<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">AJPS</journal-id><journal-title-group><journal-title>American Journal of Plant Sciences</journal-title></journal-title-group><issn pub-type="epub">2158-2742</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ajps.2013.42032</article-id><article-id pub-id-type="publisher-id">AJPS-27861</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject></subj-group></article-categories><title-group><article-title>
 
 
  Improvement of Detection Methods and Further Characterization of &lt;i&gt;Spiroplasma citri&lt;/i&gt;, the Causal Agent of Citrus Stubborn Disease in Egypt
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>ohamed</surname><given-names>Mannaa</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Anna</surname><given-names>Maria D’Onghia</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Khaled</surname><given-names>Djelouah</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Giuseppe</surname><given-names>Cavallo</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Franco</surname><given-names>Valentini</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib></contrib-group><aff id="aff2"><addr-line>CIHEAM-Mediterranean Agronomic Institute of Bari, Bari, Italy</addr-line></aff><aff id="aff1"><addr-line>CIHEAM-Department of Plant Pathology, Faculty of Agriculture, Cairo University, Giza, Egypt</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>mannaa_mohamed@yahoo.com(OM)</email>;</corresp></author-notes><pub-date pub-type="epub"><day>07</day><month>02</month><year>2013</year></pub-date><volume>04</volume><issue>02</issue><fpage>246</fpage><lpage>250</lpage><history><date date-type="received"><day>September</day>	<month>29th,</month>	<year>2012</year></date><date date-type="rev-recd"><day>November</day>	<month>3rd,</month>	<year>2012</year>	</date><date date-type="accepted"><day>November</day>	<month>10th,</month>	<year>2012</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Stubborn disease of citrus is one of the main causes of quality deterioration of citrus fruits in Egypt. The early detection and the molecular characterization of the causal agent are vital for revealing its real distribution and for management. In 2011, several samples were collected at different times of the year from stubborn suspected symptomatic trees within the main citrus growing area in Egypt, the Nile-delta region. After culturing the causal agent on artificial LD8 media from the field fresh samples, two new and improved methods of biological indexing were set up and compared with the traditional method in order to increase the detection efficiency by increasing the greenhouse transmission rate; which reached 85% with the new inverse inoculation method. Different PCR primer pairs were evaluated for their detection efficiency of the Egyptian Isolates of Spiroplasma citri and the most specific primer pair for these local isolates was determined. Improving the efficiency of biological indexing, along with determining the most specific and efficient PCR primer pair for the detection, will enhance and facilitate the citrus certification programs in Egypt, making them better tools for the early detection of stubborn disease. Furthermore obtained Egyptian isolates were characterized molecularly by the analysis of the obtained sequences showing close relationship with the Moroccan strain (GII3).
  
 
</p></abstract><kwd-group><kwd>Biological Indexing; &lt;i&gt;Spiroplasma citri&lt;/i&gt;; PCR; Citrus Stubborn Disease; Egypt</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Stubborn disease of citrus is one of the most important graft-transmissible diseases affecting citrus trees, particularly in warm climatic regions. It is caused by the prokaryote Spiroplasma citri, which is a plant pathogenic bacterium belonging to the class Mollicutes, a group of microorganisms phylogenetically related to low G-C content Gram-positive bacteria [<xref ref-type="bibr" rid="scirp.27861-ref1">1</xref>]. Spiroplasma citri was first reported in Egypt by Nour El-din in 1967 [<xref ref-type="bibr" rid="scirp.27861-ref2">2</xref>], who described the symptoms of the disease and suggested that the causal agent was graft-transmissible. Later, it was isolated and cultured [<xref ref-type="bibr" rid="scirp.27861-ref3">3</xref>].</p><p>Citrus is considered to be the main fruit crop in Egypt. The annual production of orange fruit, as the most important citrus variety, averages 3.7 million tons in 2011 [<xref ref-type="bibr" rid="scirp.27861-ref4">4</xref>], equaling 37.7% of the total fruit trees production. Citrus is produced mainly in the Nile Delta and valley (old lands), where nearly 71% of the total citrus area in this region is located [<xref ref-type="bibr" rid="scirp.27861-ref5">5</xref>]. In 2011, although production was forecast up in Egypt, exports were forecast downward due to uneven quality [<xref ref-type="bibr" rid="scirp.27861-ref4">4</xref>]. This drew attention to the epidemiology and the precise detection of the quality diseases in the area, such as citrus stubborn disease (CSD), which would help with the management of such disease.</p><p>It was noticed on several previous reports that the rate of greenhouse transmission of Spiroplasma citri, determined by the traditional method of biological indexing on the indicator plant, is relatively low and that the time required for the symptoms’ appearance on the indicator plant is long. This could be due to the low concentration of the pathogen in the budstick used specially during the cold seasons; therefore, the traditional method of biological indexing needs to be modified in such a way as to overcome the problems of the low rate of successful green-house transmission.