6"  position="float"><label><xref ref-type="fig" rid="fig6">Figure 6</xref></label><caption><title> Silhouette plot and overall average silhouette width: k-means clustering (left) and self-organizing map (right)</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x18.png"/></fig><p>an expression of confidence. However, for 12 samples the silhouette values are negative and illustrate that they have been incorrectly clustered. Since, the logic of both k-means and SOM method is the same, they put the samples in the same clusters. Accordingly, silhouette results of both methods are similar.</p><p>The goal of SOM is to represent all input vectors in a high-dimensional space by prototypes in a low-dimen- sional space, such that the distance and topology are preserved as much as possible [<xref ref-type="bibr" rid="scirp.69052-ref36">36</xref>] . Therefore, in this study, the high-dimensional dataset (19 dimensions that are 19 features including coordinates x, y, z and concentrations of Phosphate (P<sub>2</sub>O<sub>5</sub>) and REEs) has been evaluated in a two-dimensional space. Schematic diagram of the structure of self-organizing map in this study is shown in <xref ref-type="fig" rid="fig7">Figure 7</xref>. Using self-organizing map, the samples of studied area can be assigned to four clusters, as shown in <xref ref-type="fig" rid="fig8">Figure 8</xref>. In this way, 13, 32, 38 and 29 samples respectively were clustered in zones 1 to 4. Each hexagon represents a neuron. In this study, a 2 &#215; 2 network has been used which is composed of four neurons.</p><p>Average contents of REEs and phosphate (P<sub>2</sub>O<sub>5</sub>) for samples located in each zone have been calculated and presented in <xref ref-type="table" rid="table2">Table 2</xref>. Comparing the results with laboratory and field studies, these four zones can be described and summarized as follow:</p><fig id="fig7"  position="float"><label><xref ref-type="fig" rid="fig7">Figure 7</xref></label><caption><title> Schematic diagram of the structure of self-organizing map in this study</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x19.png"/></fig><fig id="fig8"  position="float"><label><xref ref-type="fig" rid="fig8">Figure 8</xref></label><caption><title> Determining the number of samples for each cluster</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x20.png"/></fig><table-wrap id="table2" ><label><xref ref-type="table" rid="table2">Table 2</xref></label><caption><title> Average concentrations of rare earth elements for samples in different zones which separated using self-organizing map algorithm</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >REE (ppm) Zone</th><th align="center" valign="middle" >La</th><th align="center" valign="middle" >Ce</th><th align="center" valign="middle" >Pr</th><th align="center" valign="middle" >Nd</th><th align="center" valign="middle" >Sm</th><th align="center" valign="middle" >Eu</th><th align="center" valign="middle" >Gd</th><th align="center" valign="middle" >Tb</th><th align="center" valign="middle" >Dy</th><th align="center" valign="middle" >Ho</th><th align="center" valign="middle" >Er</th><th align="center" valign="middle" >Tm</th><th align="center" valign="middle" >Yb</th><th align="center" valign="middle" >Lu</th><th align="center" valign="middle" >Y</th><th align="center" valign="middle" >P<sub>2</sub>O<sub>5</sub> (%)</th></tr></thead><tr><td align="center" valign="middle" >1</td><td align="center" valign="middle" >1658</td><td align="center" valign="middle" >2632</td><td align="center" valign="middle" >194</td><td align="center" valign="middle" >1077</td><td align="center" valign="middle" >149</td><td align="center" valign="middle" >616</td><td align="center" valign="middle" >193</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >68</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >21</td><td align="center" valign="middle" >22</td><td align="center" valign="middle" >1</td><td align="center" valign="middle" >3132</td><td align="center" valign="middle" >31</td></tr><tr><td align="center" valign="middle" >2</td><td align="center" valign="middle" >40</td><td align="center" valign="middle" >129</td><td align="center" valign="middle" >15</td><td align="center" valign="middle" >47</td><td align="center" valign="middle" >25</td><td align="center" valign="middle" >18</td><td align="center" valign="middle" >118</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >12</td><td align="center" valign="middle" >3</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >5</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >12</td><td align="center" valign="middle" >1367</td><td align="center" valign="middle" >0.2</td></tr><tr><td align="center" valign="middle" >3</td><td align="center" valign="middle" >305</td><td align="center" valign="middle" >360</td><td align="center" valign="middle" >45</td><td align="center" valign="middle" >166</td><td align="center" valign="middle" >27</td><td align="center" valign="middle" >11</td><td align="center" valign="middle" >76</td><td align="center" valign="middle" >56</td><td align="center" valign="middle" >13</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >11</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >10</td><td align="center" valign="middle" >2</td><td align="center" valign="middle" >767</td><td align="center" valign="middle" >3</td></tr><tr><td