<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">NR</journal-id><journal-title-group><journal-title>Natural Resources</journal-title></journal-title-group><issn pub-type="epub">2158-706X</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/nr.2024.155010</article-id><article-id pub-id-type="publisher-id">NR-133463</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Earth&amp;Environmental Sciences</subject></subj-group></article-categories><title-group><article-title>
 
 
  Post Cryopreservation Growth Kinetic and Photosynthetic Assessment of an Acid Tolerant Strain of &lt;i&gt;Stichococcus bacillaris&lt;/i&gt;
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Marzia</surname><given-names>Licata</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Luigi</surname><given-names>Marra</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Nunzia</surname><given-names>Nappi</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Elena</surname><given-names>Aurino</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Feliciana</surname><given-names>Oliva</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Antonino</surname><given-names>De Natale</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Donato</surname><given-names>Giovannelli</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Antonino</surname><given-names>Pollio</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib></contrib-group><aff id="aff2"><addr-line>Department of Chemical, Materials and Industrial Production Engineering, University of Naples &amp;amp;#8220;Federico II&amp;amp;#8221;, P.le V. Tecchio, Naples, Italy</addr-line></aff><aff id="aff1"><addr-line>Department of Biology, University of Naples &amp;amp;#8220;Federico II&amp;amp;#8221;, Naples, Italy</addr-line></aff><pub-date pub-type="epub"><day>10</day><month>05</month><year>2024</year></pub-date><volume>15</volume><issue>05</issue><fpage>130</fpage><lpage>148</lpage><history><date date-type="received"><day>6,</day>	<month>April</month>	<year>2024</year></date><date date-type="rev-recd"><day>26,</day>	<month>May</month>	<year>2024</year>	</date><date date-type="accepted"><day>29,</day>	<month>May</month>	<year>2024</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Preserving microbial diversity has become a strategic undertaking. Thus, &lt;i&gt;ex situ&lt;/i&gt; microalgal culture conservation results in strategic and functional resource in both biodiversity protection and application domains. Cryopreservation of microalgae has been practiced since the 1960s and is now considered the optimal preservation strategy. Furthermore, the overall monitoring during growth of cultures after freezing/thawing protocols was hardly investigated and there is poor evaluation related to preserve especially the photosystem apparatus. The present study focuses on &lt;i&gt;Stichococcus bacillaris&lt;/i&gt; as case study for short-term cryopreservation at &amp;#8722;80 &amp;#176;C storage. Various freezing pretreatments using cryoprotective agents, and two thawing methods were compared introducing a novel variable to evaluate viability recovery and assessing growth kinetics of cultures immediately after thawing and after a series batch cultivation. Photosynthetic rate and pigments assessment were proposed to evaluate hidden metabolic cell damage. Results underline cryoprotective agents can increase the kinetic recovery of preserved cells in terms of reduction of lag phase during batch cultivation tests: the use of dimethyl sulfoxide and glycerol granted a growth comparable to unpreserved cells when sudden thawing occurs after 24 hours of storage, but recovery after preservation is less sensitive to cryoprotective agents when gradual thawing and 1 month of storage is considered. However, cells are always able to restore their physiological pathways even without agents, so their kinetic effect has been proved and quantified. Interestingly, both the photosynthetic efficiency and the ratio between total chlorophyll and carotenoids are comparable (0.75 F&lt;sub&gt;v&lt;/sub&gt;/F&lt;sub&gt;m&lt;/sub&gt;, 2.2 &amp;#177; 0.25 g/g) to unpreserved cells and they are unsensitive to chosen agents, but the ratio between chlorophyll &lt;i&gt;a&lt;/i&gt; and chlorophyll &lt;i&gt;b &lt;/i&gt;was clearly altered (up to 10 times), suggesting that photoactive pigments relative proportions can result in similar growth kinetic performances. Long-term studies will be carried out to assess whether the differences found could cause chronic damage to photosystem efficiency of &lt;i&gt;S. bacillaris&lt;/i&gt; cultures.
 
