<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">OJS</journal-id><journal-title-group><journal-title>Open Journal of Statistics</journal-title></journal-title-group><issn pub-type="epub">2161-718X</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ojs.2015.52016</article-id><article-id pub-id-type="publisher-id">OJS-55808</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Physics&amp;Mathematics</subject></subj-group></article-categories><title-group><article-title>
 
 
  Bayesian Inference of Spatially Correlated Binary Data Using Skew-Normal Latent Variables with Application in Tooth Caries Analysis
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>olaiman</surname><given-names>Afroughi</given-names></name><xref ref-type="aff" rid="aff1"><sub>1</sub></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>Department of Biostatistics and Epidemiology, Social Determinants of Health Research Centre, Yasuj University of Medical Sciences, Yasuj, Iran</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>safroughi@yahoo.com</email></corresp></author-notes><pub-date pub-type="epub"><day>13</day><month>04</month><year>2015</year></pub-date><volume>05</volume><issue>02</issue><fpage>127</fpage><lpage>139</lpage><history><date date-type="received"><day>3</day>	<month>August</month>	<year>2014</year></date><date date-type="rev-recd"><day>accepted</day>	<month>16</month>	<year>April</year>	</date><date date-type="accepted"><day>20</day>	<month>April</month>	<year>2015</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  The analysis of spatially correlated binary data observed on lattices is an interesting topic that catches the attention of many scholars of different scientific fields like epidemiology, medicine, agriculture, biology, geology and geography. To overcome the encountered difficulties upon fitting the autologistic regression model to analyze such data via Bayesian and/or Markov chain Monte Carlo (MCMC) techniques, the Gaussian latent variable model has been enrolled in the methodology. Assuming a normal distribution for the latent random variable may not be realistic and wrong, normal assumptions might cause bias in parameter estimates and affect the accuracy of results and inferences. Thus, it entails more flexible prior distributions for the latent variable in the spatial models. A review of the recent literature in spatial statistics shows that there is an increasing tendency in presenting models that are involving skew distributions, especially skew-normal ones. In this study, a skew-normal latent variable modeling was developed in Bayesian analysis of the spatially correlated binary data that were acquired on uncorrelated lattices. The proposed methodology was applied in inspecting spatial dependency and related factors of tooth caries occurrences in a sample of students of Yasuj University of Medical Sciences, Yasuj, Iran. The results indicated that the skew-normal latent variable model had validity and it made a decent criterion that fitted caries data.
 
</p></abstract><kwd-group><kwd>Spatial Data</kwd><kwd> Latent Variable</kwd><kwd> Autologistic Model</kwd><kwd> Skew-Normal Distribution</kwd><kwd> Bayesian Inference</kwd><kwd> Tooth Caries</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>The analysis of spatially correlated binary data observed on lattices is an interesting topic that catches the attention of many scholars of different scientific fields like epidemiology, medicine, agriculture, biology, geology and geography [<xref ref-type="bibr" rid="scirp.55808-ref1">1</xref>] -[<xref ref-type="bibr" rid="scirp.55808-ref11">11</xref>] . A review of the spatial statistical literature reveals that the autologistic regression, as a special case of the conditional autoregressive (CAR) models, is the main tool for analyzing the binary data collected from random fields [<xref ref-type="bibr" rid="scirp.55808-ref12">12</xref>] - [<xref ref-type="bibr" rid="scirp.55808-ref20">20</xref>] . Since the autologistic model normalizing factor does not have a closed form, it is tough to handle it [<xref ref-type="bibr" rid="scirp.55808-ref4">4</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref21">21</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref22">22</xref>] . So, following the traditional estimation methods, other inferential methods such as Bayesian paradigm were proposed to decline computational complications or to augment the efficiency of the estimates of model parameters [<xref ref-type="bibr" rid="scirp.55808-ref4">4</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref23">23</xref>] - [<xref ref-type="bibr" rid="scirp.55808-ref25">25</xref>] . To overcome the encountered difficulties upon fitting the autologistic regression model to analyze such data via Bayesian and/or Markov chain Monte Carlo (MCMC) techniques, the Gaussian latent variable method has been enrolled in the spatial generalized linear models [<xref ref-type="bibr" rid="scirp.55808-ref3">3</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref8">8</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref13">13</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref26">26</xref>] . Assuming a normal distribution for the latent random variable may not be realistic, so wrong, normal assumptions might cause bias in parameter estimates and affect the accuracy of results and inferences of the proposed methodology [<xref ref-type="bibr" rid="scirp.55808-ref1">1</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref5">5</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref6">6</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref27">27</xref>] - [<xref ref-type="bibr" rid="scirp.55808-ref29">29</xref>] . Thus, it entails more flexible prior distributions for the latent variable in the spatial models [<xref ref-type="bibr" rid="scirp.55808-ref30">30</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref31">31</xref>] . A review of the recent literature in spatial statistics shows that there is an increasing tendency in presenting models that are involving skew distributions, especially skew-normal ones [<xref ref-type="bibr" rid="scirp.55808-ref8">8</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref27">27</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref29">29</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref32">32</xref>] - [<xref ref-type="bibr" rid="scirp.55808-ref36">36</xref>] .</p><p>The univariate skew-normal distribution, a pioneering work started by Azzalini [<xref ref-type="bibr" rid="scirp.55808-ref37">37</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref38">38</xref>] , has many similar properties to normal distribution and include an extra parameter which regulates (represents) its skewness [<xref ref-type="bibr" rid="scirp.55808-ref35">35</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref37">37</xref>] - [<xref ref-type="bibr" rid="scirp.55808-ref42">42</xref>] . The multivariate case and its marginal distributions as well as the extended conditional versions of the skew-normal distributions were developed by Azzalini and Dalla Valle [<xref ref-type="bibr" rid="scirp.55808-ref43">43</xref>] , Azzalini and Capitanio [<xref ref-type="bibr" rid="scirp.55808-ref44">44</xref>] and Azzalini [<xref ref-type="bibr" rid="scirp.55808-ref45">45</xref>] .