align="center" valign="middle" >4</td><td align="center" valign="middle" >84</td><td align="center" valign="middle" >260</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >84</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >15</td><td align="center" valign="middle" >99</td><td align="center" valign="middle" >15</td><td align="center" valign="middle" >15</td><td align="center" valign="middle" >14</td><td align="center" valign="middle" >25</td><td align="center" valign="middle" >5</td><td align="center" valign="middle" >18</td><td align="center" valign="middle" >3</td><td align="center" valign="middle" >891</td><td align="center" valign="middle" >1</td></tr></tbody></table></table-wrap><p>・ Zone 1: phosphate type</p><p>This zone is mainly composed of samples with high contents of phosphorous in the form of apatite. The average of phosphate in this zone is 31%. This type is directly related to rare earth elements and containing the maximum amount of rare earth elements with average of 652 ppm of REEs.</p><p>・ Zone 2: albitofyre type</p><p>The concentrations of phosphate and REEs are minimum in this zone. They are 0.2% and 121 ppm for phosphate and REEs, respectively.</p><p>・ Zone 3: metasomatic and phosphorus iron ore</p><p>The samples of this zone are mostly iron ore which are affected by Metasomatism. Moreover, the contents of phosphate and apatite as well as rare earth elements are relatively high. The concentrations of phosphate and REEs are 3% and 124 ppm, respectively.</p><p>・ Zone 4: iron ore type</p><p>This zone consists of Iron ore. The concentrations of phosphate and REEs are 1% and 105 ppm, respectively.</p><p>Since Self-organizing map has a 2-dimensional topology, the relations between centers of 19-dimensional clusters have been illustrated in a 2-dimensional map. Weight distance matrix or unified distance matrix (U-matrix) is one of the tools of SOM. <xref ref-type="fig" rid="fig9">Figure 9</xref> shows neighbor weight distances. Lines are used to display the relationship between neighbor neurons. The darker the color, the further the distance between the neurons, as well as the lighter the color, the lesser the distance between the neurons. Therefore, the distance between zone 1 and zone 2 is maximum. They are the most prone and least prone zones for rare earth elements, respectively. The minimum distance is related to Zone 2 and 4. They both have the least contents of REEs. Finally, zone 1 (phosphate type) is the most promising zone for rare earth elements.</p><p><xref ref-type="fig" rid="fig1">Figure 1</xref>0 shows the location of samples. For better visual separation, samples of each zone have been shown with distinct colors. Thus, a distinction between zones (or clusters) could be seen based on the coordinates.</p></sec><sec id="s6"><title>6. Conclusion</title><p>Usual ways of clustering which have been used in geochemical explorations, according to literature reviews, were around K-means algorithm. However, in this way and other popular methods such as MLP neural network, topology of samples is not to be considered. Self-organizing map or briefly SOM is a type of artificial neural network (ANN), which is applied for clustering and its advantages, is to involve topological settings of dataset and gives a two-dimensional map from a multidimensional input dataset. This method has been used already in some fields of Earth Sciences such as geophysics and seismology. In this study, known SOM was applied to find REEs’ distribution in Choghart Iron ore deposit. Accordingly, after finding optimal number of clusters using silhouette criterion, a two-dimensional map was composed. Finally, studied area was subdivided in four zones</p><fig id="fig9"  position="float"><label><xref ref-type="fig" rid="fig9">Figure 9</xref></label><caption><title> SOM neighbor weight distances</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x21.png"/></fig><fig id="fig10"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>0</label><caption><title> The result of SOM. The studied area has been divided to 4 zones</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/3-1210551x22.png"/></fig><p>which have a good agreement with rock types. Field studies and laboratory analysis confirm that there are four different rock types. Given that just REEs and phosphate (not all elements) have been used for clustering, it can be concluded that this algorithm has worked well. In addition, this study shows that the preservation of topology is one of the advantages of this method for geochemical exploration. The comparison between the results and laboratory analysis as well as checking with field observations, confirm authenticity of this study.</p></sec><sec id="s7"><title>Cite this paper</title><p>Mohammadali Sarparandeh,Ardeshir Hezarkhani, (2016) Application of Self-Organizing Map for Exploration of REEs’ Deposition. Open Journal of Geology,06,571-582. doi: 10.4236/ojg.2016.67045</p></sec><sec id="s8"><title>NOTES</title></sec></body><back><ref-list><title>References</title><ref id="scirp.69052-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Hao, Y. and Wang, G. (2012) Application of Fractal Models to Characterization of Vertical Distribution of Mo Deposits in Henan Province. 8th International Conference on Natural Computation, Chongqing, 29-31 May 2012, 927-931. 
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