</p></abstract><kwd-group><kwd>Microalgae</kwd><kwd> &lt;i&gt;Stichococcus bacillaris&lt;/i&gt;</kwd><kwd> Cryopreservation</kwd><kwd> Growth Kinetic</kwd><kwd> Photosynthetic Rate</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>The term microalgae is traditionally used to describe photosynthetic eukaryotic microorganisms, including cyanobacteria [<xref ref-type="bibr" rid="scirp.133463-ref1">1</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref2">2</xref>] . These microorganisms represent a significant biodiversity resource in terms of species number, morphology, biochemical pathways, but also in terms of ecological roles and applications [<xref ref-type="bibr" rid="scirp.133463-ref3">3</xref>] . All microalgae are autotrophs that photosynthesize through their pigments using them as light-harvesting molecules. Chlorophylls, carotenoids, and phycobilins are the three main classes of pigments that can be present in the photosynthetic apparatus. Chlorophyll a is present in all microalgae as a part of the reaction center pigment-protein complexes, and in light-harvesting antennae it is accompanied by chlorophyll b or chlorophyll c, especially in green algae. As photoprotectors, carotenoids are essential for protecting against excess irradiance, chlorophyll triplets, and reactive oxygen species. Phycobilins are the main antenna pigments of red algae and cyanobacteria. It is worth noting photosynthetic efficiency depends on all above-mentioned molecules [<xref ref-type="bibr" rid="scirp.133463-ref4">4</xref>] , and is responsible for nearly half the world’s primary production [<xref ref-type="bibr" rid="scirp.133463-ref5">5</xref>] .</p><p>In addition to pigments, other biomolecules highlight the significance microorganisms and their various applications, which are also of interest for commercial purposes. In the agricultural sector, microalgae produce bioactive substances such as phytohormones that support plant growth [<xref ref-type="bibr" rid="scirp.133463-ref6">6</xref>] . Microalgae are also utilized as a human food source for their high nutritional value due to their protein and vitamin content [<xref ref-type="bibr" rid="scirp.133463-ref7">7</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref8">8</xref>] , and can be used in a wide range of medical applications as useful sources of compounds with antioxidant, anticancer and anti- inflammatory properties [<xref ref-type="bibr" rid="scirp.133463-ref9">9</xref>] . Due to their lipid content and their adaptability to different environmental conditions, some microalgae can also provide a new source of biomass for fuel production with significant advantages [<xref ref-type="bibr" rid="scirp.133463-ref10">10</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref11">11</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref13">13</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref14">14</xref>] . For instance, the green unicellular microalga Stichococcus bacillaris is a potential candidate for commercial scale cultivations also devoted to biodiesel production and several biotechnological applications [<xref ref-type="bibr" rid="scirp.133463-ref15">15</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref16">16</xref>] . Clearly, stability and preservation of microalgae become relevant to exploit their biotechnological potential.</p><p>The preservation of the ecosystem and ecosystem services is the main priority in life science [<xref ref-type="bibr" rid="scirp.133463-ref17">17</xref>] . However, maintaining microbial resource in situ is extremely challenging. Thus, ex situ microalgal culture conservation results in strategic and functional resource in both biodiversity protection and application areas. In terms of biodiversity, conservation allows to preserve the genetic materials and the morphological functional characteristics of microalgae against contamination and environmental and ecological change that could cause the extinction of previously isolated organisms over time [<xref ref-type="bibr" rid="scirp.133463-ref17">17</xref>] . The World Federation for Culture Collections (https://wfcc.info/) is actively involved in supporting the establishment of culture collection and relative services. Strain conservation is also the first step for any kind of biotechnological exploitation [<xref ref-type="bibr" rid="scirp.133463-ref18">18</xref>] . However, ex situ maintenance is not necessarily successful. Preservation methodologies can create a stressful condition within the cells inducing a state of dormancy, or viable but not culturable, in some fraction of preserved cells according to Hoefman et al. [<xref ref-type="bibr" rid="scirp.133463-ref19">19</xref>] . Additionally, excessive costs for the required equipment remain one major problem and application limit.</p><p>To date, several methods are available for the maintenance of microalgal stock cultures: routine serial subculture, freeze-drying or lyophilization, and cryogenic storage [<xref ref-type="bibr" rid="scirp.133463-ref20">20</xref>] . Routine serial subculture is the earliest maintenance method. It is achieved through the continuous transfer of culture and allows the maintenance of actively growing cultures. However, this method requires routine manipulation of cultures by workers, which increases human error, contamination, and genetic drift [<xref ref-type="bibr" rid="scirp.133463-ref21">21</xref>] . Freeze-drying or lyophilization was therefore introduced. This method is commonly used to preserve bacterial cultures and has been successful in preserving certain strains of cyanobacteria, but there are numerous eukaryotic microalgae that cannot survive to lyophilization [<xref ref-type="bibr" rid="scirp.133463-ref22">22</xref>] .