<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">IJMNTA</journal-id><journal-title-group><journal-title>International Journal of Modern Nonlinear Theory and Application</journal-title></journal-title-group><issn pub-type="epub">2167-9479</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ijmnta.2013.21A009</article-id><article-id pub-id-type="publisher-id">IJMNTA-29407</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Engineering</subject><subject> Physics&amp;Mathematics</subject></subj-group></article-categories><title-group><article-title>
 
 
  Branch Dynamics: A Theoretical Interpretation of Natural Phenomena
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>red</surname><given-names>Y. Ye</given-names></name><xref ref-type="aff" rid="aff1"><sub>1</sub></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>School of Information Management, Nanjing University, Nanjing, China</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>yye@nju.edu.cn</email></corresp></author-notes><pub-date pub-type="epub"><day>29</day><month>03</month><year>2013</year></pub-date><volume>02</volume><issue>01</issue><fpage>74</fpage><lpage>77</lpage><history><date date-type="received"><day>October</day>	<month>27,</month>	<year>2012</year></date><date date-type="rev-recd"><day>December</day>	<month>10,</month>	<year>2012</year>	</date><date date-type="accepted"><day>December</day>	<month>21,</month>	<year>2013</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
   
   The mechanism of natural branching is explored, which is characterized by branch dynamics, where interior dynamics and exterior dynamics reveal the unified mechanism of physical and biological phenomena. While interior dynamics is characterized by gene-interaction, gene-interchange and gene-interpretation via the quaternion mathematical processes of Cayley-Dickson branching, Grassman branching and Euclidian branching, exterior dynamics is characterized by multi-vector physical unification. Everything in the world is linked by branches, and the dynamic mechanism of the branching phenomena is approached by branch dynamics. 
  
 
</p></abstract><kwd-group><kwd>Branch; Branch Dynamics; Gene Dynamics; Quaternion Physics; Natural Mechanism</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>The phenomenon of branching is omnipresent in our world. We can see branches anywhere, whether in the cosmos or in bio-organisms, in mountains, rivers, trees, fingers and blood vessels. Everything develops with branches. Branching is a general natural process in the world, reflecting the unity of the nature. So, branches should be brought into our thinking about physical reality [<xref ref-type="bibr" rid="scirp.29407-ref1">1</xref>].</p><p>Let us begin with quaternion and multi-vector mathematical methodology for describing branches.</p></sec><sec id="s2"><title>2. Mathematical Foundations and the Structure of Branches</title><p>When we choose a quaternion basis {1, i, j, k}, there are</p><p><img src="2-2340040\c74269fb-ad48-413e-ab8b-bcdee83961b4.jpg" /></p><p>and</p><p><img src="2-2340040\53c61c8b-3f32-459b-85da-fe7a65cae67d.jpg" />.</p><p>Then a quaternion q is denoted by</p><disp-formula id="scirp.29407-formula55426"><label>(1)</label><graphic position="anchor" xlink:href="2-2340040\d7997a28-7388-4778-84b6-b12634381b75.jpg"  xlink:type="simple"/></disp-formula><p>Equation (1) can also be written as the form of dual complexes</p><disp-formula id="scirp.29407-formula55427"><label>(2)</label><graphic position="anchor" xlink:href="2-2340040\80f7bb18-a371-4fb2-9590-2cf77b9904f5.jpg"  xlink:type="simple"/></disp-formula><p>when we introduce a scalar function <img src="2-2340040\138763d5-0984-4d91-b980-b7a571ac0983.jpg" /> and a vector function<img src="2-2340040\bbdc06cf-14d9-4d3a-bcfe-29c458fd385d.jpg" />, Equation (1) can be also recorded as a scalar-vector construction of quaternion</p><disp-formula id="scirp.29407-formula55428"><label>(3)</label><graphic position="anchor" xlink:href="2-2340040\c6101670-c63a-41d9-b75d-10dd0773fd1e.jpg"  xlink:type="simple"/></disp-formula><p>And when we record Equation (1.4) as</p><disp-formula id="scirp.29407-formula55429"><label>(4)</label><graphic position="anchor" xlink:href="2-2340040\545ca3f4-0a05-4c62-9fed-e89ebd169062.jpg"  xlink:type="simple"/></disp-formula><p>it is a Cayley-Dickson construction [<xref ref-type="bibr" rid="scirp.29407-ref2">2</xref>].