<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">OJMM</journal-id><journal-title-group><journal-title>Open Journal of Medical Microbiology</journal-title></journal-title-group><issn pub-type="epub">2165-3372</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ojmm.2015.52012</article-id><article-id pub-id-type="publisher-id">OJMM-57582</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Medicine&amp;Healthcare</subject></subj-group></article-categories><title-group><article-title>
 
 
  Assessment of Predictors for Early Resistance to Hepatitis C Virus Treatment
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>oha</surname><given-names>El- Mashad</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Hekmat</surname><given-names>El Tantawy</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Eman</surname><given-names>Elsayed</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Sherein</surname><given-names>Rkha</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Maha</surname><given-names>Maher</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mohammed</surname><given-names>Shokhba</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib></contrib-group><aff id="aff2"><addr-line>Department of Zoology, Faculty of Science, Suez Canal University, Ismailia, Egypt</addr-line></aff><aff id="aff3"><addr-line>Department of Internal Medicine, Specialized Medical Hospital, Faculty of Medicine, Mansoura University, Mansoura, Egypt</addr-line></aff><aff id="aff1"><addr-line>Department of Clinical Pathology, Faculty of Medicine, Mansoura University, Mansoura, Egypt</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>renadodi@yahoo.com(EE)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>02</day><month>06</month><year>2015</year></pub-date><volume>05</volume><issue>02</issue><fpage>97</fpage><lpage>105</lpage><history><date date-type="received"><day>4</day>	<month>March</month>	<year>2015</year></date><date date-type="rev-recd"><day>accepted</day>	<month>27</month>	<year>June</year>	</date><date date-type="accepted"><day>30</day>	<month>June</month>	<year>2015</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  The current standard of treatment for HCV is the combination of pegylated interferon (PEG-IFN) and ribavirin (RBV). Response to therapy is influenced by different factors related to virus or host characteristics. In this study we detected HCV genotype in some patients with chronic HCV infection—who received interferon plus ribavirin therapy and evaluating some risk factors in early resistance to treatment. These risk factors included age, gender, ALT&amp; AST levels, HCV viral load &amp; genotype. This study included 60 patients with chronic HCV infection and subjected to PEG-INF plus RBV therapy. 40 (gp I) had developed resistance after 12 weeks; while group II are the responders. on comparing patients in group I n = 40 (who developed resistance) to patients in group 2, no = 20 (responders), it has been found that the most important risk factors for developing resistance are the increased viral load of HCV-RNA, and AST.HCV-genotype as a risk factor was significantly higher among cases with genotype 1 and 4 and P value was 0.004. This was followed by ALT and AFP as risk factors with P value 0.004 for each and age with P value 0.026. However, regarding sex of the patients there was no significant difference between group I and II. In conclusion: the most frequent HCV genotype in resistant group were genotype I and IV, while in responder patient were genotype 2 &amp; 3. The most important risk factor in this study is viral load and HCV genotype.
 
</p></abstract><kwd-group><kwd>HCV</kwd><kwd> Ribavirin</kwd><kwd> Pegylated Interferon</kwd><kwd> Resistance</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>The primary goal of treatment is to eradicate (that is/cure) HCV infection [<xref ref-type="bibr" rid="scirp.57582-ref1">1</xref>] . But therapy can also decrease hepatic inflammation and fibrosis, slow disease progression and reduce the risks for cirrhosis and hepatocellular carcinoma even in absence of cure [<xref ref-type="bibr" rid="scirp.57582-ref2">2</xref>] .</p><p>The current standard of treatment is the combination of pegylated interferon (PEG-IFN) and ribavirin (RBV) [<xref ref-type="bibr" rid="scirp.57582-ref3">3</xref>] . The efficacy endpoint of hepatitis C treatment is the “sustained virological response” (SVR), which is defined by the absence of detectable HCV RNA in serum as assessed by an HCV RNA assay with a lower limit of detection of 50 IU/ML or less, 24 wk after the end of treatment [<xref ref-type="bibr" rid="scirp.57582-ref4">4</xref>] .</p><p>There are patients who do not achieve a SVR due to unresponsiveness or relapse after treatment, as well as those who lake tolerance to adverse events that occur during treatment. Therefore, the shorter treatment duration is, the more convenient routes of administration and favorable side-effect profiles are [<xref ref-type="bibr" rid="scirp.57582-ref5">5</xref>] .</p><p>Response to therapy is influenced by different factors related to virus or host characteristics [<xref ref-type="bibr" rid="scirp.57582-ref6">6</xref>] .