<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">JMP</journal-id><journal-title-group><journal-title>Journal of Modern Physics</journal-title></journal-title-group><issn pub-type="epub">2153-1196</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/jmp.2013.43A057</article-id><article-id pub-id-type="publisher-id">JMP-29334</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Physics&amp;Mathematics</subject></subj-group></article-categories><title-group><article-title>
 
 
  A Density Functional Theory Study of Methoxy and Atomic Hydrogen Chemisorption on Au(100) Surface
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>.</surname><given-names>N’dollo</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>P.</surname><given-names>S. Moussounda</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>T.</surname><given-names>Dintzer</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>F.</surname><given-names>Garin</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib></contrib-group><aff id="aff2"><addr-line>Laboratoire des Matériaux, Surfaces et Procédés pour la Catalyse (LMSPC), Université de Strasbourg, Strasbourg, France</addr-line></aff><aff id="aff1"><addr-line>Groupe de Simulations Numériques en Magnétisme et Catalyse, Département de Physique,Faculté des Sciences, Université Marien Ngouabi, Brazzaville, Congo</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>ps_moussounda@yahoo.fr(PSM)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>29</day><month>03</month><year>2013</year></pub-date><volume>04</volume><issue>03</issue><fpage>409</fpage><lpage>417</lpage><history><date date-type="received"><day>December</day>	<month>26,</month>	<year>2012</year></date><date date-type="rev-recd"><day>January</day>	<month>27,</month>	<year>2013</year>	</date><date date-type="accepted"><day>February</day>	<month>7,</month>	<year>2013</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
   
   The adsorption of CH<sub>3</sub>O and H on the (100) facet of gold was studied using self-consistent periodic density functional theory (DFT-GGA) calculations. The best binding site, energy, and structural parameter, as well as the local density of states, of each species were determined. CH<sub>3</sub>O is predicted to strongly adsorb on the bridge and hollow sites, with the bridge site as preferred one, with one of the hydrogen atoms pointing toward a fourfold vacancy (bridge-H hollow). The top site was found to be unstable, the CH<sub>3</sub>O radical moving to the bridge –H top site during geometry optimization. Adsorption of H is unstable on the hollow site, the atom moving to the bridge site during geometry optimization. The 4-layer slab is predicted to be endothermic with respect to gaseous H<sub>2</sub> and a clean Au surface. 
  
 
</p></abstract><kwd-group><kwd>Chemisorption; Density Functional Calculations; Gold; Methoxy; Hydrogen</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>The methoxy group CH<sub>3</sub>O and hydrogen H species have been identified as two intermediates in the decomposition of methanol through an initial O-H bond scission on several transition metal surfaces. For methoxy group CH<sub>3</sub>O, it appears as an intermediate also in formaldehyde production and in the synthesis of hydrogenated products of CO or its inverse reaction. For catalytic reactions, knowledge of the adsorption geometry of reactants is crucial since it decides on the energy changes during the reaction as well as on the capability of adsorbed species to interact with another one.