</p><p>Cryopreservation is now considered by most practitioners at the Biological Resource Centre (BRC) (https://www.oecd.org/) to be the optimal preservation strategy for microorganisms, which can vary from the use of a domestic freezer to ultra-low temperature storage below −196˚C using liquid nitrogen. The use of ultra-low temperature allows the long-term maintenance of cultures in a state of “suspended animation” with no significant reduction in viability after storage [<xref ref-type="bibr" rid="scirp.133463-ref23">23</xref>] , but the genetic profile after prolonged cryopreservation has not been yet investigated [<xref ref-type="bibr" rid="scirp.133463-ref20">20</xref>] . Cryopreservation of microalgae was performed since the 1960s providing several advantageous aspects in term of convenience for long-term stability [<xref ref-type="bibr" rid="scirp.133463-ref24">24</xref>] , but disadvantages cannot be underestimated. This method requires dedicated equipment and continuous liquid nitrogen<sub> </sub>supply for sample storage, resulting expensive particularly at the laboratory scale, but also for large scale production by companies. The liquid nitrogen market will increase up to a CAGR around 5.28% in 7 years up to 2029, and it is expected to reach 25.65 USD billion by 2029 (https://exactitudeconsultancy.com/it/). Additionally, the manipulation of liquid nitrogen poses potential health hazards. Moreover, several algal labs, which are also involved in biotechnology applications, are seeking strategies suitable for short-term conservation. They choose higher temperature of preservation ranging from −15˚C to −80˚C [<xref ref-type="bibr" rid="scirp.133463-ref23">23</xref>] . It should be noted that domestic freezers (−15˚C to −20˚C) can only be used for 24 hours of storage, after which there is a significant decrease in cell viability. In the study reported by [<xref ref-type="bibr" rid="scirp.133463-ref23">23</xref>] , loss of viability after 1 and 4 months of storage at −15˚C was demonstrated using an agar plate assay. This suggests that this approach is fundamentally unreliable. Several possibilities of microalgal culture storage at −80˚C freezer have been reported [<xref ref-type="bibr" rid="scirp.133463-ref23">23</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref25">25</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref26">26</xref>] .</p><p>The achievement of cryopreservation depends on microalgal species, cell concentrations, and the eventual addition of exogenous cryoprotective agents (CPAs). The study [<xref ref-type="bibr" rid="scirp.133463-ref27">27</xref>] showed that the highest recovery after preservation was obtained at a cell concentration below 10 &#215; 10<sup>6</sup> cells∙mL<sup>−1</sup>. Indeed, the cell viability lowered from ~37% to ~24% when cell concentration stored increases from 1 &#215; 10<sup>6</sup> to 10 &#215; 10<sup>6</sup> cells∙mL<sup>−1</sup>. Cryopreservation promotes ice crystal formation in the preserved cells subject to cryogenic temperatures causing cell damages [<xref ref-type="bibr" rid="scirp.133463-ref17">17</xref>] . Several reviews on cryoprotective agents have reported that the use of cell- penetrating agents can lead to increased cell viability. However, it should be noted that the addition of cryoprotective agents in cell cultures may also result in damage over time. Kugler et al. [<xref ref-type="bibr" rid="scirp.133463-ref25">25</xref>] showed that the vegetative cells of Lobosphaera incisa exhibited tolerance to extreme low temperature without cryoprotective agents’ addition, Bui et al. [<xref ref-type="bibr" rid="scirp.133463-ref27">27</xref>] reported very low viabilities of some green algae after preservation without pretreatment with CPAs compared to others with CPAs, proving these can help cells growth recovery. Ice crystal formation can be avoided using dimethyl sulfoxide (DMSO) and methanol, while sugars’ addition can lower the water freezing point [<xref ref-type="bibr" rid="scirp.133463-ref27">27</xref>] . Successful cryopreservation also depends on the methods of thawing to minimize photooxidative damage [<xref ref-type="bibr" rid="scirp.133463-ref28">28</xref>] . After storage at −80˚C in a freezer, both transferring cultures to +4˚C reported by [<xref ref-type="bibr" rid="scirp.133463-ref25">25</xref>] , and immersing cultures into a 35˚C water bath, as reported by [<xref ref-type="bibr" rid="scirp.133463-ref26">26</xref>] , are efficient methods for preserving cultures. However, it is important to note that there is currently no standardized operational protocol for cryopreservation of cultures. In addition, beside the method of preserving, many other aspects may influence the success of preservation [<xref ref-type="bibr" rid="scirp.133463-ref19">19</xref>] , representing an empirical research field. Comparing or applying data from literature results very hard. For instance, the cells adaptation to fresh medium after thawing, the certainty of cells growth stability, and photosynthetic apparatus efficiency have not been completely proven in every case study [<xref ref-type="bibr" rid="scirp.133463-ref17">17</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref26">26</xref>] .