<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">IJOC</journal-id><journal-title-group><journal-title>International Journal of Organic Chemistry</journal-title></journal-title-group><issn pub-type="epub">2161-4687</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ijoc.2014.42014</article-id><article-id pub-id-type="publisher-id">IJOC-46241</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject><subject> Chemistry&amp;Materials Science</subject></subj-group></article-categories><title-group><article-title>
 
 
  A Modified Method for the Synthesis of Tetradentate Ligand Involving Peptide Bond
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>ulimamidi</surname><given-names>Rabindra Reddy</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Ravula</surname><given-names>Chandrashekar</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Hussain</surname><given-names>Shaik</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Battu</surname><given-names>Satyanarayana</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>Department of Chemistry, Osmania University, Hyderabad, India</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>profprreddy@gmail.com(URR)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>22</day><month>05</month><year>2014</year></pub-date><volume>04</volume><issue>02</issue><fpage>122</fpage><lpage>134</lpage><history><date date-type="received"><day>10</day>	<month>April</month>	<year>2014</year></date><date date-type="rev-recd"><day>15</day>	<month>May</month>	<year>2014</year>	</date><date date-type="accepted"><day>22</day>	<month>May</month>	<year>2014</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  In view of the importance of picolinic acid (Pa) in preventing cell growth and arresting cell cycle, attempts were made to design, synthesize and characterize two new Pa based tetradentate ligands (DPPTR and DPPTY) with a modified procedure. The procedure reported here avoids by-products and provides better yield and purity.
  
 
</p></abstract><kwd-group><kwd>Amide Bond Formation</kwd><kwd> Tetradentate Ligand</kwd><kwd> Peptide Bond</kwd><kwd> Coupling Reagent</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Synthesis of ligands with peptide bond has attracted lot of attention due to their importance in biological systems. Many reagents were used to get the desired peptides [<xref ref-type="bibr" rid="scirp.46241-ref1">1</xref>] -[<xref ref-type="bibr" rid="scirp.46241-ref5">5</xref>] . Among them DCC (N,N’-dicyclohexylcarbodii- mide), EDCI (3-(Ethyliminomethyleneamino)-N,N-dimethylpropan-1-amine), HOBT (1-Hydroxybenzotriazole) and HATU (1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate) were extensively used [<xref ref-type="bibr" rid="scirp.46241-ref6">6</xref>] -[<xref ref-type="bibr" rid="scirp.46241-ref11">11</xref>] . However, with DCC and EDCI-HOBT, there is a possibility of by-product for- mation, reduction in the yield and makes purification difficult. With DCC, multiple by-products like anhydride, urea and N-acylurea were formed [<xref ref-type="bibr" rid="scirp.46241-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.46241-ref13">13</xref>] . To avoid this HATU was used earlier for the synthesis of simple peptides [<xref ref-type="bibr" rid="scirp.46241-ref14">14</xref>] [<xref ref-type="bibr" rid="scirp.46241-ref15">15</xref>] . In view of this, We adopted a modified procedure employing HATU and DIEA (N,N-Diiso- propylethylamine) for the synthesis of tetradentate ligand involving peptide bond. The base (DIEA) has an ad- vantage due to the presence of