<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">JCPT</journal-id><journal-title-group><journal-title>Journal of Crystallization Process and Technology</journal-title></journal-title-group><issn pub-type="epub">2161-7678</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/jcpt.2013.32011</article-id><article-id pub-id-type="publisher-id">JCPT-30894</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Chemistry&amp;Materials Science</subject></subj-group></article-categories><title-group><article-title>
 
 
  Synthesis, Crystal Structure and Antimicrobial Activity of (E)-ethyl-4-(2-oxoacenaphthylen-1(2&lt;i&gt;H&lt;/i&gt;)-ylideneamino) benzoate
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>i-Chen</surname><given-names>Chan</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Abdussalam</surname><given-names>Salhin Mohamed Ali</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Melati</surname><given-names>Khairuddean</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Baharuddin</surname><given-names>Salleh</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib></contrib-group><aff id="aff2"><addr-line>School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia</addr-line></aff><aff id="aff1"><addr-line>School of Chemical Sciences, Universiti Sains Malaysia, Penang, Malaysia</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>abdussalam@usm.my(ASMA)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>30</day><month>04</month><year>2013</year></pub-date><volume>03</volume><issue>02</issue><fpage>69</fpage><lpage>73</lpage><history><date date-type="received"><day>March</day>	<month>3rd,</month>	<year>2013</year></date><date date-type="rev-recd"><day>April</day>	<month>5th,</month>	<year>2013</year>	</date><date date-type="accepted"><day>April</day>	<month>15th,</month>	<year>2013</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
   A Schiff base, (E)-ethyl-4-(2-oxoacenaphthylen-1(2H)-ylideneamino)benzoate, (E4AB) had been synthesized in good yield by the acid-catalyzed condensation reaction of acenaphthenequinone and ethyl-4-aminobenzoate in methanolic solution. The synthesized compound was elucidated by elemental analysis (CHN), FTIR, <sup>1</sup>H-NMR, <sup>13</sup>C-NMR and single crystal X-ray diffraction. E4AB crystallized in the monoclinic crystal system with space group P2<sub>1</sub>/c, Z = 4, V = 1569.3(2) ?<sup>3</sup> and unit cell parameters a = 9.1589(8) , b = 21.2003(17)?, c =8.4502(7) ?, β= 106.972(2)&#176;. The crystal structure of the compound is stabilized by intermolecular C-H&#183;&#183;&#183;O hydrogen bonds and weak intermolecular π&#183;&#183;&#183;π interactions. The title compound had been tested for the antimicrobial activity against Bacillus subtilis (B. subtilis), Enterobacter and Fusarium oxysporum f. sp. Cubense (Foc) by disc-diffusion method. E4AB is relatively active against Foc which is a pathogen that cause Wilt disease (also well known as Panama disease) in banana plantation.  
 
</p></abstract><kwd-group><kwd>Schiff Base; Acenaphthenequinone; Ethyl-4-aminobenzoate; Antimicrobial; Panama Disease</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Schiff base was first prepared by Hugo Schiff in 1864 [<xref ref-type="bibr" rid="scirp.30894-ref1">1</xref>]. Schiff bases are nitrogen analogues of aldehydes and ketones, having a carbon-nitrogen double bond in place of the carbonyl group [<xref ref-type="bibr" rid="scirp.30894-ref2">2</xref>]. Their formations constitute part of the broad class of condensation reaction. Schiff bases have been playing a pivotal role in the development of coordination chemistry and bioorganic chemistry with the acenaphthenequinone-based Schiff bases are widely synthesized due to their potential applications in various scientific areas [3-7].</p><p>Azomethines of acenaphthenequinone were found to have antimicrobial activities where El-Ayaan et al. [<xref ref-type="bibr" rid="scirp.30894-ref8">8</xref>] had reported that bis[N-(2,6-diisopropylphenyl)imino] acenaphthene was active against S. aureus, E. coli and C. albicans. Many of these microorganisms are pathogenic to animals and plants. B. subtilis and Enterobacter had been suggested to be associated with the sick building syndrome such as eye irritation, asthma, and throat infection among the building occupants [9-10] while Panama disease caused by Fusarium oxysporum f. sp. cubense (Foc) is regarded as one of the most dreadful disease threatening the banana production worldwide [<xref ref-type="bibr" rid="scirp.30894-ref11">11</xref>]. Hence, in this paper we report the synthesis and characterization of (E)-ethyl-4-(2-oxoacenaphthylen-1(2H)-ylideneamino)benzoate, (E4AB) and the antimicrobial activity of the title compound against B. subtilis, Enterobacter and Foc.