</p><p>The present work aims to introduce the attempt to cryopreserve a strain of Stichococcus bacillaris N&#228;geli belonging to The Algal Collection at the University of Naples Federico II (ACUF) [<xref ref-type="bibr" rid="scirp.133463-ref29">29</xref>] . ACUF is an acknowledged thermo- acidophilic microalgae collection resulting from the exploration of several extreme sites which led to isolate strains belonging to Chlorophyta, Rhodophyta and Bacillariophyceae [<xref ref-type="bibr" rid="scirp.133463-ref30">30</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref31">31</xref>] . Stichococcus is a genus of green algae that is widespread across several continents and tolerant of changes in temperature, salinity, and pH [<xref ref-type="bibr" rid="scirp.133463-ref32">32</xref>] . In ACUF are presently maintained 16 strains of S. bacillaris, also isolated from italian low pH environments (pH &lt; 3.0), that represent a unique pool of biodiversity deserving tailored strategies of preservation.</p><p>Strains of Stichococcus bacillaris have also been isolated from Antarctica, showing a good adaption to extremely low temperatures and making it a potential candidate for cryopreservation [<xref ref-type="bibr" rid="scirp.133463-ref33">33</xref>] . It is worth noting that Holm-Hansen [<xref ref-type="bibr" rid="scirp.133463-ref34">34</xref>] reported a historical attempt to preserve S. bacillaris at ultra-low temperature below −196˚C, dating back to the mid-1960’s. Results suggest that S. bacillaris can survive up to 19 times the freezing and thawing cascade with no viability losses. However, no kinetic data or photosystem apparatus assessment has been performed, particularly considering the long-term growth, resulting in a lack of knowledge about this strain behavior after freeze storage. Nowadays, this microalga is usually cryopreserved by several microalgal collection, but no data have been published. However, to the best of the authors’ knowledge, the overall monitoring during growth of cultures after freezing/thawing protocols was hardly investigated. The most common method of assessing the viability of a cryopreserved microalgae culture is based on the use of vital dyes such as Trypan blue, which can only penetrate severely damaged cells [<xref ref-type="bibr" rid="scirp.133463-ref35">35</xref>] . However, this method does not provide information on the metabolic state of the cells after recovery from ultra-low temperatures.</p><p>In this study, short-term cryopreservation of S. bacillaris at −80˚C has been assessed. Different pre-freezing treatments with cryoprotectants, and two thawing methods were compared by measuring viability recovery and assessing growth kinetic of S. bacillaris immediately after thawing and after a series batch cultivation cycles, and a new kinetic variable has been set up to this aim. The evaluation of growth and photosynthetic rate kinetics of microalgal cultures after cryopreservation is proposed here as a more effective method to verify not only the viability of a culture, but also to evaluate hidden metabolic cell damage.</p></sec><sec id="s2"><title>2. Materials and Methods</title><sec id="s2_1"><title>2.1. Stichococcus bacillaris N geli and Culture Conditions</title><p>Stichococcus bacillaris N geli (Trebouxiophyceae, Chlorophyta) (ACUF_102) has been retrieved from The Algal Collection at the University of Naples Federico II (ACUF). The autotrophic cultivation has been carried out under axenic conditions and according to the operating condition suggested by ACUF instructions (http://www.acuf.net/). The cultivation takes place in a liquid batch system (50 mL operating volume flasks) with Bold’s Basal medium (BBM) with a gentle mixing, a 12/12 h light/dark photoperiod and the light intensity set at 80 μmol<sub>Ph</sub>∙m<sup>−2</sup>∙s<sup>−1</sup> (measured at lid height and provided by fluorescence tubes, L36W/865 Lumilux<sup>&#174;</sup> Cool Daylight, Osram GmbH, Germany) white LED lamps. Temperature has been kept constant at 25˚C &#177; 1˚C.</p><sec id="s2_1_1"><title>2.1.1. Cultivation Monitoring</title><p>Biomass concentration was monitored daily and spectrophotometrically measured (ONDA spectrophotometer) at a wavelength of 550 nm. A calibration curve was established to determine the linear coefficient between optical density and mass concentration. In each growth test, cultures were inoculated with fixed initial cell concentrations, and monitored until reaching the steady state of the growth phase.