</p><p>The main capability of this class of distributions in applications is its ability in capturing and simplicity modeling departures from symmetry, whilst retaining tractability and closeness [<xref ref-type="bibr" rid="scirp.55808-ref46">46</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref47">47</xref>] . Following the development in spatial domain by Kim et al. [<xref ref-type="bibr" rid="scirp.55808-ref33">33</xref>] and Kim and Mallick [<xref ref-type="bibr" rid="scirp.55808-ref34">34</xref>] , the authors such as Zhang and El-Shaaravi [<xref ref-type="bibr" rid="scirp.55808-ref29">29</xref>] , Mohamadzadeh and Hosseini [<xref ref-type="bibr" rid="scirp.55808-ref31">31</xref>] , Flecher et al. [<xref ref-type="bibr" rid="scirp.55808-ref27">27</xref>] and Allard and Soubeyrand [<xref ref-type="bibr" rid="scirp.55808-ref2">2</xref>] , used the skew-nor- mal distribution in analyzing spatial structure models. Moreover, Kim and Mallick [<xref ref-type="bibr" rid="scirp.55808-ref6">6</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref48">48</xref>] and Karimi and Mohammadzadeh [<xref ref-type="bibr" rid="scirp.55808-ref5">5</xref>] , implemented a Bayesian analysis in modeling skew-normal spatial observations. Although Hosseini et al. [<xref ref-type="bibr" rid="scirp.55808-ref3">3</xref>] incorporated the skew-normal latent variables in inference from a spatial generalized mixed model, no studies were found considering skew-normal latent variables in analysis of spatially correlated binary data modeled via autologistic regression [<xref ref-type="bibr" rid="scirp.55808-ref8">8</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref49">49</xref>] - [<xref ref-type="bibr" rid="scirp.55808-ref51">51</xref>] .</p><p>In this study, a skew-normal latent variable modeling in Bayesian analysis of the spatially correlated binary data acquired on uncorrelated lattices will be developed.</p></sec><sec id="s2"><title>2. Statistical Models</title><sec id="s2_1"><title>2.1. Modeling Based on the Autologistic Regression</title><p>Let <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x5.png" xlink:type="simple"/></inline-formula> be the binary (1/0) observations at n sites of the ith element of a set of N uncorrelated and uniform lattices [<xref ref-type="bibr" rid="scirp.55808-ref4">4</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref20">20</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref52">52</xref>] . We suppose that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x6.png" xlink:type="simple"/></inline-formula> be the m-vector of covariates related to response variable<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x7.png" xlink:type="simple"/></inline-formula>. Thus, in lattice i, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x8.png" xlink:type="simple"/></inline-formula>is a random field and the observations <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x9.png" xlink:type="simple"/></inline-formula> are spatially correlated binary data [<xref ref-type="bibr" rid="scirp.55808-ref15">15</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref52">52</xref>] , to the extent that neighboring observations affect a site observation. Thus the appropriate model is the autologistic regression which incorporates the effects of neighboring responses and covariates simultaneously and is a Markov random field model [<xref ref-type="bibr" rid="scirp.55808-ref20">20</xref>] defined as the conditional probability<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x10.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x11.png" xlink:type="simple"/></inline-formula> given all other values<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x12.png" xlink:type="simple"/></inline-formula>:</p><disp-formula id="scirp.55808-formula789"><label>(1)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x13.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x14.png" xlink:type="simple"/></inline-formula> as defined before is the vector of covariates of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x15.png" xlink:type="simple"/></inline-formula> with its first element 1; <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x16.png" xlink:type="simple"/></inline-formula>is the vector of coefficients of the covariates<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x17.png" xlink:type="simple"/></inline-formula>; and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x18.png" xlink:type="simple"/></inline-formula> is the coefficient of spatial auto covariate<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x19.png" xlink:type="simple"/></inline-formula>, such that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x20.png" xlink:type="simple"/></inline-formula> denotes indices of the first-order neighborhood set of site j in lattice<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x20.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x21.png" xlink:type="simple"/></inline-formula>, which for a rectangular lattice, is defined as adjacent two vertical and two horizontal sites. We assume that the model (1) is a fixed effect and the spatial associations that are obeying an isotropic function are stationeries [<xref ref-type="bibr" rid="scirp.55808-ref52">52</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref53">53</xref>] . Hence, effects of individual lattices and coefficients are the same at neighboring sites as well as in all directions [<xref ref-type="bibr" rid="scirp.55808-ref54">54</xref>] .</p><p>Based on the Equation (1), the joint probability model of the <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x22.png" xlink:type="simple"/></inline-formula> (vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x22.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x23.png" xlink:type="simple"/></inline-formula>) is</p><disp-formula id="scirp.55808-formula790"><label>(2)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x24.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x25.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x25.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x26.png" xlink:type="simple"/></inline-formula> is a normalizing factor obtained by summing overall possible realiza-</p><p>tions of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x27.png" xlink:type="simple"/></inline-formula> namely</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x28.png" xlink:type="simple"/></inline-formula>,</p><p>and for all observations <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x29.png" xlink:type="simple"/></inline-formula> is</p><disp-formula id="scirp.55808-formula791"><label>(3)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x30.png"  xlink:type="simple"/></disp-formula><p>In this stage the set of parameters is denoted by<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x31.png" xlink:type="simple"/></inline-formula>.