</p></sec><sec id="s2"><title>2. Experimental</title><p>In the preparation of E4AB, all the reagents were used as received. Melting point was determined by Stuart Scientific (UK) apparatus. Elemental analysis (CHN) was carried out on a Perkin Elmer Series II, 2400 analyzer. IR spectrum was recorded as KBr pellets on a Perkin Elmer System 2000 FT-IR spectrophotometer in the wavenumber range of 4000 - 400 cm<sup>−1</sup>. NMR spectra were recorded on a Bruker Avance III 500 MHz spectrometer in DMSO-d<sub>6 </sub>using tetramethylsilane as an internal standard.</p><sec id="s2_1"><title>2.1. Synthesis of E4AB</title><p>Acenaphthenequinone (0.182 g, 1 mmol), ethyl-4-aminobenzoate (0.165 g, 1 mmol) and 30.0 mL of methanol were placed in 100 mL round bottom flask. The mixture was allowed to heat under reflux for overnight in the presence of formic acid. The solvent was removed to give the crude compound. Single crystal suitable for Xray crystallography was obtained after recrystallization from ethanol. Yield: 73%. m.p.: 211˚C - 212˚C. Anal. Calcd for C<sub>21</sub>H<sub>15</sub>NO<sub>3</sub>: C 76.60, H 4.56, N 4.26%; found: C 76.94, H 4.33, N 4.38%. Main IR bands (KBr, cm<sup>−1</sup>): 2983 (w), 1729 (m), 1702 (s), 1666 (m), 1600 (s), 1275 (s), 1237 (m), 1107 (m), 1014 (m), 781 (m).<sup> 1</sup>H-NMR 500 MHz, (DMSO-d<sub>6</sub>, ppm): δ 1.37 (3H, t, CH<sub>3</sub>), 4.36 (2H, q, CH<sub>2</sub>), 6.79 (1H, d, H8), 7.22 (2H, d, H14), 7.59 (1H, t, H7), 7.93 (1H, t, H3), 8.11 (2H, d, H15), 8.16 (1H, d, H2), 8.22 (1H, d, H6), 8.39 (1H, d, H4). <sup>13</sup>C-NMR (ppm): δ 14.21, 60.67, 117.77, 121.94, 123.19, 126.19, 126.39, 128.45, 128.62, 129.83, 130.15, 130.66, 130.90, 132.41, 142.68, 154. 98, 158.96 (C=N), 165.39 (C=O), 188.32 (C=O).</p></sec><sec id="s2_2"><title>2.2. Crystal Structure Determination</title><p>Crystal data was collected using Bruker APEXII DUO area-detector diffractometer with graphite monochromated MoKα radiation at a detector distance of 50 mm and collected under 100 K using Oxford Cryosystem Cobra low temperature attachement [<xref ref-type="bibr" rid="scirp.30894-ref12">12</xref>]. The cell refinement and data reduction were performed using SAINT program [<xref ref-type="bibr" rid="scirp.30894-ref13">13</xref>] and the empirical absorption correction was performed using the SADABS program [<xref ref-type="bibr" rid="scirp.30894-ref13">13</xref>]. The structure was solved by direct methods and refined by leastsquares using SHLEXTL software package [<xref ref-type="bibr" rid="scirp.30894-ref14">14</xref>]. All non-hydrogen atoms were refined anisotropically. All hydrogen atoms were placed in idealized position, and refined using a riding model. The details of the crystal data and structure refinements are given in <xref ref-type="table" rid="table1">Table 1</xref>.</p></sec><sec id="s2_3"><title>2.3. Antimicrobial Activity Determination</title><p>E4AB was tested for the antibacterial activity against B. subtilis and Enterobacter by slight modification of the disc-diffusion method described by Murray et al. [<xref ref-type="bibr" rid="scirp.30894-ref15">15</xref>]. 0.1 mL of 10<sup>8</sup> CFU/mL of bacteria suspension was streaked evenly onto the agar containing Petri plate. The plate was then allowed to air dry in laminar flow. E4AB was dissolved in DMSO to get 1000, 500 and 250 &#181;g/mL concentrations of the compound. Four sterilized filter paper discs (diameter 7 mm) were placed at four equidistant places on the inoculated plate. 20 &#181;L of each concentration of the compound was spiked on the disc accordingly by using micropipette. Filter paper disc treated with DMSO was served as the control in the test. Lastly, the inoculated plate was allowed to air dry and incubated under room temperature (25˚C &#177; 2˚C) for 48 hours before the inhibition zone was recorded in diameter (mm). Each test was conducted in triplicate. In the</p><p><xref ref-type="table" rid="table1">Table 1</xref>. Crystal data, data collection and refinement parameters of E4AB.</p><p><img src="5-1010075\5dc76b07-71af-48ab-9d47-e6410585e220.jpg" /></p><p>antifungal activity against Foc the same method as described for antibacterial activity was applied except for the amount of fungal suspension and incubation period used which were 1 mL of 1 &#215; 10<sup>4</sup> spore/mL suspension and seven days, respectively.