</p></sec></sec><sec id="s2_2"><title>2.2. Cryopreservation Strategies</title><sec id="s2_2_1"><title>2.2.1. Freezing Treatments</title><p>Three different treatments were evaluated to determine the optimal preservation conditions for S. bacillaris. During the first growth cycle, cells were harvested in their exponential phase (approximately 5 &#215; 10<sup>7</sup> cells∙mL<sup>−1</sup>) and cryopreserved using the following strategies. Microalgae samples without cryoprotective agents (CPAs) acted as a cryopreserved untreated control (untreated). A second treatment (D) involved the addition of DMSO (Sigma-Aldrich, Saint Louis, USA) to microalgal sample, reaching a final concentration of 5% (v/v) DMSO in culture medium according to the range reported by [<xref ref-type="bibr" rid="scirp.133463-ref27">27</xref>] . The third evaluation (DG) was prepared by adding two cryoprotective agents to the microalgal sample: DMSO at a concentration of 5% (v/v) in the culture medium, and glycerol (AppliChem GmbH, Darmstadt, Germany) at a concentration of 5% (v/v) in the culture medium. Cryoprotective solutions were sterilized through a 0.22 &#181;m membrane filter (Ministart, Sartorius Stedim Biotech GmbH, Germany). Each treatment strategy was prepared dispensing microalgal sample up to a final concentration of 5 &#215; 10<sup>6</sup> cells∙mL<sup>−1</sup> into cryovials similar to what suggested by [<xref ref-type="bibr" rid="scirp.133463-ref36">36</xref>] . All treatments (conducted in triplicates) were then placed in a Mr. Frosty<sup>TM</sup> (Nalgene NUNC International, USA) according to manufacturer’s instructions, with the addition of 250 mL of isopropanol. After a minimum of 4 hours, the vials were quickly moved to a final box container to storage samples at the same temperature. The frozen samples were thawed after 24 hours and 1 month.</p></sec><sec id="s2_2_2"><title>2.2.2. Thawing Methods</title><p>After storage, all frozen samples were thawed with two different methods through several steps. The first method, known as “sudden thawing” (Stw), involved an immediate thaw. Cryovials containing the frozen microalgal cultures were removed from the −80˚C storage and then immediately placed in floating holders immersed into a 35˚C water bath for 3 minutes at dark to let ice melt. Thus, samples were incubated for 1 hour in darkness to minimize any photooxidative damage [<xref ref-type="bibr" rid="scirp.133463-ref26">26</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref28">28</xref>] . Afterward, the cryovials were centrifuged at 10.000 rpm for 20 minutes. The supernatant was discarded to remove any CPAs that might be toxic for thawed cells. Anyway, also untreated preserved control was washed to compare the procedure. The fresh medium was used to resuspend the samples and used as inocula for growth tests as reported in section 2.1. To assess the long- term effect of preservation, a repeated batch cultivation has been carried out. The second method was “gradual thawing” (Gtw) which involved a gentler thawing process. Cryovials with the frozen samples were transferred from −80˚C storage to −20˚C freezer for 1 hour, and then to +4˚C storage overnight. After storage, the samples were centrifugated and processed according to the steps described in the “sudden thawing” method above.</p></sec></sec><sec id="s2_3"><title>2.3. Viability and Photosynthetic Assessment</title><p>To evaluate cultures viability and perform photosynthetic efficiency, both the unpreserved (control), and cryopreserved cultures have been harvested in their exponential phase. The following viability tests have been performed [<xref ref-type="bibr" rid="scirp.133463-ref17">17</xref>] .</p><sec id="s2_3_1"><title>2.3.1. Trypan Blue Assay, and Chlorophyll a Autofluorescence Measurement</title><p>Cell cultures viability and morphology were assessed by a Typan blue permeabilization assay [<xref ref-type="bibr" rid="scirp.133463-ref35">35</xref>] . The cells were mixed with Trypan blue dye (Sigma-Aldrich, Germany) at a ratio of 1:1 and incubated for 1 hour to allow for eventual dye permeabilization in the nonviable cells. Aliquot of this mixture was observed using the optical microscope approach. Additionally, the chlorophyll a autofluorescence of microalgal cells was inspected under the fluorescence microscope using a epifluorescence microscope Nikon Eclipse E800 [<xref ref-type="bibr" rid="scirp.133463-ref37">37</xref>] . Specifically, these analyses were carried out immediately after thawing.</p></sec><sec id="s2_3_2"><title>2.3.2. Cell Cultures Recovery</title><p>“Recovery from preservation” (RecP) has been assessed as a “ad hoc” kinetic variable. Briefly, culture concentrations were monitored up to the steady state of growth, resulting in growth curves for each freezing/thawing strategy. Thus, the overall biomass growth rate (μ<sub>ov</sub>), the growth lag (φ<sub>lag</sub>) and the biomass growth rate (μ<sub>g</sub>) after the end of lag phase has been calculated according to the following equations:</p><p>μ o v = ( Δ X o v / Δ t o v ) / X &#175; (1)</p><p>μ g = ( Δ X g / Δ t g ) / X &#175; g (2)</p><p>φ l a g = μ o v / μ g (3)</p><p>where ΔX<sub>ov</sub> represents the difference between biomass concentration (expressed as g/L) at the last checked point of exponential phase and the inoculum time, and Δt<sub>ov</sub> is the relative difference; ΔX<sub>g</sub> represents the difference between biomass concentration at last and the first checked points of exponential phase and Δt<sub>g</sub> is the relative difference. Both control and preserved cultures were assessed using these parameters. Growth lag (φ<sub>lag</sub>) is a kinetic parameter that is defined as the ratio between the overall and exponential specific growth rate, thus it is a variable able to assess the impact of lag phase on the overall growth time. Clearly, it’s limited to [0, 1] interval: increasing φ<sub>lag</sub> means an increase of the duration of the lag phase, underlining the time need to adapt and restore cell metabolic pathway.