</p><p>So, our aim in this work is to detect HCV genotype in some patients with chronic HCV infection―who receive interferon plus ribavirin therapy and evaluate predictors of early resistance to treatment.</p></sec><sec id="s2"><title>2. Patients and Methods</title><p>60 patients were selected for this study infected with HCV and investigated to the treatment of PEG-interferon plus ribavirin. HCV-RNA detected by quantitative real time PCR was performed routinely before treatment and 12 weeks after starting treatment course.</p><sec id="s2_1"><title>2.1. Patients Were Divided into 2 Groups</title><p>First group: included 40 patients who are non responders to PEG-IFN plus RBV for 12 weeks. Quantitative PCR testing had been performed and proved to be positive.</p><p>Second group: is the responders group which included 20 patients who have responded to PEG-IFN plus RBV therapy. Quantitative PCR proved to be negative, six months after completion of treatment course.</p><p>All samples were collected after obtaining formal consent from the patients.</p></sec><sec id="s2_2"><title>2.2. Sample Collection</title><p>5 ml of venous blood was collected from each case under complete aseptic technique and divided into serum and whole blood on EDTA(for platelet count).Serum samples used for HCV genotyping were stored at −20˚C.</p></sec><sec id="s2_3"><title>2.3. Laboratory Procedures</title><p>Biochemical investigation included ALT and AST levels were determined using automatic autoanalyser, Cobas Amplicor System.</p><p>Hematological investigations. Hemoglobin (Hb) measurement and platelets count of the studied samples were performed by automatic system (sysmex).</p><p>Determination of degree of fibrosis (F) and degree of activity (A) for a liver biopsy. The activity (A) of the disease which was classified into A0, A1, A2 and A3while degree of fibrosis (F) was classified to F0, F1, F2, F3 and F4 according to the METAVIR classification system [<xref ref-type="bibr" rid="scirp.57582-ref7">7</xref>] [<xref ref-type="bibr" rid="scirp.57582-ref8">8</xref>] .</p><p>Hepatic activity score (A)</p><p>・ A0 = no activity (no or minimal inflammation).</p><p>・ A1 = mild activity.</p><p>・ A2 = moderate activity.</p><p>・ A3 = severe activity.</p><p>Hepatic fibrosis score (F)</p><p>・ F0 = no fibrosis (normal liver).</p><p>・ F1 = mild fibrosis (portal fibrosis).</p><p>・ F2 = moderate fibrosis (few septa).</p><p>・ F3 = severe fibrosis (numerous septa).</p><p>・ F4 = cirrhosis.</p><p>HCV genotyping (this includes viral RNA extraction, RNA purification and cDNA synthesis and amplification).</p><p>Viral RNA extraction and purification from the serum samples of patients using a commercial specific kit, Qiaamp viral RNA kit, (QIAGEN GmbH, Germany (www.qiagen.com).</p><p>Viral RNA is suspended in 60 ul of buffer AVE equilibrated at room temperature.</p><p>cDNA synthesis and amplification: were performed according to manufacturer instructions using commercial Verso 1-Step QRT-PCR ROX KitProvided byThermo FisherScientific (ABgene). ABgene UK. Abgene.techsupport@thermofisher.com. (www.abgene.com).</p><p>The sequence of external and internal PCR primers: Specific for 5'-UTR region of HCV genome [<xref ref-type="bibr" rid="scirp.57582-ref9">9</xref>] were as follow:</p><p>ExF; 5'-AGCGTCTAGCCATGGCGT-3'</p><p>ExR; 5'-GCACGGTCTACGAGACCT-3'</p><p>InF; 5'-GTGTCTGCGGAACCGG-3'</p><p>InR; 5'-GGGCACTCGCAAGCACCC-3'</p><p>-The volume of each component in the reaction mix</p><p>-QRT-PCR thermal cycling program consist of</p><p>Nested-PCR intended to reduce the contamination in products. This involves two sets of primers, used in two successive runs of polymerase chain reaction, the second set intended to amplify a secondary target within the first run product [<xref ref-type="bibr" rid="scirp.57582-ref9">9</xref>] .</p><p>3 &#181;l of the first round PCR product was used as template and 0.5 &#181;l of each diluted (1:10) internal primer was added to the reaction. Other PCR components were similar to the first round as follow:</p><p>-The volume of each component in the reaction mix</p><p>Apart from annealing temperature which was 64˚C for 40 seconds, other steps of nested-PCR program were similar to the first round.</p></sec><sec id="s2_4"><title>2.4. RFLP Performed for HCV Required</title><p>I―Two pairs of restriction enzymes, Hinf I/ScrF I, Hinf I/MvaI and Bsh1236 I, were used and provided by Fermentas life sciences, (www.fermentas.com).</p><p>1―HinfI</p><p>-Cuts at 5'…G↓A T C…3'</p><p>3'…C T A↑G…5'</p><p>2―ScrFI</p><p>-Cuts at 5'…C C↓ G G…3'</p><p>3'…G G ↑C C…5'</p><p>3―MvaI</p><p>-Cuts at 5'…C C↓ G G…3'</p><p>3'…G G ↑C C…5'</p><p>4―Bsh1236I</p><p>-Cuts at 5'…C G↓C G…3'</p><p>3'…G C↑G C…5'</p><p>II―1 ml of 10X Fast Digest Buffer: are an advanced line of restriction enzymes for rapid DNA digestion within 5 - 15 minutes.</p><p>Pohjanpelto et al. [<xref ref-type="bibr" rid="scirp.57582-ref9">9</xref>] divided each nested-PCR products into 3 - 1.5 ml microtubes and the restriction enzymes were added to the assigned tube as follow:</p><p>・ Protocol for Fast Digestion of PCR product</p><p>Sample loading. In each of the three Microtubes (representing one sample) containing DNA &amp; restriction enzymes, 3.0 μl of loading dye was added and Running them on 2% agrose gel: The wells in the gel was loaded with 10.0 μl of 50 bp ladder DNA as well as 10.0 μl of the restriction digest from each Microtube (each microtube represented by a well).