</p></sec></sec><sec id="s3"><title>3. Results and Discussion</title><sec id="s3_1"><title>3.1. Description of the Crystal Structure</title><p>In E4AB (<xref ref-type="fig" rid="fig1">Figure 1</xref>), the acenaphthylenone moiety is essentially planar, with atom C10 deviates from the mean plane formed by a maximum deviation of −0.057(1) &#197;. Nevertheless, the whole molecule is not planar, as indicated by the dihedral angle between the mean planes through the acenaphthylenone moiety and phenyl ring being 74.44(3)˚. The ethyl formate group is slightly inclined at a dihedral angle of 12.01(5)˚ with respect to the attached phenyl ring. In the crystal packing (<xref ref-type="fig" rid="fig2">Figure 2</xref>), adjacent molecules are interconnected into one-dimensional hydrogen-bonded chains propagating along the a axis via intermolecular C-H<img src="5-1010075\be716949-30ab-4ced-8b95-3a7a6f5e5be7.jpg" />O hydrogen bonds</p><p>[C<img src="5-1010075\48cfd7a7-c067-47dd-b419-f7d1618377a5.jpg" />O distance of 3.4010(11) &#197;]. Further stabilization of the crystal packing is provided by weak intermolecular π<img src="5-1010075\7d292c0b-9b77-4f25-9a1e-281b92a59d52.jpg" />π aromatic stacking interactions [centroid-centroid distance of 3.7102(6) &#197;] involving the C5-C10 phenyl ring. The selected bond lengths and bond angles are given in <xref ref-type="table" rid="table2">Table 2</xref>.</p></sec><sec id="s3_2"><title>3.2. FT-IR Spectrum</title><p>E4AB displays two stretching bands at 1729 and 1702 cm<sup>−1</sup> which are corresponded to the C=O stretching vi</p><p><xref ref-type="table" rid="table2">Table 2</xref>. Selected bond angles (˚) and bond lengths (&#197;) of E4AB.</p><p><img src="5-1010075\95836f27-d62f-4fc6-b572-9d5e514198b6.jpg" /></p><p>brations of the ester and the ketone, respectively [<xref ref-type="bibr" rid="scirp.30894-ref16">16</xref>]. Meanwhile the ν (C=N) band is assigned to an absorption at 1666 cm<sup>−1</sup> [<xref ref-type="bibr" rid="scirp.30894-ref17">17</xref>]. The characteristic aromatic ring C=C stretching frequency is observed at 1600 cm<sup>−1</sup> [<xref ref-type="bibr" rid="scirp.30894-ref2">2</xref>]. In the IR spectrum of E4AB, the C-H stretch of sp<sup>3</sup> hybrid carbon atom appears at 2983 cm<sup>−1</sup>.</p></sec><sec id="s3_3"><title>3.3. <sup>1</sup>H-NMR Spectroscopy</title><p><sup>1</sup>H-NMR spectrum of E4AB is shown in <xref ref-type="fig" rid="fig3">Figure 3</xref>. A triplet at δ 1.37 ppm and a quartet at δ 4.36 ppm are assigned to H19 and H18, respectively. H8 which is ortho magnetically coupled to H7 appears as a doublet at δ 6.79 ppm with a coupling constant of 7.5 Hz. Meanwhile the doublet at δ 7.22 ppm is attributed to H14 which is coupled to H15 (δ 8.11 ppm). H7 and H3 are observed as triplets at δ 7.59 and 7.93 ppm, respectively. H7 is coupled to H8 and H6 while H3 is coupled to H2 and H4</p><p>where H2, H4 and H6 are assigned to doublets at δ 8.16, 8.39 and 8.22 ppm, respectively. The assignment of naphthalene protons to the corresponding signals are in agreement with the previously reported observations by Wang et al. [<xref ref-type="bibr" rid="scirp.30894-ref18">18</xref>] and Yang et al. [<xref ref-type="bibr" rid="scirp.30894-ref19">19</xref>].</p></sec><sec id="s3_4"><title>3.4. Antimicrobial Activity</title><p>The antimicrobial activity of the title compound in DMSO solution was assayed against two bacteria and one fungus by disc-diffusion method employing 1000, 500 and 250 &#181;g/mL concentrations of the compound. The effectiveness of an antimicrobial agent in sensitivity testing is based on the size of zone of inhibition. The diameter of the zone is measured to the nearest millimeter. The result (<xref ref-type="table" rid="table3">Table 3</xref>) shows that at higher concentration, the Gram-negative bacterium (Enterobacter) is more sensitive towards E4AB than the Gram-positive bacterium (B. subtilis). E4AB also exhibits relatively potent inhibitory activity against Foc.</p></sec></sec><sec id="s4"><title>4. Conclusion</title><p>(E)-ethyl-4-(2-oxoacenaphthylen-1(2H)-ylideneamino)benzoate, E4AB had been synthesized in good yield. Melting point determination was performed to check the purity of the compound. Results obtained from the elemen</p><p><xref ref-type="table" rid="table3">Table 3</xref>. Antimicrobial activity of E4AB.</p><p><img src="5-1010075\0e4e7267-1f85-49a9-bfa0-4a49d057e0cd.jpg" /></p><p>NA = not active tal, spectral (FTIR, NMR) and X-ray crystallography had confirmed the proposed structure of the title compound. E4AB was found to be able to inhibit B. subtilis, Enterobacter and Foc.</p></sec><sec id="s5"><title>5. 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