</p><p>Specifically for the freezing samples, the growth lag was utilized to evaluate the adaptation of the culture immediately after storage. In order to compare this phase between preserved samples and control, the kinetic variable RecP was calculated with following equation:</p><p>RecP = φ l a g _ p r e s e r v e d / φ l a g _ c o n t r o l . (4)</p><p>RecP has been defined to assess the kinetic effect of preservation: briefly, it can range from 0 (no growth occurred for preserved cells) to 1 (preserved cell growth comparable to unpreserved one). In this interval, the higher the RecP the better is the kinetic response of cells to preservation strategy. Clearly, a RecP larger than 1 is unfeasible. The sensitivity limit of RecP definition is related to the time scale of test. Clearly, the smaller the scale, the more rigorous the result. In this work, microalgae growth temporal scale has to be considered, thus day was chosen as magnitude order since their low duplication time in autotrophy cultivation system. As reported in literature, microalgae cell concentrations are generally checked daily, thus the “day-scale” has been considered consistent with the aim of this kinetic variable.</p></sec><sec id="s2_3_3"><title>2.3.3. PAM Fluorometry Assay</title><p>The photosynthetic efficiency of each microalgal culture was evaluated in their exponential phase using a FMS2 Hansatech PAM fluorometer. The samples were subjected to a dark adaptation of 30 minutes. Afterward, they were transferred into a 4 mL quartz glass cuvette with a magnetic micro-agitator, ensuring homogeneity during the tests [<xref ref-type="bibr" rid="scirp.133463-ref38">38</xref>] . Saturating light was applied to measure F<sub>0</sub> (minimum fluorescence yield) and F<sub>m</sub> (maximum fluorescence yield), thus maximum quantum efficiency of photosystem II was calculated according to the following equation:</p><p>F v / F m = ( F m − F 0 ) / F m . (5)</p><p>A sequence of 9 increasing actinic irradiance, ranging from 36.56 &#181;Ein to 1213 &#181;Ein, was set to evaluate F<sub>s</sub> (Fluorescence yield in the steady-state in light- adapted samples), F ′ 0 (Minimum fluorescence yield in light-adapted samples), F ′ m (Maximum fluorescence yield in light-adapted samples). Before each actinic irradiance, the samples were incubated at dark for 2 minutes. Relative electron transport rate (rETR) was calculated with following equation:</p><p>rETR = ( F ′ m − F ′ 0 ) / F ′ m ⋅ PPFD (6)</p><p>where F ′ m − F ′ 0 represents the PS II operating efficiency and estimates the efficiency at which light absorbed by PS II is used, and PPFD is the photosynthetically active photon flux density (mol quanta m<sup>−2</sup>∙s<sup>−1</sup>) [<xref ref-type="bibr" rid="scirp.133463-ref39">39</xref>] .</p></sec><sec id="s2_3_4"><title>2.3.4. Oxygen Evolution Measurement</title><p>The photosynthetic performance of each sample was also evaluated by measuring the rate of oxygen evolution in response to varying light intensities [<xref ref-type="bibr" rid="scirp.133463-ref4">4</xref>] . Oxygen exchange rates were determined with an Oxygraph Clark-type oxygen electrode (Hansatech, King Lynn, UK) at 25˚C according to the sample cultivation temperature. After adaptation in darkness for 30 minutes, the samples were dispensed into device with a magnetic micro-agitator to homogenize the samples during the test. A sequence of 10 increasing light intensity, ranging from 18.8 &#181;Ein to 1388 &#181;Ein, was used to generate a light-response (P/I) curve. In this curve, P (nmol<sub>Oxygen</sub>∙mg<sub>biomass</sub><sup>−1</sup>∙min<sup>−1</sup>) represents the rate of oxygen production, and I (&#181;Ein) represents the applied light intensity. From the above-mentioned plot, two critical parameters were calculated: the maximum light utilization efficiency (α) and the maximum oxygen production rate (P<sub>max</sub>). α was calculated as the slope of the initial linear portion of the curve, while P<sub>max</sub> was assessed as the maximum value reached during the plateau.</p></sec><sec id="s2_3_5"><title>2.3.5. Pigments Assessment</title><p>The biomass obtained in the exponential phase was characterized in term of chlorophyll a, chlorophyll b, and total carotenoids concentrations. Pigments quantification was performed suspending 1 g<sub>DW</sub>/L of biomass in pure methanol. The samples prepared were incubated at 37˚C overnight with slowly shaking in darkness. The pigments concentrations were quantified spectrophotometrically measuring the absorbance at 470 nm, 646 nm, and 663 nm, and using the following equations [<xref ref-type="bibr" rid="scirp.133463-ref40">40</xref>] :</p><p>C h l a ( mg / L ) = 16.72 ∗ A 663 − 9.16 ∗ A 646 (7)</p><p>C h l b ( mg / L ) = 34.04 ∗ A 646 − 15.28 ∗ A 663 (8)</p><p>C a r o t t o t ( mg / L ) = ( 1000 ∗ A 470 − 1.63 ∗ C h l a − 104.9 ∗ C h l b ) / 221 . (9)</p><p>Additionally, the ratio between chlorophyll a and chlorophyll b and the ratio between photoactive pigments (chlorophyll a and chlorophyll b) and photoprotective pigments (total carotenoids) have been evaluated to assess the overall status of photosystem.