</p><p>The parameter estimation of the models (1) to (3), which are based on the autologistic model, using traditional [<xref ref-type="bibr" rid="scirp.55808-ref15">15</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref23">23</xref>] , Bayesian [<xref ref-type="bibr" rid="scirp.55808-ref24">24</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref25">25</xref>] or Markov chain Monte Carlo methods [<xref ref-type="bibr" rid="scirp.55808-ref19">19</xref>] , is time-consuming and might expose limitations and complications [<xref ref-type="bibr" rid="scirp.55808-ref21">21</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref51">51</xref>] . Consequently, the authors such as Afroughi et al. [<xref ref-type="bibr" rid="scirp.55808-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref13">13</xref>] with introducing Gaussian latent variables, made easier the computational implications in proposed models. The current study implements a posterior analysis with the help of skew-Gaussian latent variable modeling [<xref ref-type="bibr" rid="scirp.55808-ref6">6</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref37">37</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref38">38</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref43">43</xref>] - [<xref ref-type="bibr" rid="scirp.55808-ref45">45</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref55">55</xref>] .</p></sec><sec id="s2_2"><title>2.2. Using Skew-Normal Latent Variables Model</title><p>Let <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x32.png" xlink:type="simple"/></inline-formula> be the vector of latent variables corresponding to<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x32.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x33.png" xlink:type="simple"/></inline-formula>, so that for every observed binary</p><p>variable<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x34.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x34.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x35.png" xlink:type="simple"/></inline-formula>and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x34.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x35.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x36.png" xlink:type="simple"/></inline-formula>. We assume that based on the Azzalini</p><p>and Dalla Valle [<xref ref-type="bibr" rid="scirp.55808-ref43">43</xref>] , Azzalini and Capitanio [<xref ref-type="bibr" rid="scirp.55808-ref44">44</xref>] , Liseo and Loperfido [<xref ref-type="bibr" rid="scirp.55808-ref46">46</xref>] , Ashur and Abdel-Hameed [<xref ref-type="bibr" rid="scirp.55808-ref56">56</xref>] , Gupta et al. [<xref ref-type="bibr" rid="scirp.55808-ref41">41</xref>] , Liseo and Parisi [<xref ref-type="bibr" rid="scirp.55808-ref57">57</xref>] and Figueiredo and Gomes [<xref ref-type="bibr" rid="scirp.55808-ref58">58</xref>] , the n-dimensional random vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x37.png" xlink:type="simple"/></inline-formula> has a multivariate skew-normal distribution with n-dimentional location parameters vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x37.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x38.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x37.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x38.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x39.png" xlink:type="simple"/></inline-formula>positive-definite variance-covariance matrix <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x37.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x38.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x39.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x40.png" xlink:type="simple"/></inline-formula> and skewness parameters vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x37.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x38.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x39.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x40.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x41.png" xlink:type="simple"/></inline-formula>, written as<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x37.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x38.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x39.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x40.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x41.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x42.png" xlink:type="simple"/></inline-formula>, with probability density function</p><disp-formula id="scirp.55808-formula792"><label>(4)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x43.png"  xlink:type="simple"/></disp-formula><p>where ϕ<sub>n</sub> and Φ are n-dimensional normal density and standard normal cumulative distribution functions, respectively, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula>such that 1<sub>n</sub> is a n &#215; 1 vector of 1 and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula>and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula> is a diagonal matrix such that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x50.png" xlink:type="simple"/></inline-formula> is the correlation (positive definite) matrix of the vector<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x51.png" xlink:type="simple"/></inline-formula>, the spatially correlated variables<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x51.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x52.png" xlink:type="simple"/></inline-formula>. If the element of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x51.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x52.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x53.png" xlink:type="simple"/></inline-formula> is denoted by <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x51.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x52.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x53.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x54.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x51.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x52.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x53.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x54.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x55.png" xlink:type="simple"/></inline-formula>, then<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x51.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x52.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x53.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x54.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x55.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x56.png" xlink:type="simple"/></inline-formula>. The element of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x44.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x45.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x46.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x47.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x48.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x49.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x50.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x51.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x52.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x53.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x54.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x55.