</p></sec><sec id="s2_5"><title>2.5. Determination of HCV Genotypes</title><p>The HCV genotypes were determined in all patients based on PCR-RFLP method. <xref ref-type="table" rid="table1">Table 1</xref> shows RFLP pattern of HCV genotypes after digestion of PCR products with restriction enzymes [<xref ref-type="bibr" rid="scirp.57582-ref9">9</xref>] .</p></sec></sec><sec id="s3"><title>3. Results</title><p><xref ref-type="table" rid="table2">Table 2</xref> shows age and gender distribution among studied groups. Non responders groups (group I) were 4 (10%) patients below 40 years and 36 (90%) above 40 years, while group II was represented by 10 (50%) patients below 40 years and 10 (50%) patients above 40 years. According to sex, non responders group were 28 (70%) males and 12 (30%) females, while group II was represented by (70%) males and (30%) females.</p><p><xref ref-type="table" rid="table3">Table 3</xref> shows the comparison between laboratory tests profiles in group I (n = 40) before and after treatment.</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> RFLP pattern of HCV genotyoes after digestion of PCR products with restriction enzymes</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="2"  >HCV Genotypes</th><th align="center" valign="middle"  colspan="3"  >Size of Fragments</th></tr></thead><tr><td align="center" valign="middle" >Tube A (ScrF I and Hinf I)</td><td align="center" valign="middle" >Tube B (Mva I and Hinf I)</td><td align="center" valign="middle" >Tube C (Bsh1236 I)</td></tr><tr><td align="center" valign="middle" >1a</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >129 bp</td></tr><tr><td align="center" valign="middle" >1b</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >99 bp</td></tr><tr><td align="center" valign="middle" >2a</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >174 bp</td><td align="center" valign="middle" >174 bp</td></tr><tr><td align="center" valign="middle" >2b</td><td align="center" valign="middle" >174 bp</td><td align="center" valign="middle" >174 bp</td><td align="center" valign="middle" >174 bp</td></tr><tr><td align="center" valign="middle" >3a</td><td align="center" valign="middle" >129 bp</td><td align="center" valign="middle" >145 bp</td><td align="center" valign="middle" >99 bp</td></tr><tr><td align="center" valign="middle" >3b</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >145 bp</td><td align="center" valign="middle" >99 bp</td></tr><tr><td align="center" valign="middle" >4</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >145 bp</td><td align="center" valign="middle" >129 bp</td></tr><tr><td align="center" valign="middle" >5</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >174 bp</td><td align="center" valign="middle" >99 bp</td></tr><tr><td align="center" valign="middle" >6</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >97 bp</td><td align="center" valign="middle" >174 bp</td></tr></tbody></table></table-wrap><table-wrap id="table2" ><label><xref ref-type="table" rid="table2">Table 2</xref></label><caption><title> Age and gender distribution among studied groups</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  colspan="3"  ></th><th align="center" valign="middle" >Group I (n = 40)</th><th align="center" valign="middle" >Group II (n = 20)</th></tr></thead><tr><td align="center" valign="middle"  rowspan="4"  >Age</td><td align="center" valign="middle"  rowspan="2"  >40&gt;</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >10</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >10</td><td align="center" valign="middle" >50</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >&gt;40</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >36</td><td align="center" valign="middle" >10</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >90</td><td align="center" valign="middle" >50</td></tr><tr><td align="center" valign="middle"  rowspan="4"  >Gender</td><td align="center" valign="middle"  rowspan="2"  >Male</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >28</td><td align="center" valign="middle" >14</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >70</td><td align="center" valign="middle" >70</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >Female</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >12</td><td align="center" valign="middle" >6</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >30</td></tr></tbody></table></table-wrap><table-wrap id="table3" ><label><xref ref-type="table" rid="table3">Table 3</xref></label><caption><title> Comparison between laboratory tests profiles in group I (n = 20) before and after treatment of chronic HCV infection</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  colspan="6"  >Group I (n = 40)</th></tr></thead><tr><td align="center" valign="middle"  rowspan="2"  >P Value</td><td align="center" valign="middle"  rowspan="2"  >T Value</td><td align="center" valign="middle" >Mean Change</td><td align="center" valign="middle" >After Treatment</td><td align="center" valign="middle" >Before Treatment</td><td align="center" valign="middle"  