</p><p>Over the last two decades, a number of experimental studies on methoxy over various metal surfaces have been performed using several techniques. Specifically, methoxy on Cu(110) [1-4], Cu(111) [5-7], Cu(100) [8- 13], Ag(111) [<xref ref-type="bibr" rid="scirp.29334-ref14">14</xref>], Ni(111) [<xref ref-type="bibr" rid="scirp.29334-ref15">15</xref>], Ni(110) [16,17], Pt(111) [<xref ref-type="bibr" rid="scirp.29334-ref18">18</xref>] has been studied extensively by using X-ray photoelectron diffraction (XPD), reflection absorption infrared spectroscopy (RAIRS), near-edge X-ray absorption fine structure (NEXAFS), temperature-programmed desorption (TPD), low-energy electron diffraction (LEED), scanning tunneling spectroscopy (STM), high-resolution electron energy-loss spectroscopy (HREELS), energy scanned photoelectron diffraction (PED) and surface extended X-ray absorption fine structure (SEXAFS). We note that the XPD [<xref ref-type="bibr" rid="scirp.29334-ref5">5</xref>], SEXAFS [<xref ref-type="bibr" rid="scirp.29334-ref6">6</xref>] and NEXAFS [<xref ref-type="bibr" rid="scirp.29334-ref6">6</xref>] studies for CH<sub>3</sub>O/Cu(111) and RAIRS [<xref ref-type="bibr" rid="scirp.29334-ref14">14</xref>] for CH<sub>3</sub>O/ Ag(111), showed that the CH<sub>3</sub>O radical resides in threefold hollow site and the C–O bond is normal to the surface. Whereas, in the PED study [<xref ref-type="bibr" rid="scirp.29334-ref7">7</xref>], it was also found that the CH<sub>3</sub>O radical adopted a geometry in which the C–O bond was close to perpendicular to the surface and the O atom occupied a threefold hollow site, fcc. Despite the existence of a large number of studies, conflicting structural assignments still exist. The NEXAFS study of Outka et al. [<xref ref-type="bibr" rid="scirp.29334-ref9">9</xref>] shows that methoxy C–O axis will be found with an angle of 20˚ - 40˚ relative to the Cu(100) surface normal. Using the infrared spectroscopy [10,11], Ryberg also found that methoxy is tilted when adsorbed on this surface. Camplin et al. [<xref ref-type="bibr" rid="scirp.29334-ref12">12</xref>], using the RAIRS technique, found the C–O methoxy radical bond to be perpendicular to the Cu(100) surface. A later study of Lindner et al. [<xref ref-type="bibr" rid="scirp.29334-ref13">13</xref>] with a combined NEXAFS and photoelectron research concluded that the C–O axis is perpendicular to the surface and that a low symmetry adsorption site between the bridge and the 4-fold hollow site is occupied.</p><p>Several theoretical studies have also been done on the methoxy—metal surface interactions [19-28]. A manyelectron embedding theory, at the ab initio configuration interaction level, was used to study the adsorption of methoxy on the Ni(111) surface [<xref ref-type="bibr" rid="scirp.29334-ref20">20</xref>]. That work showed how CH<sub>3</sub>O is adsorbed at 3-fold hollow sites with the C–O axis tilted 5˚ from the normal to the surface plane. Wang et al. [<xref ref-type="bibr" rid="scirp.29334-ref22">22</xref>] used density functional theory (DFT) to determine CH<sub>3</sub>O/Ni(111) properties. They found that CH<sub>3</sub>O interacts with the surface through oxygen and has a binding energy of 2.58 eV for the threefold fcc hollow site. Witko et al. [19,21] have studied the adsorption of CH<sub>3</sub>O on Cu(111) surface by performing ab initio HFLCAO calculations. Again it was found that CH<sub>3</sub>O is usually adsorbed at 3-fold hollow sites with a slight preference for fcc sites. On Cu(111), the C–O axis lies perpendicular to the metal surface and the calculated adsorption energy is 2.80 eV. Gomes and coworker [<xref ref-type="bibr" rid="scirp.29334-ref23">23</xref>] have studied the same adsorption of CH<sub>3</sub>O on Cu(111) surface, using their DFT approach and cluster models. They reported that three-fold hollow sites are the most stable position for methoxy, with fcc and hcp hollows having binding energies of 2.50 eV and 2.18 eV, respectively. Using a DFT approach Greeley and Mavrikakis [<xref ref-type="bibr" rid="scirp.29334-ref24">24</xref>] examined the reaction of CH<sub>3</sub>O on Pt(111) top site. They evaluated chemisorption energy around 1.54 eV. Recently, Pang et al. [<xref ref-type="bibr" rid="scirp.29334-ref25">25</xref>] have carried out the methoxy adsorption on Ni(111), Ni(110) and Ni(100) surfaces using a DFT method. Very little ab initio and DFT studies have been carried out for methoxy adsorbed on Au. Gomes and Gomes [<xref ref-type="bibr" rid="scirp.29334-ref23">23</xref>] found that CH<sub>3</sub>O binds at all high symmetric sites of Au (111) with a preference for the hollow fcc site. The corresponding chemisorption energy for this site was found to be 0.89 eV. With a same surface, Chen et al. [<xref ref-type="bibr" rid="scirp.29334-ref26">26</xref>] found that the bridge site is most stable. The corresponding binding energy was calculated to be 0.99 eV. To the best of our knowledge, there is no theoretical study of CH<sub>3</sub>O adsorption on the Au(100) surface in the literature.