an isopropyl group which helps in increasing the basicity on N-atom and facili- tates the proton abstraction from the acid. Since Pa and their derivatives are known to prevent the cell growth and arrest the cell cycle [<xref ref-type="bibr" rid="scirp.46241-ref16">16</xref>] , it was thought important to design, synthesize and characterize two new Picolinic acid based tetradentate ligands, N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridine-2-yl methylamino)propan-2-yl) picoli- namide (DPPTR) and N-3-(4-hydroxyphenyl)-1-oxo-1-(pyridine-2-ylmethylamino) propan-2-yl) picolinamide (DPPTY) using HATU and DIEA. The synthesis of ligands involves three steps (Scheme 1). The intermediates and final ligands were isolated and characterized. The results show that the yields for the intermediates are &gt;90% and for final ligands &gt; 80% with good purity.</p></sec><sec id="s2"><title>2. Results and Discussion</title><sec id="s2_1"><title>2.1. DPTR-I/DPTY-I</title><p>The ESI-Mass spectra of DPTR-I (<xref ref-type="fig" rid="fig1">Figure 1</xref>) shows m/z peak at 324 indicating that the DPTR-I molecular ion species appeared as [M + H]<sup>+</sup> and for DPTY-I (<xref ref-type="fig" rid="fig2">Figure 2</xref>, (Suppl Material, SM)) the mass spectra shows a peak at 301 specifying that the DPTY-I molecular ion species also appeared as [M + H]<sup>+</sup>. The M.ps 130˚C - 133˚C for DPTR-I and 128˚C - 131˚C for DPTY-I.</p><p><sup>1</sup>H-NMR spectra of DPTR-I/DPTY-I</p><p>DPTR-I (<xref ref-type="fig" rid="fig3">Figure 3</xref>): <sup>1</sup>H-NMR (400 MHz, CD<sub>3</sub>OH): δ = 10.02 (s, 1H) 7.94 (d, 1H), 7.74 (d, 1H), 7.14 - 7.12 (m, 2H), 6.75 - 6.72 (m, 1H), 6.61 (d, 1H), 6.48 - 6.44 (m, 1H), 6.29 (d, 1H), 6.21 - 6.16 (m, 1H), 6.13 - 6.05 (m, 1H), 2.77 (s, 3H), 2.72 (brs, 1H), 1.65 - 1.62 (m, 2H) [<xref ref-type="bibr" rid="scirp.46241-ref17">17</xref>] [<xref ref-type="bibr" rid="scirp.46241-ref18">18</xref>] .</p><p>DPTY-I (<xref ref-type="fig" rid="fig4">Figure 4</xref>, SM): <sup>1</sup>H-NMR (400 MHz, DMSO-d6): δ = 9.24 (s, 1H), 8.80 (d, 1H), 8.65 (d, 1H), 7.99 (t, 1H), 7.98 (d, 1H), 7.63 - 7.60 (m, 1H), 7.00 (d, 2H), 6.63 (d, 2H), 4.73 - 4.68 (m, 1H), 3.64 (S, 3H), 3.09 (d, 2H).</p><fig id="fig1"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref></label><caption><title> ESI-Mass spectra of DPTR-I</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x8.png"/></fig><fig id="fig2"  position="float"><label><xref ref-type="fig" rid="fig2">Figure 2</xref></label><caption><title> ESI-Mass spectra of DPTY-I</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x9.png"/></fig><fig id="fig3"  position="float"><label><xref ref-type="fig" rid="fig3">Figure 3</xref></label><caption><title> <sup>1</sup>H-NMR spectra of DPTR-I</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x10.png"/></fig><fig id="fig4"  position="float"><label><xref ref-type="fig" rid="fig4">Figure 4</xref></label><caption><title> <sup>1</sup>H-NMR spectra of DPTY-I</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x11.png"/></fig><p>The mechanism involves,</p><p>1) Proton abstraction occurs from Pa followed by the addition of carboxylate anion (-Coo<sup>−</sup>) to the electron de- ficient carbon atom of HATU. This results in the formation of new C-O bond.</p><p>2) The resulting anion reacts with the newly formed activated carboxylic acid derived from intermediate to form an OBt activated ester.</p><p>3) The amine reacts with the OBt activated ester to form the amide product.