<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">AJMB</journal-id><journal-title-group><journal-title>American Journal of Molecular Biology</journal-title></journal-title-group><issn pub-type="epub">2161-6620</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ajmb.2012.24036</article-id><article-id pub-id-type="publisher-id">AJMB-23989</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject></subj-group></article-categories><title-group><article-title>
 
 
  Mutated elements of a complex promoter (Amh) can help to demonstrate the role of certain elements in controlling differential gene expression
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>avid</surname><given-names>W. Dresser</given-names></name><xref ref-type="aff" rid="aff1"><sub>1</sub></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff1"><label>1</label><addr-line>The Ashworth Laboratory, The University of Edinburgh, Edinburgh, UK</addr-line></aff><author-notes><corresp id="cor1">* E-mail:<email>david.dresser@btinternet.com</email></corresp></author-notes><pub-date pub-type="epub"><day>31</day><month>10</month><year>2012</year></pub-date><volume>02</volume><issue>04</issue><fpage>351</fpage><lpage>358</lpage><history><date date-type="received"><day>15</day>	<month>May</month>	<year>2012</year></date><date date-type="rev-recd"><day>26</day>	<month>June</month>	<year>2012</year>	</date><date date-type="accepted"><day>19</day>	<month>July</month>	<year>2012</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Amh is a single copy gene which is expressed in different ways during mammalian development. Several potential promoter elements have been identified using physiological experimentation and on the basis of interspecific sequence comparison. The role of putative promoter elements in controlling gene expression has been investigated by many workers over the last two decades and here by individually mutating each element. Expression was measured in vitro in cells of Sertoli descent by flowcytometry using EGFP as a reporter gene. Three lines of murine cells were used; pre- and post-pubertal Sertoli and granulosa cells. Differences between the three lines of cells, support the view that differentiation in this in vitro model system is likely to be at the level of available transcription factors at given points in development.
 
</p></abstract><kwd-group><kwd>Anti-Mullerian Hormone; SDM; Site Directed Mutation; Murine; SMAT-1; TM4; Sertoli Cell Lines; KK1; Granulosa Cell Line</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. INTRODUCTION</title><p>The level of expression of a gene involved in differentiation may vary with time and place. For example, in male mammals the gene for anti-Mullerian hormone (Amh; a member of the TGFbeta family) is expressed in the testis by Sertoli cells at high levels for a short while at the start of sexual differentiation; at lower levels up to the time of puberty; and at very low levels thereafter. In contrast in the ovary, granulosa cells which are derived from the same early stem cell stock as Sertoli cells, express Amh at a relatively low level from the time of puberty until the end of reproductive life.</p><p>In general a promoter consists of an ordered series of elements, each element specifically bound by a transcription factor (tf): each tf being eventually a constituent part of a functional spliceosome. The promoter can therefore be seen as a specific assembly template. With a complex promoter such as Amh, the ensuing level of gene expression is therefore likely to depend on the mix of tfs available at a given point in the differentiation pathway.</p><p>The role of individual elements of the mouse Amh promoter has been tested by mutating individual elements and using the modified promoters to drive the expression of a reporter gene (d2EGFP), measuring the level of expression by flowcytometry in cells of established lines derived from different points in the sexual differentiation pathway (see Appendix <xref ref-type="fig" rid="fig">Figure </xref>A1).