rowspan="2"  >Parameters</td></tr><tr><td align="center" valign="middle" >Mean &#177; SD</td><td align="center" valign="middle" >Mean &#177; SD</td><td align="center" valign="middle" >Mean &#177; SD</td></tr><tr><td align="center" valign="middle" >0.000</td><td align="center" valign="middle" >4.37</td><td align="center" valign="middle" >1,957,459 &#177; 2,001,836</td><td align="center" valign="middle" >683,174 &#177; 105,9010</td><td align="center" valign="middle" >2,640,634 &#177; 2,354,683</td><td align="center" valign="middle" >PCR</td></tr><tr><td align="center" valign="middle" >0.000</td><td align="center" valign="middle" >−10.27</td><td align="center" valign="middle" >−15.35 &#177; 6.68</td><td align="center" valign="middle" >79.95 &#177; 11.38</td><td align="center" valign="middle" >64.60 &#177; 11.53</td><td align="center" valign="middle" >ALT</td></tr><tr><td align="center" valign="middle" >0.000</td><td align="center" valign="middle" >−11.28</td><td align="center" valign="middle" >−16.10 &#177; 6.38</td><td align="center" valign="middle" >89.85 &#177; 12.69</td><td align="center" valign="middle" >73.75 &#177; 12.80</td><td align="center" valign="middle" >AST</td></tr><tr><td align="center" valign="middle" >0.000</td><td align="center" valign="middle" >−10.69</td><td align="center" valign="middle" >61,795 &#177; 25,839</td><td align="center" valign="middle" >120,105 &#177; 45,030</td><td align="center" valign="middle" >181,900 &#177; 52,934</td><td align="center" valign="middle" >Platelets</td></tr></tbody></table></table-wrap><p>PCR and Platelets were significantly decreased after treatment and P value was 0.000 for each, while ALT and AST were highly significantly increased with P value 0.000 for each.</p><p><xref ref-type="table" rid="table4">Table 4</xref> shows frequency of HCV genotypes in studied groups. Genotype 4 was represented by 28/40 (70%) cases in group I, and 4/20 (20%) cases in group 2 (responders). This was followed by genotype 3b represented</p><table-wrap id="table4" ><label><xref ref-type="table" rid="table4">Table 4</xref></label><caption><title> Frequency of HCV genotypes in studied groups</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  colspan="3"  >HCV Genotypes</th><th align="center" valign="middle" >Group I (n = 40)</th><th align="center" valign="middle" >Group IV (n = 20) Responders</th></tr></thead><tr><td align="center" valign="middle"  rowspan="4"  >Genotype 1</td><td align="center" valign="middle"  rowspan="2"  >1a</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >2</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >5</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >1b</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle"  rowspan="4"  >Genotype 2</td><td align="center" valign="middle"  rowspan="2"  >2a</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >2</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >5</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >2b</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle"  rowspan="4"  >Genotype 3</td><td align="center" valign="middle"  rowspan="2"  >3a</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >2</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >10</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >3b</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >14</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >70</td></tr><tr><td align="center" valign="middle"  colspan="2"   rowspan="2"  >Genotype 4</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >28</td><td align="center" valign="middle" >4</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >70</td><td align="center" valign="middle" >20</td></tr><tr><td align="center" valign="middle"  colspan="2"   rowspan="2"  >Genotype 5</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle"  colspan="2"   rowspan="2"  >Genotype 6</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td></tr><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td></tr></tbody></table></table-wrap><p>by 8/40 (20%) cases in group I, and 14/20 (70%) cases in group 2 (responders). Genotype 3a that represented 2/20 (10%) case in group 2 (responders), Genotype 5 and 6 were not found in any of the studied groups.</p><p><xref ref-type="table" rid="table5">Table 5</xref>, on comparing patients in group In = 40 (who developed resistance) to patients in group 2, no = 20 (responders), it has been found that the most important risk factors for developing resistance are the increased viral load of HCV-RNA, AST, degree of fibrosis with P value 0.000 for each followed by degree of activity with P value 0.001.HCV-genotype as a risk factor was significantly higher among cases with genotype 1 and 4 and P value was 0.004. This was followed by ALT and AFP as risk factors with P value 0.004 for each and age with P value 0.026. However, regarding sex of the patients there was no significant difference between group I and II.</p></sec><sec id="s4"><title>4. Discussion</title><p>HCV is a principal cause of chronic liver diseases including liver fibrosis, cirrhosis and hepatocellular carcinoma [<xref ref-type="bibr" rid="scirp.57582-ref10">10</xref>] .