</p></sec><sec id="s2"><title>2. Material and Method</title><sec id="s2_1"><title>2.1. Field Observation and Sampling</title><p>First, Observations in various fields were carried out at different times of the year (October 2010, May, July and August 2011), in order to check for symptoms of CSD. During the survey, only symptomatic samples were considered. Further, three symptomatic and off-season fruits were collected per suspected tree. A total of 130 samples were collected at different times of the year: 100 samples belonging to three orchards at Al Qalyoubia (Washington navel orange and sweet orange), and 30 samples belonging to the experimental orchard at the Faculty of Agriculture, Cairo University (Sweet orange).</p><p>The confirmation of the visual symptoms observed was carried out by culturing in LD8 media and microscopic observation of the S. citri.</p></sec><sec id="s2_2"><title>2.2. Isolation and Culturing</title><p>Petiole leaf midribs or fruit columella were excised, surface disinfested and diced with a sterile razor blade in 5 ml of LD8 broth medium [<xref ref-type="bibr" rid="scirp.27861-ref6">6</xref>], passed through a 0.45-&#181;m filter, and incubated at 30˚C. The presence of S. citri was confirmed after 3 to 14 days by examining 10 &#181;l of culture medium by dark-field microscopy at &#215;400 to 1000 for the presence of motile, helical spiroplasma.</p></sec><sec id="s2_3"><title>2.3. Biological Indexing</title><p>Three different methods of biological indexing (traditional method, inoculated indicator and inverse inoculation) were conducted and compared in order to evaluate the most efficient method and the most suitable conditions for transmission of the S. citri in the greenhouse. For that, young shoots with small emerging leaves from symptomatic trees were collected to be used in these trials.</p><p>Positive control trees, as well as negative control from healthy trees, were also included in the tests. Different aspects were evaluated, including the successful transmission rate and the time required for the appearance of stubborn symptoms on the indicator plant.</p><sec id="s2_3_1"><title>2.3.1. Traditional Method</title><p>As reported by Roistacher in 1991 [<xref ref-type="bibr" rid="scirp.27861-ref7">7</xref>], side grafting and leaf batch grafting were performed; collected budwood (stem pieces that were 5 - 7 mm in diameter from Stubborn infected trees) were side-grafted onto the one-yearold Madame Vinous seedlings (stubborn indicator plant). After sealing the graft with parafilm, and then labeling and enclosing it inside a plastic bag, the inoculated plants and the negative controls were maintained in a warm, conditioned greenhouse. After 1 - 2 weeks, the plastic bags were opened at the top to reduce humidity and observations of the symptoms were carried out weekly.</p></sec><sec id="s2_3_2"><title>2.3.2. Inoculated Indicator</title><p>Wood cuttings containing 4 - 6 nodes of the indicator “Madame Vinous” were firstly inoculated by chip budding or by leaf inoculation using the bark tissue collected from the sample sources; then, the inoculated indicator cuttings were grafted onto Sour orange rootstock (<xref ref-type="fig" rid="fig1">Figure 1</xref>) and enclosed inside a plastic bag in order to keep high humidity inside. The inoculated plants were maintained in a warm conditioned greenhouse. After ten days, the plastic bags were opened at the top in order to reduce the inside humidity, grafting success was evaluated and symptoms observations were carried out weekly.</p></sec><sec id="s2_3_3"><title>2.3.3. Inverse Inoculation</title><p>This new technique was set up in order to overcome the limitations of the traditional indexing related to the low concentration of S. citri in the stubborn infected sample and the long time needed for the diffusion of the pathogen in the plants. This method is the reverse of the inoculated indicator method, as it consists of the inoculation of a cutting from the sample to be tested with a bud from Madame Vinous sweet orange indicator, and then the obtained inoculated cutting was grafted onto sour orange rootstock (<xref ref-type="fig" rid="fig2">Figure 2</xref>). Symptoms observations were carried out weekly on leaves emerging from the indicator bud.</p><disp-formula id="scirp.27861-formula142786"><graphic  xlink:href="8-2600628\66f311fe-c77a-4027-a27c-97b166eac76b.jpg"  xlink:type="simple"/></disp-formula><p><xref ref-type="fig" rid="fig1">Figure 1</xref>. The Inoculated Indicator method.</p><disp-formula id="scirp.27861-formula142787"><graphic  xlink:href="8-2600628\86090157-776e-4c4e-94ef-c1d0842c6c54.jpg"  xlink:type="simple"/></disp-formula><p><xref ref-type="fig" rid="fig2">Figure 2</xref>. The Inverse Inoculation method.</p></sec></sec></sec></body><back><ref-list><title>References</title><ref id="scirp.27861-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">W. G. Weisburg, J. G. Tully, D. L. Rose, J. P. Petzel, H. Oyaizu, D. Yang, L. Mandelco, J. Sechrest, T. G. Lawrence, J. Van Etten, J. Maniloff and C. R. Woese, “A Phylogenetic Analysis of the Mycoplasmas: Basis for Their Classification,” Journal of Bacteriology, Vol. 171, No. 12, 1989, pp. 6455-6467.</mixed-citation></ref><ref id="scirp.27861-ref2"><label>2</label><mixed-citation publication-type="other" xlink:type="simple">F. 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