</p><p>Similar mechanism was proposed earlier for the formation of amide bond [<xref ref-type="bibr" rid="scirp.46241-ref19">19</xref>] -[<xref ref-type="bibr" rid="scirp.46241-ref21">21</xref>] .</p></sec><sec id="s2_2"><title>2.2. DPTR-II/DPTY-II</title><p>The ESI-Mass spectra of DPTR-II (<xref ref-type="fig" rid="fig5">Figure 5</xref>) shows m/z peak at 315 suggesting that the DPTR-II molecular ion species appeared as [M + Li]<sup>+</sup> and for DPTY-II (<xref ref-type="fig" rid="fig6">Figure 6</xref>, SM) the mass spectra shows a peak at 287 indicating that the DPTY-II molecular ion species appeared as [M + H]<sup>+</sup>. The M.ps 131˚C - 134˚C for DPTR-II and 129˚C - 132˚C for DPTY-II.</p><p><sup>1</sup>H-NMR spectra of DPTR-II/DPTY-II</p><p>DPTR-II (<xref ref-type="fig" rid="fig7">Figure 7</xref>): <sup>1</sup>HNMR (400 MHz, DMSO-d<sub>6</sub>): δ = 9.88 (s, 1H), 7.67 (d, 1H), 7.19 - 7.08 (m, 3H), 6.69 - 6.66 (m, 1H), 6.58 (d, 1H), 6.37 (d, 1H), 6.19 (d, 1H), 6.09 - 6.05 (m, 1H), 5.93 - 5.89 (m, 1H), 3.40 - 3.38 (m, 1H), 2.37 - 2.32 (m, 2H).</p><p>DPTY-II (<xref ref-type="fig" rid="fig8">Figure 8</xref>, SM): 1H-NMR (400 MHz, DMSO-d6): δ = 9.22 (s, 1H), 8.65 - 8.60 (m, 2H), 8.01 - 7.98 (m, 2H), 7.62 (d, 1H), 6.99 (d, 2H), 6.22 (d, 2H), 4.67 - 4.62 (m, 1H), 3.08 (d, 2H).</p><p>IR spectra of DPTR-II/DPTY-II</p><p>The IR spectra for the above intermediates were recorded to confirm the presence of acidic proton (COOH functional group).</p><p>DPTR-II (<xref ref-type="fig" rid="fig9">Figure 9</xref>): IR υ<sub>max</sub> (MeOH): 3323 (CONH), 3098 (COOH), 1625 (C=O), 1516 (C=C) 1437 (C=N), 1245 (C-N) cm<sup>−</sup><sup>1</sup> [<xref ref-type="bibr" rid="scirp.46241-ref22">22</xref>] .</p><p>DPTY-II (<xref ref-type="fig" rid="fig1">Figure 1</xref>0, SM); IR υ<sub>max</sub> (MeOH): 3330 (CONH), 2956 (COOH), 1739 (C=O), 1439 (C=C), 1367 (C=N), 1218 (C-N) cm<sup>−</sup><sup>1</sup>.</p><p>The general mechanism for the de-esterification by base involves a series of equilibria. The hydroxide anion adds to the carbonyl group of the ester. The direct products are a carboxylic acid salt and an alcohol. To convert the salt to the corresponding carboxylic acid, acidic workup of the product mixture was performed [<xref ref-type="bibr" rid="scirp.46241-ref23">23</xref>] .</p></sec><sec id="s2_3"><title>2.3. Final Ligands: DPPTR/DPPTY</title><p>The ESI-Mass spectra of DPPTR-(<xref ref-type="fig" rid="fig1">Figure 1</xref>1) shows m/z peak at 400 indicating that the DPPTR molecular ion species appeared as [M + H]<sup>+</sup> and for DPPTY (<xref ref-type="fig" rid="fig1">Figure 1</xref>2, SM) the mass spectra shows a peak at 377 suggesting that the DPPTY molecular ion species appeared as [M + H]<sup>+</sup>. The M.ps 136˚C - 138˚C for DPPTR and 133˚C - 135˚C for DPPTY.</p><p><sup>1</sup>H-NMR spectra of DPPTR/DPPTY</p><p>DPPTR (<xref ref-type="fig" rid="fig1">Figure 1</xref>3); 1H-NMR (400 MHz, DMSO-d6): δ = 10.68 (s, 1H), 9.82 (d, 2H), 8.59 - 8.50 (m, 1H),</p><fig id="fig5"  position="float"><label><xref ref-type="fig" rid="fig5">Figure 5</xref></label><caption><title> ESI-Mass spectra of DPTR-II</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x13.png"/></fig><fig id="fig6"  position="float"><label><xref ref-type="fig" rid="fig6">Figure 6</xref></label><caption><title> ESI-Mass spectra of DPTY-II</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x14.png"/></fig><fig id="fig7"  position="float"><label><xref ref-type="fig" rid="fig7">Figure 7</xref></label><caption><title> <sup>1</sup>H-NMR spectra of DPTR-II</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x15.png"/></fig><fig id="fig8"  