</p><p>Atomic hydrogen (H) is probably one of the most extensively studied adsorbate in a large number of catalytic processes. Details on the H chemisorption on transition metal surfaces (TMS) can be found in the literature [29, 30]. A series of TPD, LEED, STM, and electron energy loss spectroscopy (EELS) studies of H adsorption have performed by several groups on Ni(111) [31-33]. Schick et al. have applied HREELS to study H on Ir(111) [<xref ref-type="bibr" rid="scirp.29334-ref31">31</xref>]. Techniques such as LEED [34-37], HREELS [<xref ref-type="bibr" rid="scirp.29334-ref38">38</xref>], LERS [<xref ref-type="bibr" rid="scirp.29334-ref39">39</xref>], UPS [<xref ref-type="bibr" rid="scirp.29334-ref40">40</xref>] and calorimetric measurements [<xref ref-type="bibr" rid="scirp.29334-ref41">41</xref>] have been applied to investigate the adsorption of H on the Pt(100), Pt(110), and Pt(111) surfaces. A number of theoretical studies have also performed for H on TMS. Effective medium theory study for H adsorption on Ni(111), Ni(100), W(100) and W(110) has been reported by Nordlander et al. [<xref ref-type="bibr" rid="scirp.29334-ref42">42</xref>]. Jiang and Carter [<xref ref-type="bibr" rid="scirp.29334-ref43">43</xref>] have performed a DFT study of H adsorption on Fe(110). Extensive ab initio calculations and the DFT method have been used to investigate the adsorption of hydrogen on Pt(111) [<xref ref-type="bibr" rid="scirp.29334-ref4447">4447</xref>], Pt(110) [47,48], Pt(100) [47,49,50], Ni(100) [<xref ref-type="bibr" rid="scirp.29334-ref49">49</xref>], Ni(111) [51,52] and Cu(001) [<xref ref-type="bibr" rid="scirp.29334-ref53">53</xref>]. To our best knowledge, there are no studies at DFT level of hydrogen adsorption on Au(100) surface.</p><p>In this contribution, we present a systematic DFT study of the properties of atomic H and CH<sub>3</sub>O radical on the Au(100). Our paper is organized as follows. Section 2 gives the details of the computational method. The results and discussions are followed in Section 3. Section 4 concludes with a short summary.</p></sec><sec id="s2"><title>2. Computational Method</title><p>We are based our DFT calculations on the DACAPO ab initio package [<xref ref-type="bibr" rid="scirp.29334-ref54">54</xref>]. A (2 &#215; 2) unit cell is used to construct a four or five-layer Au(100) slab. This corresponds to a surface coverage of 1/4 ML when there is only one adsorbate per unit cell. The unit cell is repeated in super cell with successive slabs separated by a vacuum region of 13 &#197;. Adsorption is allowed on only one of the two exposed surfaces. The top layers of the slab and the adsorbate were allowed to relax. The maximum force criterion of 0.05 eV/&#197; was considered for convergence. The surface irreducible Brillouin zone was sampled by 18 special k-points using the <img src="3-7501143\d1658df7-3078-40f8-a424-c55b2d52f384.jpg" /> Monkhorst-Pack grids.</p><p>The Kohn-Sham one-electron valence states are expanded in a basis of plane waves with kinetic energies up to 400 eV, and ionic cores were described by ultra soft pseudo potentials [<xref ref-type="bibr" rid="scirp.29334-ref55">55</xref>]. All calculations were performed non-spin polarized. The exchange-correlation potential and energy are described self-consistently using GGAPW91 functional [<xref ref-type="bibr" rid="scirp.29334-ref56">56</xref>]. The electron density is determined by iterative diagonalization of the Kohn-Sham Hamiltonian, Fermi-population of the Kohn-Sham states <img src="3-7501143\05566b7a-f25b-476c-ba55-6dc0ece743dd.jpg" /> of the resulting electron density. Total energies are extrapolated to<img src="3-7501143\670337e5-f9eb-4d58-80e2-7018575711a5.jpg" />.