</p><p>Viral genotypes and viral load are considered the most important predictors of response. The high replication rate of HCV is one of the factors that interfere with the probability of response [<xref ref-type="bibr" rid="scirp.57582-ref11">11</xref>] .</p><p>This study included 60 patients with chronic HCV infection and subjected to PEG-INF plus RBV therapy. 40 (gp I) had developed resistance after 12 weeks; they were 28 males and 12 females. Four of them (10%) were less than 40 years and 36 (90%) were more than 40 years.</p><p>The comparison between laboratory tests profiles in group I (n = 40) before and after treatment. PCR and platelets were significantly decreased after treatment and P value was 0.000 for each, while ALT and AST were highly significantly increased with P value 0.000 for each (<xref ref-type="table" rid="table3">Table 3</xref>).</p><p>In similar studies, Alsaran et al., [<xref ref-type="bibr" rid="scirp.57582-ref12">12</xref>] compared responders to resistant patients, the higher ALT and AST levels were observed in resistant patients. While Balan et al., [<xref ref-type="bibr" rid="scirp.57582-ref13">13</xref>] reported that, HCV-infected patients receiving PEG-IFN/RBV therapy complaining of reductions in Hb, platelets, and WBCs, possibly due to bone marrow suppression.</p><table-wrap id="table5" ><label><xref ref-type="table" rid="table5">Table 5</xref></label><caption><title> Risk factors for resistance in group I patients (n = 40) versus responders (n = 20) to IFN therapy plus RBV</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="2"  >P- Value</th><th align="center" valign="middle"  rowspan="2"  >Odds Ratio (OR) 95% Confidence Interval</th><th align="center" valign="middle"  colspan="2"  >Group II (n = 20) Responders</th><th align="center" valign="middle"  colspan="2"  >Group I (n = 40)</th><th align="center" valign="middle"  colspan="2"   rowspan="2"  >Risk Factors</th></tr></thead><tr><td align="center" valign="middle" >%</td><td align="center" valign="middle" >No</td><td align="center" valign="middle" >%</td><td align="center" valign="middle" >No</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >1.000</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >70</td><td align="center" valign="middle" >14</td><td align="center" valign="middle" >70</td><td align="center" valign="middle" >28</td><td align="center" valign="middle" >Male</td><td align="center" valign="middle"  rowspan="2"  >Gender</td></tr><tr><td align="center" valign="middle" >1.0 (0.191 - 5.241)</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >12</td><td align="center" valign="middle" >Female</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >0.026</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >50</td><td align="center" valign="middle" >10</td><td align="center" valign="middle" >10</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >&lt;40</td><td align="center" valign="middle"  rowspan="2"  >Age</td></tr><tr><td align="center" valign="middle" >9.0 (1.325 - 61.138)</td><td align="center" valign="middle" >50</td><td align="center" valign="middle" >10</td><td align="center" valign="middle" >90</td><td align="center" valign="middle" >36</td><td align="center" valign="middle" >&gt;40</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >0.000</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >100</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >15</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >&lt;600,000</td><td align="center" valign="middle"  rowspan="2"  >HCV-PCR</td></tr><tr><td align="center" valign="middle" >--</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >85</td><td align="center" valign="middle" >34</td><td align="center" valign="middle" >&gt;600,000</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >0.004</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >80</td><td align="center" valign="middle" >16</td><td align="center" valign="middle" >25</td><td align="center" valign="middle" >10</td><td align="center" valign="middle" >2<sub>(a&amp;b)</sub> + 3<sub>(a&amp;b)</sub></td><td align="center" valign="middle"  rowspan="2"  >HCV-Genotype</td></tr><tr><td align="center" valign="middle" >12.0 (1.89 - 76.83)</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >75</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >4 + 1<sub>(a&amp;b)</sub></td></tr><tr><td align="center" valign="middle"  rowspan="2"  >0.004</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >80</td><td align="center" valign="middle" >16</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >&lt;55</td><td align="center" valign="middle"  rowspan="2"  >ALT</td></tr><tr><td align="center" valign="middle" >16.0 (2.39 - 106.73)</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >4</td><td align="center" valign="middle" >80</td><td align="center" valign="middle" >32</td><td align="center" valign="middle" >&gt;55</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >0.000</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >70</td><td align="center" valign="middle" >14</td><td align="center" valign="middle" >5</td><td align="center" valign="middle" >2</td><td align="center" valign="middle" >&lt;55</td><td align="center" valign="middle"  rowspan="2"  >AST</td></tr><tr><td align="center" valign="middle" >44.33 (3.92 - 500.26)</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >95</td><td align="center" valign="middle" >38</td><td align="center" valign="middle" >&gt;55</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >0.001</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >100</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >35</td><td align="center" valign="middle" >14</td><td align="center" valign="middle" >1 + 2</td><td align="center" valign="middle"  rowspan="2"  >A</td></tr><tr><td align="center" valign="middle" >--</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >65</td><td align="center" valign="middle" >26</td><td align="center" valign="middle" >3</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >0.000</td><td align="center" valign="middle" >R</td><td align="center" valign="middle" >100</td><td align="center" valign="middle" >20</td><td align="center" valign="middle" >30</td><td align="center" valign="middle" >12</td><td align="center" valign="middle" >1 + 2</td><td align="center" valign="middle"  rowspan="2"  >F</td></tr><tr><td align="center" valign="middle" >--</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >0</td><td align="center" valign="middle" >70</td><td align="center" valign="middle" >28</td><td align="center" valign="middle" >3</td></tr></tbody></table></table-wrap><p>In this study, we performed HCV genotyping for studied patients in order to find a possible correlation between response to treatment and specific genotype. In addition, we tried to discuss the studied clinical and laboratory parameters as risk factors for response versus resistance to IFN therapy plus RBV (<xref ref-type="table" rid="table4">Table 4</xref> and <xref ref-type="table" rid="table5">Table 5</xref>).</p><p>Frequency of different HCV-genotypes is shown in <xref ref-type="table" rid="table4">Table 4</xref> Genotype 4 was the most prevalent representing (70%) cases in group I and (20%) cases in group II (responders). Followed by genotype 3b represented by (20%) cases in group I and 14/20 (70%) cases in group II. Then HCV genotypes 1a plus 2a was found in (5%) case in group I. Genotypes1b, 2b, 5 and 6 were not found in any of the studied patients.</p><p>Lavanchy, [<xref ref-type="bibr" rid="scirp.57582-ref14">14</xref>] proved that Egypt has the highest HCV prevalence in the world. Although HCV genotype 4 remains the predominant genotype in Egypt; Saleh et al., [<xref ref-type="bibr" rid="scirp.57582-ref15">15</xref>] revealed the presence of HCV genotype 3 in a significant percentage of Egyptian patients.</p><p>Several studies have shown that both HCV genotype 2 and 3 are associated with a better response to IFN therapy plus RBV than HCV genotype 1 and 4. HCV genotype 5 was considered to be sensitive to treatment [<xref ref-type="bibr" rid="scirp.57582-ref16">16</xref>] . HCV genotype 6 has a better response than genotype 1 [<xref ref-type="bibr" rid="scirp.57582-ref17">17</xref>] .</p><p>So, HCV genotype should be determined before treatment is started. The HCV genotype drives the treatment indication. Patients infected with HCV genotypes other than 1 should be treated with pegylated interferon (PEG-IFN) and RBV only. Patients infected with HCV genotype 1 should receive the triple combination of PEG-IFN, RBV and a protease inhibitor (either telaprevir or boceprevir) [<xref ref-type="bibr" rid="scirp.57582-ref18">18</xref>] [<xref ref-type="bibr" rid="scirp.57582-ref19">19</xref>] .</p><p>HCV genotyping is performed by several molecular techniques, such as sequencing of cloned genome, hybridization and Restriction Fragment Length Polymorphism (RFLP). The gold standard method for HCV genotyping is sequencing but this technique is expensive and requires many equipments and facilities, therefore not formidable in most regional laboratories. Contrary, RFLP is a sensitive and cost-effective method especially when a numerous amount of samples need to be genotyped. In RFLP, part of 5’-UTR is amplified by PCR and the amplicon is digested by restriction enzymes. The genotype of the HCV is determined based on the pattern of the fragments following digestion [<xref ref-type="bibr" rid="scirp.57582-ref20">20</xref>] .</p><p>Regarding degree of activity as a risk factor for response to treatment, degree of activity (A1 + A2) were found in (35%) patients in non responder group (group I) and (100 %) patients in responders group. (A3) was represented by (65%) of patient in non responder group and was not represented by any patient in responders group (0 %) (<xref ref-type="table" rid="table4">Table 4</xref>).</p><p>Pockros et al., [<xref ref-type="bibr" rid="scirp.57582-ref21">21</xref>] and J&#225;rmay et al., [<xref ref-type="bibr" rid="scirp.57582-ref22">22</xref>] stated that; there was a positive correlation between the degree of virological response and improvements in METAVIR activity and fibrosis, and an inverse correlation with worsening activity and fibrosis. Suggesting that, in patients with chronic hepatitis C who were treated with interferon-based therapies, histological benefits might be observed even in the absence of response to treatment.