</p><p>More specifically, in embryonic male mice there is a strong peak in Amh expression at 12 - 13 days post conception which decreases to a lower level and finally to exceedingly low levels at puberty [1-3]. The termination of Amh expression in the testis coincides with the appearance of the transcription factor GATA-1 [<xref ref-type="bibr" rid="scirp.23989-ref4">4</xref>]: it seems possible that there is a causal relationship between these events. In females, granulosa cells start to express Amh at a modest level, from about the time of puberty [<xref ref-type="bibr" rid="scirp.23989-ref5">5</xref>] until the end of active reproductive life. Appendix <xref ref-type="fig" rid="fig">Figure </xref>A1 illustrates where the lines of cells used here fit into the general scheme of sexual development in mice: each line adapted for growth in vitro but retaining properties of the originating stage of development [6-8]. In this study each of the eleven potential promoter elements has been individually mutated and the consequences for EGFP (as a surrogate for Amh) expression was measured. A reduction in expression shown by some promoters with a particular mutation, indicates that some elements play a significantly positive role in promoting EGFP expression in one line of cells but not necessarily in another and vice versa with the ablation of other element(s). However there is one element in particular (proxGata) which may plays a negative (repressive) role, since mutation leads to a significant increase in the expression index in all lines of cells tested. It is concluded that the Amh promoter has a wide range of possible levels and places of response when driving Amh expression in vivo.</p><p>The evidence obtained from in vitro experiments using the reporter gene d2EGFP supports the generally held view that differentiation largely depends on the availability of appropriate transcription factors.</p></sec><sec id="s2"><title>2. MATERIALS AND METHODS</title><p>Cells were grown adherent to standard tissue culture plastic-ware, in DMEM-F12 medium and glutamax with 10% foetal calf serum (FCS) with penicillin and streptomycin [<xref ref-type="bibr" rid="scirp.23989-ref9">9</xref>]. The AGM (aorta, gonad and mesonephros stem) cells were grown in the same medium but with 20% FCS and on plastic-ware which had been pretreated with gelatin [<xref ref-type="bibr" rid="scirp.23989-ref10">10</xref>]: about a third of the medium was preconditioned by 48 hours culture of AGM cells but with the exception specified in the legend to <xref ref-type="fig" rid="fig">Figure </xref>3. Expression assays were based on triplicate or quadruplicate cultures in Costar 24-well plates (1 − 3 &#215; 10<sup>5</sup> cells/well). This technique and the amounts of DNA used for transfection, together with details of the later flow cytometric analysis of EGFP expression and the maintenance of the cell lines, have been described previously [<xref ref-type="bibr" rid="scirp.23989-ref9">9</xref>]: the conditions for KK1 and AGM were as described previposly for SMAT.</p><p>An index of EGFP (green) fluorescence was measured using a flowcytometer monitoring red (texas red) and green (fluorescein) channels. This enables autofluorescence to be defined accurately to allow a window of EGFP specific fluorescence to be defined (see Appendix <xref ref-type="fig" rid="fig">Figure </xref>A2). The index is the product of the number of cells in the green window expressed as a percentage of total live cells and their geometric mean brightness (I = % xG<sub>m</sub>). The index for cells transfected with control DNA or not transfected, was &lt;1000 for SMAT cells.</p><p>Site directed mutagenesis (SDM), by double overlapping extension PCR [11,12] was used to change the nucleotide sequence of putative promoter elements. Overlapping forward and reverse oligo-nucleotide primers were prepared containing the desired mutated sequence (4 - 8 nt) nested in 5’ and 3’ non-mutated arms, each arm with an estimated Tm of 55˚ - 65˚. For the PCR the following ingredients were mixed at 0˚; 39 ml distilled water; 5 ml thermopol buffer (NEB); 1 ml of 100 mM MgSO4; 1 ml dNTP (containing 25 nMol of each); 1 ml of each oligo at 100 pMol/ml; 1 ml Deep Vent polymerase (NEB); and 1 ml (1 - 5 ng) of plasmid DNA template (d2EGFP; 2 hr intra cellular half-life; Invitrogen), containing an Amh promoter sequence immediately 5’ of the EGFP gene (see <xref ref-type="fig" rid="fig">Figure </xref>1). The PCR program was 94˚ for 2 min 30 sec followed by 12 to 17 cycles of 94˚ for 1 min; 60˚ for 1 min; 75˚ for 2 min per Kb template and finally 4˚ for up to 18 hrs. Methylated template DNA, synthesised in DH10B bacteria, was destroyed by 2 hrs digestion at 37˚ with DpnI. All mutated constructs were identified and verified by DNA sequencing.