</p><p>Using DFT as described above yields a bulk lattice constant of Au of 4.18 &#197;, to be compared with the experimental value of 4.08 &#197; [<xref ref-type="bibr" rid="scirp.29334-ref56">56</xref>]. Our rather high result is in perfect agreement with other theoretical evaluation using similar methods (4.17 &#197; [<xref ref-type="bibr" rid="scirp.29334-ref58">58</xref>] or 4.19 &#197; [<xref ref-type="bibr" rid="scirp.29334-ref59">59</xref>]).</p></sec><sec id="s3"><title>3. Results and Discussion</title><p>In this section we describe the properties of the adsorbates studied, including the binding energies, site preferences, geometries, and local density of states (LDOS), and we compare these results with theoretical or experimental data available on transition and noble metal surfaces.</p><sec id="s3_1"><title>3.1. CH<sub>3</sub>O Chemisorption on Au(100)</title><sec id="s3_1_1"><title>3.1.1. Chemisorption Energies</title><p>As usual, the adsorption energy (E<sub>ads</sub>) is evaluated as:</p><disp-formula id="scirp.29334-formula85310"><label>(1)</label><graphic position="anchor" xlink:href="3-7501143\533f0499-f534-4d98-92d3-9d848cd948b2.jpg"  xlink:type="simple"/></disp-formula><p>where <img src="3-7501143\d5599351-10c2-4bda-8bb1-b954e54d6cc7.jpg" /> is the total energy of the free <img src="3-7501143\14c3026c-6925-48c5-aa07-71ad7792934b.jpg" /> radical in the gas phase, E<sub>slab</sub> is the total energy of the clean Au slab and <img src="3-7501143\d433d6a1-e2d9-4afd-b448-d29f9e81623b.jpg" /> is the total energy of the <img src="3-7501143\787424e3-6bf7-4602-b185-bc10b4df3945.jpg" /> system. With this definition, a positive E<sub>ads</sub> corresponds to a stable adsorption on the slab. The energy of the isolated<img src="3-7501143\06629ba2-46b8-4d16-adf8-7ba4fb028ca4.jpg" /> radical was determined by performing calculations on a single molecule in a cubic cell with 20 &#197; parameter.</p><p>The adsorption of <img src="3-7501143\6e663905-ad98-48fc-82bb-aefbd91b42b3.jpg" /> on Au(100) at high-symmetry top, bridge and hollow sites, as shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>, were investigated. For the bridge site, two different hydrogen orientations were considered: one of the H atoms in the CH<sub>3</sub> group points either toward the nearest-neighbor Au atom (bridge-H top) or toward a fourfold vacancy (bridge-H hollow).</p><p>Adsorption energies for CH<sub>3</sub>O radical at the hollow, bridge-H top and bridge-H hollow, calculated using different numbers of layers in the slab for methoxy coverage of 0.25 ML are listed in <xref ref-type="table" rid="table1">Table 1</xref>. The top site was found to be unstable, the CH<sub>3</sub>O radical moving to the hollow site during geometry optimization. From <xref ref-type="table" rid="table1">Table 1</xref>, it can be found that the adsorption energy of CH<sub>3</sub>O increases by 0.586 eV from 4 to 5-layer slab, for all adsorption sites. In addition, one can see from this table that the most stable site for CH<sub>3</sub>O adsorption on Au(100)</p><p>is the bridge site with one of the hydrogen atoms pointing toward a fourfold vacancy (bridge-H hollow), at four or five layers of Au. The corresponding adsorption energy for this site was found 1.727 eV (4-layer slab) and 2.314 eV (5-layer slab). The bridge-H top is significantly less stable by 0.153 eV. The adsorption energy difference between bridge-H hollow and hollow sites is only 30 meV. No calculations of CH<sub>3</sub>O radical adsorption on Au(100) have been published. There are theoretical results for adsorption in the bridge site on the Au(111), Ni(111), Ni(110), Ni(100), Cu(111), Cu(110) and Cu(100) surfaces. Gomes and Gomes [<xref ref-type="bibr" rid="scirp.29334-ref23">23</xref>] used a cluster model to study the adsorption of CH<sub>3</sub>O on Au(111) surface and predicted a chemisorption energy of 0.471 eV. For the same surface, Chen et al. [<xref ref-type="bibr" rid="scirp.29334-ref26">26</xref>], using ab initio DFT-GGA calculations with three-layer slab, reported adsorption energy of 0.999 eV for coverage of 1/6 ML. The