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x56.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x57.png" xlink:type="simple"/></inline-formula> in lattice i is defined in the equation below, such that</p><disp-formula id="scirp.55808-formula793"><label>(5)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x58.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x61.png" xlink:type="simple"/></inline-formula> is the Euclidian distance between sites <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x62.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x62.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x63.png" xlink:type="simple"/></inline-formula> in the lattice<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x62.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x63.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x64.png" xlink:type="simple"/></inline-formula>, and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x62.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x63.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x64.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x65.png" xlink:type="simple"/></inline-formula> is the correlation parameter which measures smoothness of the correlation function <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x61.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x62.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x63.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x64.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x65.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x66.png" xlink:type="simple"/></inline-formula> [<xref ref-type="bibr" rid="scirp.55808-ref6">6</xref>] . Thus, the final states of the model and its parameters are</p><disp-formula id="scirp.55808-formula794"><label>(6)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x68.png"  xlink:type="simple"/></disp-formula><p>and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x69.png" xlink:type="simple"/></inline-formula>, respectively.</p></sec><sec id="s2_3"><title>2.3. Bayesian Inference</title><p>The latent variable <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x70.png" xlink:type="simple"/></inline-formula> is augmented to the acquired data<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x70.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x71.png" xlink:type="simple"/></inline-formula>, so the posterior function of parameters and latent variables are<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x70.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x71.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x72.png" xlink:type="simple"/></inline-formula>. Since, this function has a complicated form, sample generations could be done by full conditional functions <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x70.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x71.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x72.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x73.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x70.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x71.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x72.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x73.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x74.png" xlink:type="simple"/></inline-formula>, using Gibbs sampler technique [<xref ref-type="bibr" rid="scirp.55808-ref59">59</xref>] . To generate i.i.d. samples from<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x70.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x71.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x72.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x73.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x74.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x75.png" xlink:type="simple"/></inline-formula>, first sample generation must be down from<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x70.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x71.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x72.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x73.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x74.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x75.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x76.png" xlink:type="simple"/></inline-formula>. The analytic process for exploiting the above functions and/or related conditional distributions with Markov chain Monte Carlo methods is presented as follows.</p><p>a) Inlattice i, the distribution of the skew-normal (latents) vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x77.png" xlink:type="simple"/></inline-formula> is</p><disp-formula id="scirp.55808-formula795"><label>(7)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x78.png"  xlink:type="simple"/></disp-formula><p>which is a multivariate truncated skew-normal distribution [<xref ref-type="bibr" rid="scirp.55808-ref60">60</xref>] . Based on the Gibbs sampling technique, the related full conditionals, which are univariate truncated skew-normal distributions, are given as below:</p><disp-formula id="scirp.55808-formula796"><label>(8)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x79.png"  xlink:type="simple"/></disp-formula><p>where,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x80.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x81.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x82.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x83.png" xlink:type="simple"/></inline-formula>, ,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x85.png" xlink:type="simple"/></inline-formula>,</p><disp-formula id="scirp.55808-formula797"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x86.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.55808-formula798"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x87.png"  xlink:type="simple"/></disp-formula><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x88.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x89.png" xlink:type="simple"/></inline-formula>,</p><p>and Σ<sub>12</sub>, Σ<sub>22</sub> and Σ<sub>21</sub> are the submatrixes of the n &#215; n partitioned correlation matrix Σ of the vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x90.png" xlink:type="simple"/></inline-formula></p><p>such that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x91.png" xlink:type="simple"/></inline-formula>.</p><p>b) The posterior distribution <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x92.png" xlink:type="simple"/></inline-formula> is equal to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x92.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x93.png" xlink:type="simple"/></inline-formula> or<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x92.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x93.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x94.png" xlink:type="simple"/></inline-formula>.</p><p>Again, based on the Gibbs sampling technique [<xref ref-type="bibr" rid="scirp.55808-ref61">61</xref>] and assumption of prior independence of parameters, the related full conditional functions are given as follow:</p><p>b-1):</p><disp-formula id="scirp.55808-formula799"><label>(9)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x95.