</p><p>On comparing patients in group I to patients in group II, it has been found that the most important risk factors for developing resistance are the increased HCV viral load, AST level and degree of fibrosis with P value 0.000 for each followed by degree of activity with P value 0.001 (<xref ref-type="table" rid="table4">Table 4</xref>). HCV-genotype and ALT as risk factors showed P value 0.004 for both.</p><p>However, regarding sex of the patients, there was no significant difference between group I and II.</p><p>On the contrary, Nachnani et al. [<xref ref-type="bibr" rid="scirp.57582-ref23">23</xref>] mentioned that absence of early viral response; AST and ALT levels were independent predictors of absence of response to treatment in patients with chronic HCV infection receiving PEG-IFN and RBV combination treatment.</p><p>In a study by Hung et al. [<xref ref-type="bibr" rid="scirp.57582-ref24">24</xref>] , he stated that HCV genotype remained the strongest predictor of treatment response [<xref ref-type="bibr" rid="scirp.57582-ref25">25</xref>] [<xref ref-type="bibr" rid="scirp.57582-ref26">26</xref>] .</p><p>In conclusion: the most frequent HCV genotype in resistant group were genotype I and IV, while in responder patient were genotype 2 &amp; 3. The most important risk factors in this study were viral load, HCV genotype, degree of activity and fibrosis.</p></sec></body><back><ref-list><title>References</title><ref id="scirp.57582-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Strader, D.B., Wright, T., Thomas, D.L. and Seeff, L.B. (2004) American Association for the Study of Liver Diseases. Diagnosis, Management, and Treatment of Hepatitis C. Hepatology, 39, 1147-1171. http://dx.doi.org/10.1002/hep.20119</mixed-citation></ref><ref id="scirp.57582-ref2"><label>2</label><mixed-citation publication-type="other" xlink:type="simple">Imazeki, F., Yokosuka, O., Fukai, K., et al. (2003) Favorable Prognosis of Chronic Hepatitis C after Interferon Therapy by Long-Term Cohort Study. Hepatology, 38, 493-502. http://dx.doi.org/10.1053/jhep.2003.50329</mixed-citation></ref><ref id="scirp.57582-ref3"><label>3</label><mixed-citation publication-type="other" xlink:type="simple">Chevaliez, S. and Pawlotsky, J.M. (2006) Hepatitis C Virus Serologic and Virologic Testes and Clinical Diagnosis of HCV-Related Liver Disease. International Journal of Medical Sciences, 3, 35-40. http://dx.doi.org/10.7150/ijms.3.35</mixed-citation></ref><ref id="scirp.57582-ref4"><label>4</label><mixed-citation publication-type="other" xlink:type="simple">National Institutes of Health Consensus Development Conference Statement (2002) Management of Hepatitis C. Hepatology, 36, S3-S20.</mixed-citation></ref><ref id="scirp.57582-ref5"><label>5</label><mixed-citation publication-type="other" xlink:type="simple">Houck, D.R. (2006) Preclinical Evaluation of SCY-635, a Cyclophilin Inhibitor with Potent Anti-HCV Activity. Hepatology, 44, S534.</mixed-citation></ref><ref id="scirp.57582-ref6"><label>6</label><mixed-citation publication-type="other" xlink:type="simple">Farci, P. and Purcell, R.H. (2000) Clinical Significance of Hepatitis C Virus Genotypes and Quasispecies. Seminars in Liver Disease, 20, 10-126.</mixed-citation></ref><ref id="scirp.57582-ref7"><label>7</label><mixed-citation publication-type="other" xlink:type="simple">Bedossa, P. and Poynard, T. (1996) An Algorithm for the Grading of Activity in Chronic Hepatitis C. The METAVIR Cooperative Study Group. Hepatology, 24, 289-293. http://dx.doi.org/10.1002/hep.510240201</mixed-citation></ref><ref id="scirp.57582-ref8"><label>8</label><mixed-citation publication-type="other" xlink:type="simple">Kaplan, M.M. and Bonis, P.A. (2009) Histologic Scoring Systems for Chronic Liver Disease.</mixed-citation></ref><ref id="scirp.57582-ref9"><label>9</label><mixed-citation publication-type="other" xlink:type="simple">Pohjanpelto, P., Lappalainen, M., Widell, A., Asikainen, K. and Paunio, M. (1996) Hepatitis C Genotypes in Finland Determined by RFLP. Clinical and Diagnostic Virology, 7, 7-16. http://dx.doi.org/10.1016/S0928-0197(96)00242-5</mixed-citation></ref><ref id="scirp.57582-ref10"><label>10</label><mixed-citation publication-type="other" xlink:type="simple">Simmonds, P. (2004) Genetic Diversity and Evolution of Hepatitis C Virus—15 Years on. Journal of General Virology, 85, 3173-3188. http://dx.doi.org/10.1099/vir.0.80401-0</mixed-citation></ref><ref id="scirp.57582-ref11"><label>11</label><mixed-citation publication-type="book" xlink:type="simple">Levrero, M. (2003) Cellular Mechanisms of Resistance to INFS. In: Ferenci, P., Ed., EASL Postgraduate Course, Istanbul, Turkey, Kenes International, Geneva.