</p></sec></sec><sec id="s2_4"><title>2.4. Statistical Analysis</title><p>Each test was conducted in three independent biological replicates, and the average values were reported. The datasets are expressed as mean (SD) to estimate the error.</p><p>Error propagation has been considered for all the variables involving ratio of measured variables. Each batch concentration has been considered as a single test before error calculation.</p></sec></sec><sec id="s3"><title>3. Results and Discussion</title><sec id="s3_1"><title>3.1. Effect of Cryopreservation on Stichococcus bacillaris Cell Morphology and Viability</title><p>Different pretreatments were compared with freezing and thawing strategies to assess the best conditions for Stichococcus bacillaris. Cryopreservation methods are considered a stress condition for low temperature utilized to storage cells. Cryogenic temperature can promote ice crystal formation in the cells that have the potential to cause structural damage leading cell death or its morphology alteration: the use of cryoprotective agents can help the achievement of storage [<xref ref-type="bibr" rid="scirp.133463-ref17">17</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref41">41</xref>] . The primary aim of preserving cells is to maintain their morphology [<xref ref-type="bibr" rid="scirp.133463-ref28">28</xref>] . The effects of short-term cryopreservation tested are illustrated in <xref ref-type="fig" rid="fig1">Figure 1</xref>, where only one representative example from each treatment is shown. As expected, frozen S. bacillaris cells were able to survive all the freezing and thawing strategies tested [<xref ref-type="bibr" rid="scirp.133463-ref34">34</xref>] [<xref ref-type="bibr" rid="scirp.133463-ref42">42</xref>] . Notably, the absence of Trypan blue dye uptake by the preserved cells was detected and shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>(a), and no change in cell morphology was detected by light microscopy observations comparing to the control shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>(c). Furthermore, chlorophyll autofluorescence provides a direct reflection of the photochemical system’s functionality [<xref ref-type="bibr" rid="scirp.133463-ref4">4</xref>] . As shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>(b), the chlorophyll a autofluorescence signal of the preserved cells was equal to the control reported in <xref ref-type="fig" rid="fig1">Figure 1</xref>(d). This means that the vitality of the cells is maintained even after thawing. However, cells can enter a state of dormancy where they are viable but not culturable [<xref ref-type="bibr" rid="scirp.133463-ref19">19</xref>] . Therefore, in addition to assess cell viability, the evaluation of cultivability must also be taken in consideration.</p></sec><sec id="s3_2"><title>3.2. Growth Recovery from Different Preservation Strategies</title><p>In the present study, recovery from preservation was assessed to evaluate culture adaptation both immediately after thawing and in successive batch culture growth tests. It was useful to compare different freezing treatments/thawing strategies. The recovery of cultures immediately after 24 hours and 1 month of storage is shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>.</p><p>As depicted in <xref ref-type="fig" rid="fig2">Figure 2</xref>(a), after 24 hours, the best recovery equivalent to 1 is obtained in the cultures preserved with DMSO and glycerol treatment and processed with a sudden thawing (DGStw). The same freezing treatment resulted in a 20% lower recovery when gradual thawing was employed (DGGtw).</p><p>Moreover, the freezing treatment with only DMSO and sudden thawing (DStw) showed a better recovery than all the treatments with gradual thawing. This means that an immediate thaw at 35˚C could avoid any photooxidative damage leading to immediate recovery of cultures [<xref ref-type="bibr" rid="scirp.133463-ref28">28</xref>] . Thus, sudden thawing can be considered the preferential strategy. It is worth noting that a satisfactory preservation recovery (20% less) was found for the cryopreserved untreated sample (U) with both thawing methods. Although only the growth retardation of DGStw is similar to the control, other cultures show a significant recovery, proving that it is possible to avoid the use of cryoprotectants for this short-term preservation, according to another study on different microalgae reported by [<xref ref-type="bibr" rid="scirp.133463-ref25">25</xref>] .