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x96.png" xlink:type="simple"/></inline-formula> in which <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x96.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x97.png" xlink:type="simple"/></inline-formula></p><p>Such that</p><disp-formula id="scirp.55808-formula800"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x98.png"  xlink:type="simple"/></disp-formula><p>or in other form</p><disp-formula id="scirp.55808-formula801"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x99.png"  xlink:type="simple"/></disp-formula><p>since</p><disp-formula id="scirp.55808-formula802"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x100.png"  xlink:type="simple"/></disp-formula><p>Then</p><disp-formula id="scirp.55808-formula803"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x101.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x102.png" xlink:type="simple"/></inline-formula> is the prior distribution of the vector <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x102.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x103.png" xlink:type="simple"/></inline-formula> such that<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x102.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x103.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x104.png" xlink:type="simple"/></inline-formula>.</p><p>Therefore,</p><disp-formula id="scirp.55808-formula804"><label>(10)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x105.png"  xlink:type="simple"/></disp-formula><p>where</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x106.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x108.png" xlink:type="simple"/></inline-formula>and</p><p>b-2):</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x110.png" xlink:type="simple"/></inline-formula>(11).</p><p>where the above equations <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x111.png" xlink:type="simple"/></inline-formula> is the prior distribution of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x111.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x112.png" xlink:type="simple"/></inline-formula> and assumed Gamma distribution<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x111.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x112.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x113.png" xlink:type="simple"/></inline-formula>. So</p><disp-formula id="scirp.55808-formula805"><label>(12)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x114.png"  xlink:type="simple"/></disp-formula><p>As it is evident, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x115.png" xlink:type="simple"/></inline-formula>does not have a specified form and we can sample again from this distribu-</p><p>tion through Metropolis-Hastings [<xref ref-type="bibr" rid="scirp.55808-ref59">59</xref>] steps with proposed density <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x116.png" xlink:type="simple"/></inline-formula> where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x116.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x117.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x116.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x117.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x118.png" xlink:type="simple"/></inline-formula></p><p>(Appendix A) are derived from <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x119.png" xlink:type="simple"/></inline-formula> and<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x119.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x120.png" xlink:type="simple"/></inline-formula>, respectively .</p><p>b-3):</p><disp-formula id="scirp.55808-formula806"><label>(13)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x121.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x122.png" xlink:type="simple"/></inline-formula> is the prior distribution of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x122.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x123.png" xlink:type="simple"/></inline-formula> and assumed uniform in (0, 1). In order to generate a sample from<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x122.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x123.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x124.png" xlink:type="simple"/></inline-formula>, which has not a closed form, we use Metropolis-Hastings algorithm [<xref ref-type="bibr" rid="scirp.55808-ref59">59</xref>] as follows. The correlation parameter <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x122.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x123.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x124.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x125.png" xlink:type="simple"/></inline-formula> is changed to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x122.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x123.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x124.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x125.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x126.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x122.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x123.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x124.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x125.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x126.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x127.png" xlink:type="simple"/></inline-formula> is generated from the proposed density</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x128.png" xlink:type="simple"/></inline-formula>.</p><p>The value</p><disp-formula id="scirp.55808-formula807"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x129.png"  xlink:type="simple"/></disp-formula><p>is accepted with regard to <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x131.png" xlink:type="simple"/></inline-formula> and probability of</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x133.png" xlink:type="simple"/></inline-formula>.</p><p>b-4):</p><disp-formula id="scirp.55808-formula808"><label>(14)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x134.png"  xlink:type="simple"/></disp-formula><p>where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x135.png" xlink:type="simple"/></inline-formula> is the prior distribution of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x135.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x136.png" xlink:type="simple"/></inline-formula> and since we assumed priori<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x135.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x136.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x137.png" xlink:type="simple"/></inline-formula>, then</p><disp-formula id="scirp.55808-formula809"><label>(15)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x138.png"  xlink:type="simple"/></disp-formula><p>this distribution does not have a closed form and we could sample from it again through Metropolis-Hasting technique with proposed density<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x139.png" xlink:type="simple"/></inline-formula>.