position="float"><label><xref ref-type="fig" rid="fig8">Figure 8</xref></label><caption><title> <sup>1</sup>H-NMR spectra of DPTY-II</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x16.png"/></fig><fig id="fig9"  position="float"><label><xref ref-type="fig" rid="fig9">Figure 9</xref></label><caption><title> Infrared spectra of DPTR-II</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x17.png"/></fig><fig id="fig10"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>0</label><caption><title> Infrared spectra of DPTY-II</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x18.png"/></fig><fig id="fig11"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>1</label><caption><title> ESI-Mass spectra of DPPTR</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x19.png"/></fig><fig id="fig12"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>2</label><caption><title> ESI-Mass spectra of DPPTY</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x20.png"/></fig><fig id="fig13"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>3</label><caption><title> <sup>1</sup>H-NMR spectra of DPPTR</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x21.png"/></fig><p>8.26 - 8.14 (m, 2H), 7.91 - 7.85 (m, 2H), 7.74 - 7.67 (m, 2H), 7.59 (s, 1H), 7.50 - 7.31 (m, 2H), 7.23 - 7.08 (m, 1H), 7.01 - 6.99 (m, 1H), 4.95 (d, 3H), 4.37 (d, 1H), 2.50 - 2.47 (m, 1H), 2.36 - 2.31 (m, 1H)</p><p>DPPTY (<xref ref-type="fig" rid="fig1">Figure 1</xref>4, SM); 1-HNMR (400 MHz, DMSO-d<sub>6</sub>): δ = 8.82 (t, 1H), 8.65 (t, 2H), 8.48 (d, 1H), 8.02 (d, 2H), 7.75 (t, 1H), 7.62 - 7.59 (m, 1H), 7.25 (t, 1H), 7.10 (d, 1H), 7.00 (d, 2H), 6.60 (d, 2H), 4.79 - 4.74 (m, 1H), 4.43 - 4.34 (m, 2H), 3.06 - 2.99 (m, 2H).</p><p>IR spectra of DPPTR/DPPTY</p><p>DPPTR (<xref ref-type="fig" rid="fig1">Figure 1</xref>5): IR υ<sub>max</sub> (MeOH): 3307 (CONH), 1660 (C=O), 1516 cm<sup>−</sup><sup>1</sup> (C=C), 1478 (C=N), 1232 (C-N) cm<sup>−</sup><sup>1</sup>.</p><p>DPPTY (<xref ref-type="fig" rid="fig1">Figure 1</xref>6, SM): IR υ<sub>max</sub> (MeOH): 3323 (CONH), 1741 (C=O), 1371 (C=C), 1443 (C=N), 1224 (C-N) cm<sup>−</sup><sup>1</sup>.</p><fig id="fig14"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>4</label><caption><title> <sup>1</sup>H-NMR spectra of DPPTY</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x22.png"/></fig><fig id="fig15"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>5</label><caption><title> Infrared spectra of DPPTR</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x23.png"/></fig><fig id="fig16"  position="float"><label><xref ref-type="fig" rid="fig1">Figure 1</xref>6</label><caption><title> Infrared spectra of DPPTY</title></caption><graphic mimetype="image"   position="float"  xlink:type="simple"  xlink:href="http://html.scirp.org/file/4-1020271x24.png"/></fig><p>The mechanism for the formation of final ligands is similar to that described for the formation of DPTR-I/ DPTY-I except that the starting materials are different.</p></sec></sec><sec id="s3"><title>3. Conclusion</title><p>Two new tetradentate ligands involving peptide bond were synthesized with a modified procedure and characte- rized. The procedure is simple and avoids by-products and results in better yields. Since small molecular bio-li- gands containing peptide bond are known to play an important role as biomimetics, construction of such mimics can lead to a better understanding of the biological complexity at a molecular level. Therefore, the procedure described here will provide an opportunity to synthesize new small molecules.