discrepancy in binding energies may be due to the model effect and the computational methodology (slab vs. cluster). Pang et al. [<xref ref-type="bibr" rid="scirp.29334-ref25">25</xref>] have described the methoxy adsorption on Ni(111), Ni(100) and Ni(110) with non-spin-polarized calculations elaborately, and found the adsorption energy of 2.292 eV, 2.478 eV, 2.978 eV (in the short-bridge) and 2.281 eV (in the long-bridge) at 1/6 ML, respectively. In the case of methoxy adsorption on Cu(111) surface, Gomes et al. [<xref ref-type="bibr" rid="scirp.29334-ref23">23</xref>] and Chen et al. [<xref ref-type="bibr" rid="scirp.29334-ref27">27</xref>] found the adsorption energies of 2.036 eV and 2.363 eV, respectively. For the Cu(100) and Cu(110) surfaces, Pick [<xref ref-type="bibr" rid="scirp.29334-ref28">28</xref>], using ab initio DFT-GGA calculations with fivelayer Cu slabs, obtained the binding energies of 2.540 eV, 2.690 eV (in the short-bridge) and 2.350 eV (in the longbridge), respectively. These calculated chemisorption energies are much higher than our results.</p></sec><sec id="s3_1_2"><title>3.1.2. Geometric Parameters</title><p>Now turn our attention to the geometric parameters. First of all, we checked that the properties of the isolated CH<sub>3</sub>O were accurately reproduced. <xref ref-type="table" rid="table2">Table 2</xref> compares our calculated and previous theoretical [<xref ref-type="bibr" rid="scirp.29334-ref25">25</xref>] bond lengths and bond angles of CH<sub>3</sub>O. Our results are in good agreement with previous DFT results [<xref ref-type="bibr" rid="scirp.29334-ref26">26</xref>]. Second, we examined the structural parameters, upon adsorption. It can be seen from <xref ref-type="table" rid="table1">Table 1</xref> that the geometric parameters are independent of number of layers in the slab. Similar structural parameters were calculated for the hollow and bridge-H hollow sites. The H–C–H angle is increased from 106.4˚ (shortest H–C–H angle) in isolated methoxy to 108.5˚ (longest H–C–H angle) corresponding to methoxy adsorbed at a bridge-H hollow site. On the bridge-H top site the value of this longest H–C–H angle is 108.7˚. On the bridge-H hollow and bridge-H top sites the longest values of C–O–Au angle are about 120.7˚ and 134.3˚, respectively. Our values are significantly smaller than that the value (179.2˚) obtained par Chen et al. [<xref ref-type="bibr" rid="scirp.29334-ref26">26</xref>] for</p><p><xref ref-type="table" rid="table1">Table 1</xref>. Adsorption energies (E<sub>ads</sub>) and geometries for CH<sub>3</sub>O radical at the hollow, bridge-H top and bridge-H hollow, calculated using different numbers of layers in the slab for methoxy coverage of 0.25 ML. Numbers in parentheses represent the number of bonds with that length or the number of equal angles.</p><p><img src="3-7501143\6ced5cbc-6474-4f64-b5d7-f19a54254461.jpg" /></p><p><xref ref-type="table" rid="table2">Table 2</xref>. Comparison between our calculations for geometric parameters for free CH<sub>3</sub>O and previous calculated results. Numbers in parentheses represent the number of bonds with that length or the number of equal angles.</p><p><img src="3-7501143\120d9eff-5ced-4c4b-a6a7-826b0ca6c34a.jpg" /></p><p><sup>(a)</sup>Reference [<xref ref-type="bibr" rid="scirp.29334-ref26">26</xref>].</p><p><img src="3-7501143\ef661f2a-e638-4a5c-9068-2cb73e5aff07.jpg" />on the bridge site. For CH<sub>3</sub>O on the bridge H-top site, the H-C-O angle, in the range of 109.9˚ - 111.0˚, is smaller than that the free methoxy (112.3˚), and in good agreement with the theoretical results by Pick (109.9˚ - 110.0˚) for the adsorbed CH<sub>3</sub>O on Cu(100) on the bridge site [<xref ref-type="bibr" rid="scirp.29334-ref28">28</xref>].