</p><p>So, there exist scalar-vector branching and CayleyDickson branching in quaternion and we can call the branches a Hamilton representation of a quaternion, which guides us into the branch world.</p><p>Meanwhile, there is multi-vector M<sub>k</sub> (k = 0, 1, 2, 3, 4), where M<sub>k</sub> is a multi-vector of grade k. k = 0 is scalar, k = 1 vector, k = 2 bivector, k = 3 pseudovector and k = 4 pseudoscalar [3-5] as</p><disp-formula id="scirp.29407-formula55430"><label>(5)</label><graphic position="anchor" xlink:href="2-2340040\51814868-c430-4a2e-96a1-f17bab8a91d4.jpg"  xlink:type="simple"/></disp-formula><p>in which Ψ = <sup>φ</sup> – iθ constructs a complex wave function of matter, while A = V – iU forms a complex vector function of matter particles in space-time and F maintains a bivector as interaction. Equation (5) means that matter combines wave function and vector function with their interaction, which is an image fitting the duality of waveparticle, within the concept of combining mass and energy as matter.</p><p>The conjuncture of M is</p><disp-formula id="scirp.29407-formula55431"><label>(6)</label><graphic position="anchor" xlink:href="2-2340040\0ca4b07f-cb04-46f7-b2ba-2c041ac895ef.jpg"  xlink:type="simple"/></disp-formula><p>M can be divided into two parts, even M, M<sub>+</sub>, as left M, M<sub>L</sub>, and odd M,<img src="2-2340040\12524c95-be92-4c13-a8e3-1feb4dc347ed.jpg" /> , as right M, M<sub>R</sub>:</p><disp-formula id="scirp.29407-formula55432"><label>(7)</label><graphic position="anchor" xlink:href="2-2340040\bbe3f05f-3052-4be2-b11d-dd47096a4cf5.jpg"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.29407-formula55433"><label>(8)</label><graphic position="anchor" xlink:href="2-2340040\8ebab230-dddb-414f-8c97-ff3e5c92b37d.jpg"  xlink:type="simple"/></disp-formula><p>The reversion of multi-vector M, denoted by<img src="2-2340040\557fbe5d-4c20-47d2-afc0-29be6d2a3d1d.jpg" />, can be defined as</p><disp-formula id="scirp.29407-formula55434"><label>(9)</label><graphic position="anchor" xlink:href="2-2340040\5bb2fb59-9f0f-4044-9cbe-7431f7174640.jpg"  xlink:type="simple"/></disp-formula><p>In order to describe the branching process, quaternion and multi-vector mathematics are suitable. When we combine quaternionic algebra, geometric algebra and calculus, the mathematical structure for branch dynamics will become apparent.</p><p>Suppose R, C, and H denote respectively real, complex, and quaternion fields. For a complex <img src="2-2340040\f410efc2-b151-445c-ab31-2e6543f7e962.jpg" /> with<img src="2-2340040\6d1a0972-b8e2-47a1-aadb-f7c10721f7d6.jpg" />, record <img src="2-2340040\95919ba4-8ff9-4909-b9b4-d1047f6966ed.jpg" /> and<img src="2-2340040\689eb712-476f-44f2-a743-be0695e406e6.jpg" />, called the real part and imaginary part respectively. And for a quaternion <img src="2-2340040\7b6b90cd-4dd5-4a23-8010-5b7b85590eed.jpg" /> with<img src="2-2340040\3c1c219d-5dfd-4351-b56e-dcfed1402411.jpg" />, record <img src="2-2340040\461773c4-d128-4e72-a140-989e0a9dc38b.jpg" /> and<img src="2-2340040\ce2e2335-2db9-444b-8c9e-4d4cb6786034.jpg" />, called the real or scalar part and vector or pure quaternion part respectively.</p><p>While a quaternion (q) can be expressed by the scalar-vector construction and the Cayley-Dickson construction, there is a conjugation of q</p><disp-formula id="scirp.29407-formula55435"><label>(10)</label><graphic position="anchor" xlink:href="2-2340040\93759e71-acd2-4434-b9d6-ba16772a3000.jpg"  xlink:type="simple"/></disp-formula><p>with <img src="2-2340040\8ef760b6-1f3f-4e34-8a30-954bbde09895.jpg" /> and norm<img src="2-2340040\2f3fcd19-079f-497a-9b25-c827d381a077.jpg" />. Then we have</p><disp-formula id="scirp.29407-formula55436"><label>(11)</label><graphic position="anchor" xlink:href="2-2340040\68a6f353-151e-42a1-b2e2-948b9e12854d.jpg"  xlink:type="simple"/></disp-formula><p>and</p><disp-formula id="scirp.29407-formula55437"><label>(12)</label><graphic position="anchor" xlink:href="2-2340040\cc9c8f40-ab88-4b9c-a939-13280a5f473e.jpg"  xlink:type="simple"/></disp-formula><p>where <img src="2-2340040\7ba904b7-8b89-4c52-9aef-fa8a78108a9d.jpg" /> and P constructs 3-dimentional Euclidean vector space.