</p></sec><sec id="s4"><title>4. Experimental Section</title><sec id="s4_1"><title>4.1. Material and Methods</title><p>Picolinic acid, Tryptophan-methyl ester, Tyrosine-methyl ester, picolylamine and LiOH∙H<sub>2</sub>O are obtained from sigma chemical company (99% purity), USA. HATU and solvents (DIEA, methanol, Ethylacetate, n-Hexane and dimethylformamide) were purchased from Merck, India and were of analar grade. The chemicals were used as supplied. The TLC silica gel plates (60 F<sub>254</sub>) were obtained from Merck. Infrared spectra were recorded on a Perkin-Elmer FT-IR spectrometer in the range of 4000 - 750 cm<sup>−</sup><sup>1</sup> using Methanol as solvent. ESI mass spectra for the ligands were recorded on a Quattro Lc (Micro mass, Manchester, UK) triple quadruple mass spectrome- ter with Mass Lynx software and Shimadzu, model LC-MS; 8030. The <sup>1</sup>H-NMR spectra were recorded on a Bruker Biospin and Avance-III 400 MHz Fourier Transform Digital NMR Spectrometer, Switzerland using DMSO as solvent and TMS as the internal standard. The melting points were recorded on a cintex melting point instrument and are uncorrected. All reactions were carried under N<sub>2</sub> atmosphere.</p></sec><sec id="s4_2"><title>4.2. Synthesis of Peptides</title><p>The synthesis of peptides involves three steps (Scheme 1). The following procedure was adopted for the synthe- sis.</p><p>DPPTR:</p><p>For the synthesis of DPPTR, 2-picolinic acid (0.2 g, 1.62 mmol) was dissolved in dry DMF (10 mL) and HATU (0.74 g, 1.95 mmol) and DIEA (0.62 g, 4.86 mmol) were added. The solution was cooled to 0˚C. The solution was stirred for 30 min followed by the addition of Tryptophan-methyl ester (0.62 g, 2.43 mmol). The mixture was warmed to room temperature and the stirring continued for another 12 h. After the workup, the sol- vent was removed under reduced pressure and the remaining solid was washed with petroleum ether to afford the compound, DPTR-I (yield: 0.481 g, 93%). In the second step, the protected methyl ester (OMe) was re- moved by saponification using LiOH in MeOH to get DPTR-II. It was purified by column chromatography (yield: 0.419 g, 91%). Finally, DPTR-II (0.42 g, 1.35 mmol) was dissolved in dry DMF (10 ml) and HATU (0.61 g, 1.62 mmol) and DIEA (0.52 g, 4.05 mmol) were added and the mixture was cooled to 0˚C. The solution was stirred for 30 min and the picolylamine (0.22 g, 2.03 mmol) was added. The mixture was warmed to room temperature and stirred for another 12 h. After the workup, the solvent was removed under reduced pressure. The residue was purified by column chromatography on silica gel (eluent: hexane/ethyl acetate) to afford the compound DPPTR (yield: 0.459 g, 85%). The DPPTY was synthesized as per the procedure described in SM.</p></sec></sec><sec id="s5"><title>Acknowledgements</title><p>The financial support from the Council of Scientific and Industrial Research (01/2569/12-EMR-II) and Univer- sity Grants Commission (41-286/2012-SR), Govt. of India is gratefully acknowledged.</p></sec><sec id="s6"><title>NOTES</title></sec></body><back><ref-list><title>References</title><ref id="scirp.46241-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Han, S.-Y. and Kim, Y.-A. (2004) Recent Development of Peptide Coupling Reagents in Organic Synthesis. Tetrahedron, 60, 2447-2467. http://dx.doi.org/10.1016/j.tet.2004.01.020</mixed-citation></ref><ref id="scirp.46241-ref2"><label>2</label><mixed-citation publication-type="other" xlink:type="simple">Al berico, F. (2004) Developments in Peptide and Amide Synthesis. 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