</p><p>As Tables 1 and 2 show, the C–H bond is reduced from 1.119 &#197; of the isolated CH<sub>3</sub>O radical to 1.101 &#197;. The optimized C–H bond is very similar to the C–H bond reported by Pick [<xref ref-type="bibr" rid="scirp.29334-ref28">28</xref>]. The calculated C–O bond length for the adsorbed CH<sub>3</sub>O, in the range of 1.414 - 1.424 &#197;, is longer than that of the free species (1.341 &#197;), and in excellent agreement with the theoretical results by Pick (1.420 &#197;) [<xref ref-type="bibr" rid="scirp.29334-ref28">28</xref>] and Chen et al. (1.408 &#197;) [<xref ref-type="bibr" rid="scirp.29334-ref26">26</xref>], and with the experimental results by Hoffmann [<xref ref-type="bibr" rid="scirp.29334-ref7">7</xref>],</p><p><img src="3-7501143\051df9a7-3f56-4927-86a5-adb495cd538a.jpg" />&#197; and Amemiya et al. [<xref ref-type="bibr" rid="scirp.29334-ref6">6</xref>], 1.460 &#177; 0.005 &#197;. Compared with the bridge-H top site, the bridge-H hollow geometry has longer O-Au bonds. In addition, the calculated d<sub>O-Au</sub> values for the both bridge sites are smaller than the corresponding ones obtained by using DFT/B3LYP for Au<sub>7</sub> cluster [<xref ref-type="bibr" rid="scirp.29334-ref23">23</xref>]. Comparing with the ionic radius of Au<sup>+</sup> and O<sup>2</sup><sup>–</sup>, which are 1.37 and 1.32 &#197;, respectively, [<xref ref-type="bibr" rid="scirp.29334-ref60">60</xref>]; the values of d<sub>O</sub><sub>-Au</sub> are smaller than the ionic radius sum, indicating the strong interaction between O of CH<sub>3</sub>O and the surface Au atom.</p></sec><sec id="s3_1_3"><title>3.1.3. Analysis of Local Density of States (LDOS)</title><p>We now comment on the evolution of the local electronic structure of the molecule and the surface upon adsorption for the most stable adsorption site. <xref ref-type="fig" rid="fig2">Figure 2</xref>(a) compares the LDOS of O in CH<sub>3</sub>O, adsorbed on a preferred bridge-H hollow site, (continuous curve) to the LDOS of O in CH<sub>3</sub>O, when it is in a gas phase (dashed curve), i.e. in the case of a free CH<sub>3</sub>O radical. The graph obviously falls into two main regions. The first region, from −13 eV to −9 eV, has essentially a mixed <img src="3-7501143\9c4f519f-b66c-43a8-bf5d-57e30c7cfb56.jpg" /> character for O atom. Here, the O density of states can be clearly recognized as they are essentially shifted to lower binding energies by ca. 1.42 eV with respect to the free CH<sub>3</sub>O radical. The second region of the graph is the energy range from −9 eV to + 2 eV. The states represented in this region all contain O 2s and O 2p characters. One can see from <xref ref-type="fig" rid="fig2">Figure 2</xref>(a) that a dramatic change in these orbitals occurs upon adsorption. There is a strong mixing between these orbitals and the 5d states of Au, particularly the d<sub>xz</sub>-band of the Au surface.</p><p>The Au surface is affected by the CH<sub>3</sub>O adsorption. By examining the components of the Au-d orbitals, we found that dxz is the most affected. <xref ref-type="fig" rid="fig2">Figure 2</xref>(b) shows the LDOS at a surface gold atom of the bridge-H hollow site (solid line) with the LDOS for a Au atom in the clean surface (dotted line) superimposed. The characters of the two curves are not similar. The LDOS curve for the chemisorption system has a small peak of resonance at ~ −11.36 eV which is due to density in oxygen 2s and 2p-derived orbitals lying within the region of the cut. The other notable differences are the presence of two peaks of</p><p>resonance at about −6.31 eV and −0.86 eV in the chemisorption system curve. These peaks of resonance correspond to states with O 2s and O 2p characters as described previously. In addition, on can notice there is a clear intensity decrease in the −3.68 eV to −1.46 eV region, and the appearance of continuously distributed states from −0.25 eV up to the Fermi level.