</p><p>Using Pauli matrices and Dirac spinors [6-8], we know that a quaternion can split into 2 &#215; 2 complex matrices by substitution <img src="2-2340040\8ed4d817-3e83-4581-a712-c221c5259572.jpg" /> [<xref ref-type="bibr" rid="scirp.29407-ref9">9</xref>], where <img src="2-2340040\7de4ad62-ef4e-4cfb-ac06-27fb2bf097c9.jpg" /> are the standard complex Pauli matrices as follows (together with unit matrix<img src="2-2340040\6638e178-dbc4-4ef9-92ff-cf5cd349686a.jpg" />)</p><disp-formula id="scirp.29407-formula55438"><label>(13)</label><graphic position="anchor" xlink:href="2-2340040\8a2b07f0-3abf-40eb-95b4-30623e475df5.jpg"  xlink:type="simple"/></disp-formula><p>and Dirac matrices become</p><disp-formula id="scirp.29407-formula55439"><label>(14)</label><graphic position="anchor" xlink:href="2-2340040\da883c64-d507-4b4f-9cc5-212e0bb4c775.jpg"  xlink:type="simple"/></disp-formula><p>in which<img src="2-2340040\75b56c43-3854-4cc5-93f9-98ae6fc58317.jpg" />.</p><p>So, a quaternion has an equivalent representation which we can call the Pauli representation as</p><disp-formula id="scirp.29407-formula55440"><label>(15)</label><graphic position="anchor" xlink:href="2-2340040\fd1d3d93-4258-412e-b5fe-385b2484d6a4.jpg"  xlink:type="simple"/></disp-formula><p>We see that Equation (15) is the same as the conjugation of q, Equation (10), as<img src="2-2340040\e594002a-8d9a-45be-ad45-5f4e1a303cc2.jpg" />, which means that the Pauli representation and Hamilton representation become conjugations of each other. The algebraic structure shows that the Hamilton representation and Pauli representation exist naturally for a quaternion, which constructs a conjugation pair.</p><p>In the Hamilton representation, there are a CayleyDickson branch, a Grassman branch and a Euclidian branch, in which the Cayley-Dickson branch is produced by the multiplication of quaternion G<sub>1</sub> and quaternion G<sub>2</sub> with the form of the dual complex function form as</p><disp-formula id="scirp.29407-formula55441"><label>(16)</label><graphic position="anchor" xlink:href="2-2340040\a849b840-3ca0-4d2c-8314-df9834f41da6.jpg"  xlink:type="simple"/></disp-formula><p>The Grassman branch produced by the multiplication of quaternion G<sub>1</sub> and quaternion G<sub>2</sub> with the form of scalar-vector representation as left branch</p><disp-formula id="scirp.29407-formula55442"><label>(17)</label><graphic position="anchor" xlink:href="2-2340040\57d6faa5-bae6-45c0-a346-db807f67c1f6.jpg"  xlink:type="simple"/></disp-formula><p>and a similar Euclidian branch as right branch</p><disp-formula id="scirp.29407-formula55443"><label>(18)</label><graphic position="anchor" xlink:href="2-2340040\9d065fcf-ee68-486c-9826-6ccca6170d4e.jpg"  xlink:type="simple"/></disp-formula><p>Noncommutative associative quaternion algebra provides rich algebraic branch structures, which establishes the foundations of branching. And a similar structure could be broadened to octonion (both quaternion algebra and octonion algebra belong to Clifford algebra), if we abandoned the associative property and then got only the alternative algebraic structure.</p><p>For multi-vector M, the frame basis can be unified in geometric algebra, spanned by</p><p><img src="2-2340040\88ae0610-7e78-45d7-877e-9064a2d44001.jpg" /></p><p>And for multi-vectors M and N, the geometric product is defined as</p><disp-formula id="scirp.29407-formula55444"><label>(19)</label><graphic position="anchor" xlink:href="2-2340040\98f32fae-345a-4894-868c-8434da90bc0c.jpg"  xlink:type="simple"/></disp-formula><p>where. means inner product and <img src="2-2340040\b108adfe-7cd7-4019-a6e2-28f1aa815be7.jpg" /> outer product.