</p></sec></sec><sec id="s3"><title>3. Application</title><p>In this section, the proposed methods are applied to the actual data-set that were collected in a study designed to explore spatial dependency and related factors in tooth caries experiences in a random sample of size 132 taken from students of Yasuj University of Medical Sciences, Iran, in 2012. A team of oral health hygienists working in a dentistry centre gathered data as follows. First, information regarding demographic, social and mouth healthcare were obtained through a questionnaire. Then, each tooth along with its periodontal in the complete (32) teeth set of every student were assessed and the presence of caries in each surface of a tooth and gingivitis in its periodontal was diagnosed based on the clinical methods [<xref ref-type="bibr" rid="scirp.55808-ref62">62</xref>] like light, mirror and sound. Additionally, the teeth of each subject were stratified as sound, carious, missing and/or filled due to caries, and a chart was prepared denoting the caries status and site position of each tooth in his/her mouth. The above steps were approved by adentist and a professor of pediatric dentistry.</p><p>The autologistic model (1) is fitted to data such that <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula> is the binary response variable of tooth j in subject i where <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x141.png" xlink:type="simple"/></inline-formula> indicates that a tooth is decayed, missed or filled due to caries, and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x142.png" xlink:type="simple"/></inline-formula> if it is sound [<xref ref-type="bibr" rid="scirp.55808-ref49">49</xref>] . Further <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x143.png" xlink:type="simple"/></inline-formula> denotes that the covariates in subject and tooth levels including age (in years), gender (1 = male, 0 = female), gingivitis (gingv) (1 = present, 0 = otherwise), father occupation (ocf) (1 = official worker, 0 = otherwise), father education (edf) (1 = university educalated, 0 = otherwise), teeth were check up at least once in every 6 months by a dentist (vizd6) (1 = yes, 0 = no) at least brushing the teeth once in a day (tbr) (1 = yes, 0 = no), and every day tooth flossing (tfl) (1 = yes, 0 = no). Additionally, the sum of three responses in the first-or- der neighborhood teeth (<xref ref-type="fig" rid="fig1">Figure 1</xref>) of a<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x144.png" xlink:type="simple"/></inline-formula>, constitutes the spatial autocovriate (spacov)<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x144.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x145.png" xlink:type="simple"/></inline-formula>. The coefficients of explanatory covariates and spatial autocovariate are denoted by <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x144.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x145.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x146.png" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x144.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x145.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x146.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x147.png" xlink:type="simple"/></inline-formula> respectively. As was explained in previous work [<xref ref-type="bibr" rid="scirp.55808-ref54">54</xref>] , the teeth caries statuses <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x140.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x141.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x142.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x143.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x144.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x145.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x146.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x147.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x148.png" xlink:type="simple"/></inline-formula> in a mouth are spatially correlated binary data clustered in uncorrelated (subjects) lattices. Accordingly, the posited extended autologistic model (1) based on the logit link is as follows.</p><disp-formula id="scirp.55808-formula810"><label>(16)</label><graphic position="anchor" xlink:href="http://html.scirp.org/file/5-1240403x149.png"  xlink:type="simple"/></disp-formula><p>The Bayesian estimations of parameters using Gibbs sampling and MCMC technique were obtained through programming coded in freeware R [<xref ref-type="bibr" rid="scirp.55808-ref63">63</xref>] version 3.1 as follows. First based on the adopted prior distributions</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x150.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x150.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x151.png" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x150.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x151.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x152.png" xlink:type="simple"/></inline-formula>and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x150.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x151.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x152.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x153.png" xlink:type="simple"/></inline-formula> for the parameters<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x150.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x151.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x152.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x153.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x154.png" xlink:type="simple"/></inline-formula>, γ, <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x150.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x151.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x152.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x153.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x154.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x155.png" xlink:type="simple"/></inline-formula>,</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x156.png" xlink:type="simple"/></inline-formula>, respectively, a sample of <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x156.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x157.png" xlink:type="simple"/></inline-formula> were generated [<xref ref-type="bibr" rid="scirp.55808-ref51">51</xref>] from skew-normal distribution (8). Then, implementing these <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x156.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x157.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x158.png" xlink:type="simple"/></inline-formula> in each of 50 iterations a sample of size 10000 of parameters <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x156.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x157.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x158.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x159.png" xlink:type="simple"/></inline-formula> were simulated from full conditional distributions (10), (12), (13) and (15), and after discarding first 4000 samples, the rest were applied to estimate the parameters.