</p></sec></sec><sec id="s3_2"><title>3.2. H Adsorption on Au(100) Surface</title><sec id="s3_2_1"><title>3.2.1. Chemisorption Energies and Geometrical Parameters</title><p>In this subsection, we investigate the adsorption of H on Au(100) surface. The adsorption energy for atomic hydrogen is calculated by the equation:</p><disp-formula id="scirp.29334-formula85311"><label>(2)</label><graphic position="anchor" xlink:href="3-7501143\f96130ba-c263-4c7f-9c10-cd5a653239c4.jpg"  xlink:type="simple"/></disp-formula><p>where n is the number of H atoms in the surface unit, <img src="3-7501143\02014949-7e06-4836-9b50-8c77ac972b95.jpg" />and E<sub>Au(100)</sub> are the energies of the Au(100) system with and without nH absorbates, while E<sub>H2</sub> is the ground state energy of a free H<sub>2</sub> molecule. The first and last terms are calculated with the same parameters (ksampling, energy cutoff, etc.). The second term is calculated with only the Γ-point for the Brillouin zone sampling. With this definition, a positive E<sub>ads</sub> corresponds to a stable adsorption on the slab.</p><p>The energy of the free hydrogen molecule was determined from calculations performed on a single hydrogen molecule in a cubic cell with an edge of 15 &#197;. We made sure that the properties of the free H<sub>2</sub> molecule were accurately reproduced. <xref ref-type="table" rid="table3">Table 3</xref> compares the calculated and experimental bond lengths d<sub>H-H</sub> for gas-phase hydrogen. Our calculated result (0.7600 &#197;) can be compared with the experimental value of 0.7414 &#197; [<xref ref-type="bibr" rid="scirp.29334-ref57">57</xref>]. Our bigger result is however in excellent agreement with other theoretical evaluation using similar methods [43,61,62].</p><p>We start by considering the on-top and bridge adsorption of H on Au(100) for coverages of 0.25 ML and 0.5 ML. The hollow site was found to be unstable, the atom moving to the bridge site during geometry optimization. This phenomenon was also observed by Moussounda et al. [<xref ref-type="bibr" rid="scirp.29334-ref49">49</xref>] and Saad et al. [<xref ref-type="bibr" rid="scirp.29334-ref47">47</xref>] on the adsorption of H on Pt(100). The adsorption energies for different number of layers in the slab and different coverages are reported in <xref ref-type="table" rid="table4">Table 4</xref>. It might be surprising to find a desorption energy for H in the case of the 4-layer slab for the two coverages, in other terms, the 4-layer slab is predicted to be endothermic with respect to gaseous H<sub>2</sub> and a clean Au surface. These observations are consistent with the theoretical results reported by Sundell et al. [<xref ref-type="bibr" rid="scirp.29334-ref53">53</xref>], and Jiang et al. [<xref ref-type="bibr" rid="scirp.29334-ref63">63</xref>] and Fabiani et al. [<xref ref-type="bibr" rid="scirp.29334-ref64">64</xref>] for <img src="3-7501143\3b9d205b-27f8-4dfd-81b1-c652601fa76e.jpg" /> and<img src="3-7501143\403c1a36-7fd8-46a8-853f-12c404eefff8.jpg" />, respectively. Our results reveal that hydrogen preferred adsorbs at the bridge site on Au(100) for the 5-layer slab. The adsorption energy of bridged bonded</p><p><xref ref-type="table" rid="table3">Table 3</xref>. Comparison between the calculated and experimental bond lengths d<sub>H-H</sub> of free hydrogen molecule.</p><p><img src="3-7501143\ed196a96-575a-4b08-b803-df7867e2b5dc.jpg" /></p><p><sup>(a)</sup>Reference [<xref ref-type="bibr" rid="scirp.29334-ref61">61</xref>], <sup>(b)</sup>Reference [<xref ref-type="bibr" rid="scirp.29334-ref50">50</xref>], <sup>(c)</sup>Reference [<xref ref-type="bibr" rid="scirp.29334-ref43">43</xref>], <sup>(d)</sup>Reference [<xref ref-type="bibr" rid="scirp.29334-ref62">62</xref>], <sup>(e)</sup> Reference [<xref ref-type="bibr" rid="scirp.29334-ref57">57</xref>].</p><p><xref ref-type="table" rid="table4">Table 4</xref>. Adsorption energies (E<sub>ads</sub>) and bond lengths (d<sub>H-Au</sub>) obtained for hydrogen adsorbed at the top and bridge sites of Au(100).</p><p><img src="3-7501143\3cd0d07e-fa99-4113-9bc4-e6b556330b1f.jpg" /></p><p>H decreases significantly with the increasing H coverage. At the coverage of 0.25 ML, we found an adsorption energy of 0.568 eV. No calculations of hydrogen adsorption on Au(100) have been published. However, comparative values calculated at the same H coverage of 0.25 ML for adsorption in bridge site on Pt(100) and Pt(110) are 0.610 eV [<xref ref-type="bibr" rid="scirp.29334-ref49">49</xref>] and 0.640 eV [<xref ref-type="bibr" rid="scirp.29334-ref64">64</xref>], respectively. Lai et al. [<xref ref-type="bibr" rid="scirp.29334-ref50">50</xref>] obtained an adsorption energy of 0.542 eV for<img src="3-7501143\5003db0c-f502-493f-8678-a8f5c74bbc37.jpg" />. Kresse et al. [<xref ref-type="bibr" rid="scirp.29334-ref62">62</xref>] reported an adsorption energy of 0.567 eV for<img src="3-7501143\2e51b58d-81b6-4684-a7ad-f487fd8b8ee2.jpg" />, which is in good agreement with our value.