</p></sec><sec id="s3"><title>3. Interior Dynamics of Branches</title><p>Using the idea of genes, if there are two quaternion genes G<sub>1</sub> and G<sub>2</sub> in a physical or biological system, with the following forms</p><p><img src="2-2340040\8db7fa98-3f97-4f04-a07d-8d5d07f2b903.jpg" />, <img src="2-2340040\05cd8648-03de-4521-9778-6a1e08f00aec.jpg" />(20)</p><p>where we can call φ<sub>i</sub> information functions and A<sub>i</sub> potential functions (i = 1,2), their algebraic branches will construct their interior dynamics. This process (called 3I) includes the following steps.</p><sec id="s3_1"><title>3.1. Gene Interaction</title><p>A multiple of two genes will produce a Cayley-Dickson branch, a Grassman branch, and a Euclidian branch.</p><p>The Cayley-Dickson branch determines the mainstem:</p><disp-formula id="scirp.29407-formula55445"><label>(21)</label><graphic position="anchor" xlink:href="2-2340040\376b92ee-74f7-4317-9457-dcdb4e57159b.jpg"  xlink:type="simple"/></disp-formula><p>A scalar-vector branch produces various branches, and new genes will be produced when information functions and quality-quantity functions interact in a Grassman branch</p><disp-formula id="scirp.29407-formula55446"><label>(22)</label><graphic position="anchor" xlink:href="2-2340040\4fd13d86-8f20-44d6-8109-4aa0b8e7a784.jpg"  xlink:type="simple"/></disp-formula><p>and a Euclidian branch:</p><disp-formula id="scirp.29407-formula55447"><label>(23)</label><graphic position="anchor" xlink:href="2-2340040\848cc624-c1c6-4b15-bd30-ded00b7927b7.jpg"  xlink:type="simple"/></disp-formula></sec><sec id="s3_2"><title>3.2. Gene Interchange</title><p>The combination or mutation of two genes will also produce new genes such as</p><p><img src="2-2340040\c33ad1d8-f20e-470e-9bf1-01617f35cb79.jpg" />,<img src="2-2340040\d13245e6-8f57-448d-a82e-43a08245e93d.jpg" /> (24)</p></sec><sec id="s3_3"><title>3.3. Gene Interpretation</title><p>A gene may develop or represent in time-space (t, s) and interact with its environment. During this process, fractals will be generated at the ends.</p><p>When genes and time-space are present, a physical body will be generated naturally. This is a unified interior mechanism of nature.</p></sec></sec><sec id="s4"><title>4. Exterior Dynamics of Branches</title><p>Synthesizing mathematical quaternion and multi-vector and physical theories [10-12], the world is described by notations</p><disp-formula id="scirp.29407-formula55448"><label>(25)</label><graphic position="anchor" xlink:href="2-2340040\deb7a8db-7363-42d9-aa70-99487d97bbe6.jpg"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.29407-formula55449"><label>(26)</label><graphic position="anchor" xlink:href="2-2340040\fd31e053-69a2-458e-9a8d-b63032a88755.jpg"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.29407-formula55450"><label>(27)</label><graphic position="anchor" xlink:href="2-2340040\07a4f620-3349-4c1d-9007-911eb2560e6f.jpg"  xlink:type="simple"/></disp-formula><p>and</p><disp-formula id="scirp.29407-formula55451"><label>(28)</label><graphic position="anchor" xlink:href="2-2340040\4f047551-8325-4205-a29d-d7e0765be918.jpg"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.29407-formula55452"><label>(29)</label><graphic position="anchor" xlink:href="2-2340040\406a6549-924a-4179-b211-2f6a3f88eafb.jpg"  xlink:type="simple"/></disp-formula><p>Keeping the local gauge invariance of physical laws, we know</p><disp-formula id="scirp.29407-formula55453"><label>(30)</label><graphic position="anchor" xlink:href="2-2340040\fa62563a-65ed-42c6-ae02-673f72a2bb84.jpg"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.29407-formula55454"><label>(31)</label><graphic position="anchor" xlink:href="2-2340040\71f8b02d-a84a-4b3b-bc18-c8801bf2dd8c.jpg"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.29407-formula55455"><label>(32)</label><graphic position="anchor" xlink:href="2-2340040\5d6af9e9-4ed0-4c20-a0f3-35757ae4e196.jpg"  xlink:type="simple"/></disp-formula><p>where R means Lorentz rotation and matrix UU<sup>–1</sup> = I.