</p><p>The estimates of the parameters such as mean, standard errors (SE) as well as the 95% credible intervals are summarized in <xref ref-type="table" rid="table">Table </xref>l. As is shown from this table, the coefficients of constant value, spatial auto covariate, the covariates gender, age, father occupation and father education and the skewness parameter are significantly different from zero. These findings demonstrated that caries statuses in neighboring teeth had influenced in caries occurrence in a tooth, female and younger students were more susceptible to tooth decaying and students whose fathers were official workers and/or university educated had lower tooth caries experiences. Further, as the contents of this table indicate, the gingivitis in a student notably arises caries occurrence in his (or her) teeth. Although the tooth brushing prevents the dental caries, yet, it doesn’t have a significant impact. Furthermore, the estimate of the skewness parameter is different from (below) zero in a considerable case which indicates that the latent variable is highly skewed to the right side.</p><fig id="fig1"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref></label><caption><title> Spatial locations of complete (32) teeth in lattice system</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/5-1240403x160.png"/></fig><table-wrap id="table1" ><label><xref ref-type="table" rid="table">Table </xref>1</label><caption><title> Results of parameter estimations of the skew-normal latent variable model</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Covariate</th><th align="center" valign="middle" >Parameter</th><th align="center" valign="middle" >Estimate</th><th align="center" valign="middle" >Standard error</th><th align="center" valign="middle" >95% Cridble interval</th></tr></thead><tr><td align="center" valign="middle" >Constant</td><td align="center" valign="middle" >B0</td><td align="center" valign="middle" >−0.1037</td><td align="center" valign="middle" >0.044</td><td align="center" valign="middle" >(−0.1477, −0.097)</td></tr><tr><td align="center" valign="middle" >Ginv</td><td align="center" valign="middle" >B1</td><td align="center" valign="middle" >0.0713</td><td align="center" valign="middle" >0.027</td><td align="center" valign="middle" >(0.0173, 0.1253)</td></tr><tr><td align="center" valign="middle" >Gend</td><td align="center" valign="middle" >B2</td><td align="center" valign="middle" >−0.1544</td><td align="center" valign="middle" >0.057</td><td align="center" valign="middle" >(−0.2684, −0.0404)</td></tr><tr><td align="center" valign="middle" >Age</td><td align="center" valign="middle" >B3</td><td align="center" valign="middle" >−3.1108</td><td align="center" valign="middle" >0.65</td><td align="center" valign="middle" >(−4.4108, −2.8108)</td></tr><tr><td align="center" valign="middle" >Ocf</td><td align="center" valign="middle" >B4</td><td align="center" valign="middle" >−0.0828</td><td align="center" valign="middle" >0.028</td><td align="center" valign="middle" >(−0.1388, −0.0268)</td></tr><tr><td align="center" valign="middle" >Edf</td><td align="center" valign="middle" >B5</td><td align="center" valign="middle" >−0.0550</td><td align="center" valign="middle" >0.011</td><td align="center" valign="middle" >(−0.077, −0.033)</td></tr><tr><td align="center" valign="middle" >Vzd6</td><td align="center" valign="middle" >B6</td><td align="center" valign="middle" >0.0715</td><td align="center" valign="middle" >0.038</td><td align="center" valign="middle" >(−0.0048, 0.1475)</td></tr><tr><td align="center" valign="middle" >Tbr</td><td align="center" valign="middle" >B7</td><td align="center" valign="middle" >−0.1446</td><td align="center" valign="middle" >0.056</td><td align="center" valign="middle" >(−0.2566, 0.0326)</td></tr><tr><td align="center" valign="middle" >Tfls</td><td align="center" valign="middle" >B8</td><td align="center" valign="middle" >0.0276</td><td align="center" valign="middle" >0.03</td><td align="center" valign="middle" >(−0.324, 0.0876)</td></tr><tr><td align="center" valign="middle" >Spacov</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x161.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" >0.23</td><td align="center" valign="middle" >0.032</td><td align="center" valign="middle" >(0.166, 0.294)</td></tr><tr><td align="center" valign="middle" >−</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x162.png" xlink:type="simple"/></inline-formula>(correlation)</td><td align="center" valign="middle" >0.58</td><td align="center" valign="middle" >0.051</td><td align="center" valign="middle" >(0.478, 0.682)</td></tr><tr><td align="center" valign="middle" >−</td><td align="center" valign="middle" >a (skewness)</td><td align="center" valign="middle" >−2.75</td><td align="center" valign="middle" >0.027</td><td align="center" valign="middle" >(−2.794, −2.696)</td></tr></tbody></table></table-wrap></sec><sec id="s4"><title>4. Assessing the Model</title><p>To check the accuracy and validity of the presented skew-normal latent variable modeling, implementing a normal- latent variable methodology in Bayesian analysis of spatially correlated binary data was considered. The parameters estimates of this model using MCMC sampling were obtained and shown in <xref ref-type="table" rid="table">Table </xref>2. The findings in this table indicates that the estimates of parameters in the two methodology are often near to each other or in the same direction, while standard errors of the estimates in the methodology using skewed normal latent variable is lower than other case. Furthermore the Bayesian information criterion (BIC) [<xref ref-type="bibr" rid="scirp.55808-ref64">64</xref>] based the<inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x163.png" xlink:type="simple"/></inline-formula>, where L, q, m and <inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x163.png" xlink:type="simple"/></inline-formula><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x164.png" xlink:type="simple"/></inline-formula> are likelihood function, number of parameter sample size and the estimated parameters, respectively, were computed for two models. For skew-normal latent model BIC = 1162036.2 and for normal latent variable model BIC = 1225318.8 were obtained. As is seen, the model using skew-normal latent variable in analysis of spatially correlated binary data is the better one.</p></sec><sec id="s5"><title>5. Discussion</title><p>In this paper, a skew-normal latent variable methodology has been developed in Bayesian analysis of the spatially correlated binary data using autologistic regression model. Parameter estimation for the autologistic model is an extremely difficult job since its likelihood function has a normalizing factor which doesn’t have a closed form [<xref ref-type="bibr" rid="scirp.55808-ref22">22</xref>] [<xref ref-type="bibr" rid="scirp.55808-ref23">23</xref>] . On the other hand, the traditional pseudo-likelihood estimation method, due to spatial dependency in data, especially when the lattice size is small, is inefficient [<xref ref-type="bibr" rid="scirp.55808-ref54">54</xref>] . Furthermore, the likelihood-based Markov chain Monte Carlo and Bayesian approaches often encounter with complicated and rigorous computations. Recently, authors such as Hughes et al. [<xref ref-type="bibr" rid="scirp.55808-ref4">4</xref>] have presented a method for easier and faster implementing the autologistic model. But with introduced excess parameters in their model, the inferential complications have not been reduced and their presented method is appropriate only for large size lattices. Also, Hossaini et al. [<xref ref-type="bibr" rid="scirp.55808-ref3">3</xref>] have researched the using of skew-normal latent variable approach in analyzing spatial data. However, they haven’t introduced the autologistic model and a covariate capturing the influences of the neighboring sites of the response variable. Moreover, in the mentioned studies only data from one lattice were investigated.