</p><p>From <xref ref-type="table" rid="table4">Table 4</xref>, we note the d<sub>H-Au</sub> bond lengths for both sites. The H–Au distance does not depend on the coverage and increases as usual with the adsorption surface coordination of the adsorbate (1.610 &#197; and 1.790 &#197; for top and bridge sites, respectively). Theoretical calculations using similar method for H/Pt(100) [<xref ref-type="bibr" rid="scirp.29334-ref49">49</xref>] found the same result for top and bridge sites (1.572 &#197; and 1.763 &#197;, respectively). DFT calculations, using DACAPO package [<xref ref-type="bibr" rid="scirp.29334-ref46">46</xref>], obtained a similar H-Pt bond length for adsorption of H on-top of Pt(111) (1.570 &#197;). With hydrogen in the unstable top site, our H-Au bond length (1.61 &#197;) is somewhat higher than the theoretical result published by Haroun et al. [<xref ref-type="bibr" rid="scirp.29334-ref52">52</xref>] who have reported 1.46 &#197; for <img src="3-7501143\80f1c6df-154b-4d6d-82f6-9ce51fc486da.jpg" />.</p></sec><sec id="s3_2_2"><title>3.2.2. LDOS Calculations</title><p>In order to obtain a deeper understanding of the properties of<img src="3-7501143\7aba2262-c962-4c54-9b38-c3fdd2d0d934.jpg" />, we have also analyzed their local density of states (LDOS), in the most stable energetically site for 0.25 ML. The H LDOS for an adsorbed H on Au(100) for the bridge site is shown in <xref ref-type="fig" rid="fig3">Figure 3</xref> as well as the corresponding LDOS of a free H atom. We can see that the state situated at ~ –5.30 eV initially is found dispersed on a largest domain of energy (~10 eV). The H 1s band has a strong interaction with Au bands, as seen by</p><p>the significant change of the Au s, p<sub>y</sub>, d<sub>xx</sub><sub>-y</sub><sub>y</sub> and d<sub>yz</sub> LDOS for the bridge site (Figures 4 and 5). Several peaks of resonance appear on the Au p<sub>y</sub> LDOS (<xref ref-type="fig" rid="fig4">Figure 4</xref>(b)), the peaks increase in intensity and we can see in Figures 4(a) and 5(b) the strong shift of s and d<sub>yz</sub> centre of gravity, respectively. This is clearly due to the hybridization between 1s state of H and s-p-d Au states after H adsorption.</p></sec></sec></sec><sec id="s4"><title>4. Conclusion</title><p>We performed all-electron periodic DFT-GGA calculations of the adsorption of CH<sub>3</sub>O and H on Au(100). For methoxy radical, we found that the CH<sub>3</sub>O adsorption energy depends strongly on number of layers in the slab and increases with increases in number of layers in the slab. The electronic structure analysis of the adsorbed CH<sub>3</sub>O shows that there is a pronounced hybridization between the O 2s, 2p orbitals and d<sub>xz</sub>-band of the Au surface. For atomic hydrogen, the desorption is found to be favorable for the 4-layer slab. The local density of states curves around H of the adsorbed hydrogen show dispersed states below the metal Fermi level indicating an</p><p>H–Au mixing demonstrating a chemical interaction.</p></sec><sec id="s5"><title>5. Acknowledgements</title><p>PS Moussounda acknowledge the “Ecole de Chimie, Polym&#232;res et Mat&#233;riaux de Strasbourg (ECPM) and the “Universit&#233; de Strasbourg (UDS)” for their financial support and the “Laboratoire des Mat&#233;riaux, Surfaces et Proc&#233;d&#233;s pour la Catalyse” of the “Universit&#233; de Strasbourg (UDS)” for access to computational resources.</p></sec><sec id="s6"><title>REFERENCES</title></sec><sec id="s7"><title>NOTES</title></sec></body><back><ref-list><title>References</title><ref id="scirp.29334-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">C. Barnes, P. Pudney, Q. Guo and M. 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