</p><p>When the left branch is driven by M<sub>+</sub> = Ψ – B and right branch by <img src="2-2340040\81697a86-850e-4ff4-89b4-d58f90ad13de.jpg" /> = A and Ψ = φ – iθ and A are linked by following equation</p><disp-formula id="scirp.29407-formula55456"><label>(33)</label><graphic position="anchor" xlink:href="2-2340040\65de6422-a268-45c0-8fa3-198d18ac0995.jpg"  xlink:type="simple"/></disp-formula><p>we see that the exterior dynamics is mastered by</p><disp-formula id="scirp.29407-formula55457"><label>(34)</label><graphic position="anchor" xlink:href="2-2340040\74d73046-85bf-4c70-a032-84056e2bca01.jpg"  xlink:type="simple"/></disp-formula><p>and</p><disp-formula id="scirp.29407-formula55458"><label>(35)</label><graphic position="anchor" xlink:href="2-2340040\9c4d668a-c420-4c99-a9ba-993b07047819.jpg"  xlink:type="simple"/></disp-formula><p>so the system Lagrangians become</p><disp-formula id="scirp.29407-formula55459"><label>(36)</label><graphic position="anchor" xlink:href="2-2340040\44752c7e-3950-4b2b-9e9e-f8621f1801cb.jpg"  xlink:type="simple"/></disp-formula><disp-formula id="scirp.29407-formula55460"><label>(37)</label><graphic position="anchor" xlink:href="2-2340040\ee092d0e-5722-4bac-9b4c-5120833d28ec.jpg"  xlink:type="simple"/></disp-formula><p>As action <img src="2-2340040\a6119689-773f-4e45-aeb7-ae9754f2d40e.jpg" /> and<img src="2-2340040\032b39f6-df03-400f-82da-dd999f0fe90e.jpg" />, one knows dynamical mechanism.</p></sec><sec id="s5"><title>5. Branch Dynamics of the Physical and Biological World</title><p>Branch dynamics can naturally produce physical and biological branching in cases where two genes act with each other in quaternion space-time. Via the main-stem process of gene-interaction, gene-interchange and gene-interpretation in interior dynamics, various branches are generated and form fractals at the ends. When left and right branching are controlled by physics, exterior developing can be naturally formed.</p><sec id="s5_1"><title>5.1. Two Branching</title><p>When interior genes are mastered by gene functions G<sub>i</sub> and G<sub>j</sub>, it will produce a Grassman branch</p><disp-formula id="scirp.29407-formula55461"><label>(38)</label><graphic position="anchor" xlink:href="2-2340040\2849e4a5-6b5a-4156-9261-f72f08676f62.jpg"  xlink:type="simple"/></disp-formula><p>and a Euclidian branch</p><disp-formula id="scirp.29407-formula55462"><label>(39)</label><graphic position="anchor" xlink:href="2-2340040\c59c2c9b-5679-42cf-86f7-f3b820a806a5.jpg"  xlink:type="simple"/></disp-formula><p>At present, whether exterior development is dominated by left or right action, two branching will be produced. The two branches form a basic branch structure in the world, both physically and biologically. Obviously, left and right branches will not be complete symmetry.</p></sec><sec id="s5_2"><title>5.2. Multi-Branching</title><p>Because there are different environments, complete symmetry seldom happens in nature, even if the same gene drives interior development. Furthermore, according to above branching ideas, no complete symmetry could happen in multi-branching. Different genes and different environments will introduce different branching, while genes decide interior processes and physical laws control exterior forms.</p></sec></sec><sec id="s6"><title>6. Concluding Remarks</title><p>Branch dynamics may be a valuable scientific exploration, as branches are basic general phenomena that have had no theory to explain them before. Quaternion and multi-vector mathematics provides good explanations of branch structures and reveals the interior mechanism of gene branch dynamics. And physical laws could explain exterior dynamics and interactions with environments. So it appears that branch dynamics is a good theoretical framework for interpretation of physical and biological branching phenomena. However, this paper only introduces a basic framework, in which information in gene functions determines interior dynamics, and the structure of time-space and distribution of matter-energy determine exterior dynamics. These physical ideas could be further researched in the future, as branch dynamics reveals a unified mechanism of nature while it also introduces a general framework for understanding the cosmos, so that we should clarify details about what happens within various branches. When we understand the branching mechanism, we extend our knowledge about various branches of natural phenomena.</p></sec><sec id="s7"><title>7. Acknowledgements</title><p>The author is grateful to Ms. Regina P. 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