</mixed-citation></ref><ref id="scirp.57582-ref12"><label>12</label><mixed-citation publication-type="other" xlink:type="simple">Alsaran, K., Sabry, A. and Shaheen, N. (2011) Pegylated Interferon Alpha-2a for Treatment of Chronic HCV Infection in Hemodialysis Patients: A Single Saudi Center Experience. International Urology and Nephrology, 43, 865-873. http://dx.doi.org/10.1007/s11255-010-9756-1</mixed-citation></ref><ref id="scirp.57582-ref13"><label>13</label><mixed-citation publication-type="other" xlink:type="simple">Balan, V., Schwartz, D., Wu, G.Y., Muir, A.J., Ghalib, R., Jackson, J., Keeffe, E.B., Rossaro, L., Burnett, A., Goon, B.L., Bowers, P.J. and Leitz, G.J. (2005) Erythropoietic Response to Anemia in Chronic Hepatitis C Patients Receiving Combination Pegylated Interferon/Ribavirin Erythropoietic Response to IFN/RBV Therapy. The American Journal of Gastroenterology, 100, 299-307. http://dx.doi.org/10.1111/j.1572-0241.2005.40757.x</mixed-citation></ref><ref id="scirp.57582-ref14"><label>14</label><mixed-citation publication-type="other" xlink:type="simple">Lavanchy, D. (2011) Evolving Epidemiology of Hepa-titis C Virus. Clinical Microbiology and Infection, 17, 107-115. http://dx.doi.org/10.1111/j.1469-0691.2010.03432.x</mixed-citation></ref><ref id="scirp.57582-ref15"><label>15</label><mixed-citation publication-type="other" xlink:type="simple">Saleh, O., Baiomy, A.A., El-Desouky, A., Zaghloul, H., El-Arman, M., Dahab, G.M. and Abdel-Rahman, M.S. (2013) Hepatitis C Virus Genotype Distribution in Egyptian Diabetic Patients: A Preliminary Study. Arab Journal of Gastroenterology, 14, 14-19. http://dx.doi.org/10.1016/j.ajg.2013.01.005</mixed-citation></ref><ref id="scirp.57582-ref16"><label>16</label><mixed-citation publication-type="other" xlink:type="simple">Abravanel, F.L., Sauné1, K.S., Barange, K., Alric, L., Moreau, J., Desmorat, P., Vinel, J.P. and Izopet, J. (2004) Hepatitis C Virus Genotype 5: Epidemiological Characteristics and Sensitivity to Combination Therapy with Interferon-α Plus Ribavirin. The Journal of Infectious Diseases, 189, 1397-1400. http://dx.doi.org/10.1086/382544</mixed-citation></ref><ref id="scirp.57582-ref17"><label>17</label><mixed-citation publication-type="other" xlink:type="simple">Hui, C.K., Yuen, M.F., Sablon, E., Chan, A.O., Wong, B.C. and Lai, C.L. (2003) Interferon and Ribavirin Therapy for Chronic Hepatitis C Virus Genotype 6: A Comparison with Genotype 1. The Journal of Infectious Diseases, 187, 1071-1074. http://dx.doi.org/10.1086/368217</mixed-citation></ref><ref id="scirp.57582-ref18"><label>18</label><mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Chevaliez</surname><given-names> S. </given-names></name>,<etal>et al</etal>. (<year>2013</year>)<article-title>New Markers for Diagnosis and Management of Chronic Hepatitis C Virus Infection</article-title><source> Annals of Gastroenterology</source><volume> 26</volume>,<fpage> 98</fpage>-<lpage>99</lpage>.<pub-id pub-id-type="doi"></pub-id></mixed-citation></ref><ref id="scirp.57582-ref19"><label>19</label><mixed-citation publication-type="other" xlink:type="simple">DeLeuw, P., Sarraz, C. and Zeuzem, S. (2011) How to Use Virological Tools for the Optimal Management of Chronic Hepatitis C. Liver International, 31, 3-12. http://dx.doi.org/10.1111/j.1478-3231.2010.02398.x</mixed-citation></ref><ref id="scirp.57582-ref20"><label>20</label><mixed-citation publication-type="other" xlink:type="simple">Hamidi, F.M., Samarbaf, Z.A., Makvandi, M. and Hajiani, E. (2009) Determination of HCV Genotypes among Chronic Hepatic Patients in Ahvaz. Iranian Journal of Virology, 3, 12-16.</mixed-citation></ref><ref id="scirp.57582-ref21"><label>21</label><mixed-citation publication-type="other" xlink:type="simple">Pockros, P.J., Hamze, F.M., Martin, P., Lentz, E., Zhou, X., Govindarajan, S. and Lok, A.S. (2010) Histologic Outcomes in Hepatitis C—Infected Patients with Varying Degrees of Virologic Response to Interferon-Based Treatments. Hepatology, 52, 1193-1200. http://dx.doi.org/10.1002/hep.23809</mixed-citation></ref><ref id="scirp.57582-ref22"><label>22</label><mixed-citation publication-type="other" xlink:type="simple">Jármay, K., Lonovics, J. and Schaff, Z. (2003) Clinicopathologic Observations on Chronic Hepatitis C Therapy with Interferon-Alpha. Orvosi Hetilap, 144, 1325-1330.</mixed-citation></ref><ref id="scirp.57582-ref23"><label>23</label><mixed-citation publication-type="other" xlink:type="simple">Nachnani, J.S., Gidwani, R., Sadeddin, E., Clarkston, W.K., Fiorella, R. and Alba, L.M. (2007) Clinical Pathological Predictors to Predict Sustained Viral Response Rates in Patients with Chronic Hepatitis C Infection. Indian Journal of Gastroenterology, 26, 279-282.</mixed-citation></ref><ref id="scirp.57582-ref24"><label>24</label><mixed-citation publication-type="other" xlink:type="simple">Hung, C.H., Lee, C.M., Lu, S.N., Wang, J.H., Chen, C.H., Hu, T.H., Kee, K.M., Chang, K.C., Tseng, P.L., Yen, Y.H. and Changchien, C.S. (2006) Anemia Associated with Antiviral Therapy in Chronic Hepatitis C: Incidence, Risk Factors, and Impact on Treatment Response. Liver International, 26, 1079-1086. http://dx.doi.org/10.1111/j.1478-3231.2006.01354.x</mixed-citation></ref><ref id="scirp.57582-ref25"><label>25</label><mixed-citation publication-type="other" xlink:type="simple">Zeuzem, S., Feinman, S.V., Rasenack, J., et al. (2000) Peginterferon Alfa-2a in Patients with Chronic Hepatitis C. The New England Journal of Medicine, 343, 1666-1672. http://dx.doi.org/10.1056/NEJM200012073432301</mixed-citation></ref><ref id="scirp.57582-ref26"><label>26</label><mixed-citation publication-type="other" xlink:type="simple">Kau, A., Vermehren, J. and Sarrazin, C. (2008) Treatment Predictors of a Sustained Virologic Response in Hepatitis B and C. Journal of Hepatology, 49, 634-651. http://dx.doi.org/10.1016/j.jhep.2008.07.013</mixed-citation></ref></ref-list></back></article>