</p></sec><sec id="s3"><title>3. RESULTS</title><p>In <xref ref-type="fig" rid="fig">Figure </xref>2 the EGFP expression responses, driven by an unmodified Amh promoter and a minimal Tk (thymidine kinase) promoter, are compared in seven different lines of mouse cells. The results show that the overall responses in the AGM (aorta, gonad and mesonephros stem cells), TM4 (post-pubertal Sertoli) and 3T3 (fibroblast) cells, were weak, while that shown by SMAT cells (prepubertal Sertoli) was significantly stronger: in addition, in the SMAT cells, the Amh driven response, expressed as a percentage of the response driven by the Tk promoter, was very much greater. This data and data not included but mentioned in the legend to <xref ref-type="fig" rid="fig">Figure </xref>2, make it clear that AGM are ineffective in supporting Amh promoter driven expression. <xref ref-type="fig" rid="fig">Figure </xref>3 confirms that the Amh/Tk ratio for AGM8 cells is not altered by using SMAT cell conditioned medium rather than AGM8 conditioned medium, although the overall growth of the cells in the SMAT conditioned medium is slightly greater.</p><p>EGFP expression responses driven by variously modified Amh promoters in SMAT cells, are illustrated in <xref ref-type="fig" rid="fig">Figure </xref>4. For example, removal of the first 114 nt (–336 to –222; see <xref ref-type="fig" rid="fig">Figure </xref>1, leaving abbreviated promoter (tXWt; “trunc X”), do not have an effect on the response.</p><p>However removal of the first 179 nt (tY-Wt; trunc Y) resulted in a profound reduction in responsiveness, implying that a 65 nt stretch in the middle of the region designated the “Amh promoter” may play a crucial role in the action of the promoter. This critical stretch includes the potential elements distGata; distSF1; site A and site B: these elements have been mutated individually but not yet in combination. <xref ref-type="fig" rid="fig">Figure </xref>4 (and Appendix <xref ref-type="fig" rid="fig">Figure </xref>A2) also show that in SMAT cells, responses driven by five modified Amh promoters with mutated elements Sox and Se1 led to a reduction in expression, whereas mutated proxGata led to an increase in response. There was no effect with mutated site B or Se2.</p><p>In <xref ref-type="fig" rid="fig">Figure </xref>5 a limited range of responses to Amh promoters with mutated elements is compared between TM4 (post-pubertal) Sertoli cells and the equivalent response in SMAT (pre-pubertal Sertoli) cells. The values on the X-axes indicate that the overall level of response is much greater in SMAT cells, however in relative terms there are differences between TM4 and SMAT in their responses to mutated Amh promoters. Mutated distal and proximal SF1 elements led to a reduced response in SMAT but not in TM4. However mutated proxGata leads to a significant increase in response in both cell lines.</p><p>A more detailed comparison between KK1 (granulosa), TM4 and SMAT cells is shown in <xref ref-type="fig" rid="fig">Figure </xref>6, each of the eleven potential elements has been separately mutated. In this experiment mutated distSF1; site B; and Se1 elements led to a reduced response in KK1 cells, whereas Se1 and proxSF1 had a similar effect in SMAT cells. There was no significant reduction in response in TM4 cells, although mutated proxGata resulted in increased responsiveness in all cells.</p><p>In <xref ref-type="fig" rid="fig">Figure </xref>7 the array of “mutation” responses is compared again, this time just between KK1 and SMAT. While there are both similarities and possibly some differences with the results in <xref ref-type="fig" rid="fig">Figure </xref>6.</p><p>In SMAT cells mutation of proxSF1 and Se1 always leads to suppression of EGFP expression, while mutation of Sox, site B and distSF1 usually does so. Mutation of Site A, Se2, site C and Wt never cause any reduced expression in this in vitro system.</p></sec><sec id="s4"><title>4. DISCUSSION</title><p>4.1 It is assumed that the transcription factor (tf) specific sites (elements) of a promoter serve as a template for the ordered assembly of the functional components of the transcription mechanism (spliceosome?). This implies that to a great extent, specific control is at the level of tf availability at a given point in a differentiation process.</p><p>4.2 EGFP expression was measured by flow cytometry in cells transiently transfected, using LipofectAmine 2000 (Invitrogen), 48 hours previously with circular plasmid DNA constructs containing a d2EGFP gene driven by Amh promoters, some of which had been modified by specifically mutated elements (<xref ref-type="fig" rid="fig">Figure </xref>1). The efficiency of transfection is dependent on cell density, as outlined in the manufacturer’s instructions, and is a factor which is difficult to control: this may lead to a degree of dayto-day variation in the level of expression.