</p><p>The application of the presented methodology in tooth caries analysis demonstrates that the model is well fitted and the coefficients of spatial autocovariate which involves the sum of caries statuses in neighboring teeth of a tooth, and the gingivitis around it, and the education and occupational statuses of the participant’s father, are notably different from zero. In addition, as it is evident from the result, the presented model in comparison with the normal latent variable method has a better validity and fitting indicators. So the proposed methodology is a novel way for bypassing and overcoming the intensive computational burden and complications resulting from</p><table-wrap id="table2" ><label><xref ref-type="table" rid="table">Table </xref>2</label><caption><title> Results of parameter estimations of the normal latent variable model</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Covariate</th><th align="center" valign="middle" >Parameter</th><th align="center" valign="middle" >estimate</th><th align="center" valign="middle" >Standard error</th><th align="center" valign="middle" >95% Credible interval</th></tr></thead><tr><td align="center" valign="middle" >Constant</td><td align="center" valign="middle" >B0</td><td align="center" valign="middle" >−0.786</td><td align="center" valign="middle" >0.36</td><td align="center" valign="middle" >(−1.106, −0.466)</td></tr><tr><td align="center" valign="middle" >Ginv</td><td align="center" valign="middle" >B1</td><td align="center" valign="middle" >0.151</td><td align="center" valign="middle" >0.068</td><td align="center" valign="middle" >(0.15, 0.287)</td></tr><tr><td align="center" valign="middle" >Gend</td><td align="center" valign="middle" >B2</td><td align="center" valign="middle" >0.0418</td><td align="center" valign="middle" >0.068</td><td align="center" valign="middle" >(−.0942, 0.1778)</td></tr><tr><td align="center" valign="middle" >Age</td><td align="center" valign="middle" >B3</td><td align="center" valign="middle" >0.018</td><td align="center" valign="middle" >0.016</td><td align="center" valign="middle" >(−0.014, 0.050)</td></tr><tr><td align="center" valign="middle" >Ocf</td><td align="center" valign="middle" >B4</td><td align="center" valign="middle" >−.0469</td><td align="center" valign="middle" >0.074</td><td align="center" valign="middle" >(−0.1949, 0.1011)</td></tr><tr><td align="center" valign="middle" >Edf</td><td align="center" valign="middle" >B5</td><td align="center" valign="middle" >−0.0255</td><td align="center" valign="middle" >0.072</td><td align="center" valign="middle" >(−0.1695, 0.1185)</td></tr><tr><td align="center" valign="middle" >Vzd6</td><td align="center" valign="middle" >B6</td><td align="center" valign="middle" >0.022</td><td align="center" valign="middle" >0.037</td><td align="center" valign="middle" >(−0.052, 0.096)</td></tr><tr><td align="center" valign="middle" >Tbr</td><td align="center" valign="middle" >B7</td><td align="center" valign="middle" >−0.004</td><td align="center" valign="middle" >0.093</td><td align="center" valign="middle" >(−0.19, 0.182)</td></tr><tr><td align="center" valign="middle" >Tfls</td><td align="center" valign="middle" >B8</td><td align="center" valign="middle" >0.0012</td><td align="center" valign="middle" >0.027</td><td align="center" valign="middle" >(−0.0528, 0.0552)</td></tr><tr><td align="center" valign="middle" >Spacov</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x165.png" xlink:type="simple"/></inline-formula></td><td align="center" valign="middle" >1.6</td><td align="center" valign="middle" >0.051</td><td align="center" valign="middle" >(1.57, 1.71)</td></tr><tr><td align="center" valign="middle" >−</td><td align="center" valign="middle" ><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x166.png" xlink:type="simple"/></inline-formula>(correlation)</td><td align="center" valign="middle" >0.54</td><td align="center" valign="middle" >0.046</td><td align="center" valign="middle" >(0.4, 0.48)</td></tr></tbody></table></table-wrap><p>normalizing constant of the autologistic model in analyzing spatial binary data on multiple lattices.</p><p>In conclusion, the proposed methodology based on the augmenting skew-normal latent variables in analyzing spatially correlated binary data is an adequate and appropriate model. A carious tooth in nearest neighbors of a tooth is a cause of its decay. The higher education and the income of the head of the family are the lower caries occurrences of the individual. These can be considered in oral health care and tooth caries treatment programs in the surveyed sample [<xref ref-type="bibr" rid="scirp.55808-ref65">65</xref>] .</p></sec><sec id="s6"><title>Acknowledgements</title><p>I much thank Dr Mohammad Ali Usofi, the head and associated Professor of Dentistry Faculty and miss Zainab Kazemi, the proficient and expert dentist in Immam Ali Dentistry Centre in Yasuj University of Medical Sciences, who prepared the tooth caries data.</p></sec><sec id="s7"><title>Appendix A</title><p>We have</p><disp-formula id="scirp.55808-formula811"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x167.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.55808-formula812"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x168.png"  xlink:type="simple"/></disp-formula><p>by assuming</p><disp-formula id="scirp.55808-formula813"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x169.png"  xlink:type="simple"/></disp-formula><p>then</p><disp-formula id="scirp.55808-formula814"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x170.png"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.55808-formula815"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x171.png"  xlink:type="simple"/></disp-formula><p>so</p><disp-formula id="scirp.55808-formula816"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x172.png"  xlink:type="simple"/></disp-formula><p>Following that, we have</p><p><inline-formula><inline-graphic xlink:href="http://html.scirp.org/file/5-1240403x173.png" xlink:type="simple"/></inline-formula>,</p><p>since</p><disp-formula id="scirp.55808-formula817"><graphic  xlink:href="http://html.scirp.org/file/5-1240403x174.png"  xlink:type="simple"/></disp-formula><p>so</p></sec></body><back><ref-list><title>References</title><ref id="scirp.55808-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Allard, D. and Naveau, P. 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