</p><p>The pattern of EGFP expression responses, driven by an array of modified Amh promoters in which each of the eleven potential elements have been mutated, can be compared with each other and with the non-mutated control promoter and in addition with a third party control thymidine kinase (Tk) promoter. There are also comparisons between the 3 lines of cells used here. The array of responses were assayed in SMAT (pre-pubertal Sertoli), TM4 (post-pubertal Sertoli) and KK1 (granulosa) cells. Differences in transfectability require some form of normalisation for comparisons to be made between the different cell lines and <xref ref-type="fig" rid="fig">Figure </xref>6 illustrates such a comparison, where a representative sample of experiments is illustrated. It can be seen that the responsiveness of SMAT cells, to all transfected DNA constructs, is much greater than in TM4 cells: the level in KK1 cells is intermediate.</p><p>Mutation of proxSF1 results in a significantly reduced expression in SMAT but not in KK1 cells, while the opposite is true with a mutated site B. In relative terms there is no significant reduction in EGFP expression in TM4 cells due to mutation of any element.</p><p>4.3 In some cases, mutation of a potential element leads to an increase in EGFP expression. For instance, mutation of the proxGata site, situated close to the start of transcription [<xref ref-type="bibr" rid="scirp.23989-ref13">13</xref>], led to an increased expression in all three cell lines: this is possibly compatible with the observation that the termination of most of Amh expression in males coincides with the start of GATA-1 expression [<xref ref-type="bibr" rid="scirp.23989-ref4">4</xref>]: however it must be borne in mind that there is a possibility of internecine competition between members of the Gata family. GATA-1 could be functionally inert blocking access of active members of the family to the proxGata element: Gata-4 is known to play a positive role in granulosa cells [7,21].</p><p>Several elements named in <xref ref-type="fig" rid="fig">Figure </xref>1 have been identified and their potential role in Amh expression, either alone or in combination, have been demonstrated by several workers [14-18]. Koopman and co-workers [<xref ref-type="bibr" rid="scirp.23989-ref19">19</xref>] have shown that the Sox genes 8 and/or 9 product(s) and the SF1 gene product play a key role after binding to their respective elements. Similarly Arango et al. [<xref ref-type="bibr" rid="scirp.23989-ref20">20</xref>] showed that by simultaneously mutating the Sox and proxSF1 elements, it was possible to conclude that the Sox element binding tf plays a role in initiating Amh expression, while the proxSF1 binding tf is involved in quantitative control.</p><p>4.4 The results reported here are compatible with the view that Amh has a single multi-functional promoter. Alteration of individual transcription factor binding elements suggests that Sox, SF1 and Se1, play a significant role in controling EGFP (Amh) expression in prepubertal Sertoli cells, confirming in part the work of others [14-20].</p><p>The results presented in <xref ref-type="fig" rid="fig">Figure </xref>4 (and appendix <xref ref-type="fig" rid="fig">Figure </xref>A2) indicate that ablation of the first 179 nt of the Amh promoter (<xref ref-type="fig" rid="fig">Figure </xref>1; trunc Y) results in a profound reduction in EGFP expression. This stretch of the promoter includes distGata, distSF1, site A and site B. The nature of cooperation between two or more of these elements has not been resolved. <xref ref-type="fig" rid="fig">Figure </xref>4 also illustrates another important point: there is “day-to-day” variation in absolute levels of expression in vitro. This may be due to differences in cellular contiguity or physiology at the time of transfection and small differences in setting up the windows for the estimation of the response imdex by flowcytometric analysis [see Appendix <xref ref-type="fig" rid="fig">Figure </xref>A2]. Consequently absolute comparisons are restricted to experiments made with a single batch of cells and a single batch of flow cytometric analyses.</p></sec><sec id="s5"><title>5. ACKNOWLEDGEMENTS</title><p>I thank Drs. N. di Clemente and J.-Y. Picard (INSERM, Unit&#233; 493, Universit&#233; Paris XI) for providing the SMAT-1 cell line; Drs. Elaine Dzierzak (Rotterdam) and 0Alexander Medvinsky (ISCR, University of Edinburgh) for the AGM cell lines; Professor I. 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