</p><p>Similar trends were observed after 1 month of storage as shown in <xref ref-type="fig" rid="fig2">Figure 2</xref>(b): although none of the preserved samples achieved uniform recovery, and the cryopreserved untreated controls obtained approximately 20% lower recovery, the addition of cryoprotectants results in a greater recovery in both the sudden and thawing methods. Thus, for this storage time there is no significant difference between the two thawing methods, but there is an advantage using the cryoprotective agents. In particular, viability levels assessed on the basis of recovery from storage are, as expected, slightly reduced from 24 hours to 1 month of storage, suggesting that recovery is dependent on storage time. Kapoore et al. [<xref ref-type="bibr" rid="scirp.133463-ref23">23</xref>] showed that the viability level of Chlorella vulgaris, in this case expressed as colony formation on agar, decreased by 20% from 24 hours storage to 1 month and then 4 months storage at −80˚C. A more detailed study of the immediate effects of cryopreservation strategies is required to evaluate the long-term preservation of Stichococcus bacillaris.</p><p>Therefore, the recovery from preservation was also estimated in consecutive batch cultures for all strategies. All cultures obtained a recovery equivalent to 1 (data not shown). This means cryoprotective agents can increase the kinetic recovery of preserved cells in terms of reduction of lag phase during the first batch cultivation tests immediately after the thawing. However, all preserved cell cultures are always able to restore their growth kinetic with a complete recovery. It is mandatory to underline the strategy optimization should be proved considering other parameters, including cost analysis for materials, and the consequences</p><p>of cryoprotective agents’ addition over time. In conclusion, since the repeated batch cultivation results in a uniform recovery for each preservation strategy, the untreated sample can be considered a viable option for freeze storage up to 1 month.</p></sec><sec id="s3_3"><title>3.3. Photosynthetic Efficiency and Oxygen Production Rate Reestablishing</title><p>In photosynthesis, light energy is captured in two photoreactions carried out by two pigment-protein complexes: Photosystem II (PS II) and Photosystem I (PS I), which operate in series and are linked by an electron chain. The maximum quantum efficiency of PSII (F<sub>v</sub>/F<sub>m</sub>) is used as a convenient estimate of the photosystem efficiency and is shown in <xref ref-type="fig" rid="fig3">Figure 3</xref>. All the various samples subjected to different freezing and thawing treatments exhibited F<sub>v</sub>/F<sub>m</sub> values comparable to the control. Data show that there is no significant difference between different storage times. In addition, the F<sub>v</sub>/F<sub>m</sub> values range from 0.7 to 0.8 in accordance with the ratio value in dark-adapted green microalgae reported by [<xref ref-type="bibr" rid="scirp.133463-ref4">4</xref>] . In addition, supporting data was provided by [<xref ref-type="bibr" rid="scirp.133463-ref25">25</xref>] , who reported a functional recovery of PS II in Lobosphaera incisa after freezing storage at −80˚C, after three days from thawing, pairing present work results since PSII assay has been performed during exponential phase of batch culture. The photosynthetic capacity to utilize absorbed light energy through electron transport rate can be calculated as rETR (relative electron transport rate) as a function of increasing light intensity. Similar to the F<sub>v</sub>/F<sub>m</sub> results, all rETR values obtained from different treated samples are comparable and similar to the control (data not shown). These results demonstrated the ability of the preserved cultures to perform photoreactions without significant damage and all cryopreservation strategies had no effect on photosynthetic efficiency up to 1 month of storage.</p><p>The evaluation of the oxygen production rate, assessed by the estimation of α and P<sub>max</sub> values reported in <xref ref-type="table" rid="table1">Table 1</xref>, provides further confirmation of these results. Both after 24 hours and after 1 month of storage, the overall maximum light utilization efficiency is comparable in all samples analyzed. Similarly, the cell cultures reach a comparable value of the maximum oxygen production rate in all stored samples. Although the oxygen evolution rate and photosynthetic efficiency was unsensitive to different preservation strategy, their correlation is not necessarily granted: in fact, a decrease in maximum oxygen rate can be paired with a constant electron transfer rate when the damage to photosystem is not directly related to the electron transfer, as clearly described by [<xref ref-type="bibr" rid="scirp.133463-ref36">36</xref>] . Clearly, an electron transfer rate drop surely results in a lower oxygen evolution. In this work, the oxygen evolution has been considered comparable and consistent with the promising results of recovery from preservation assessment (Section 3.2).</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Evaluation of oxygen production rate</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="2"  >Preservation time</th><th align="center" valign="middle"  rowspan="2"  >Sample</th><th align="center" valign="middle"  colspan="2"  >Oxygen evolution parameters</th></tr></thead><tr><td align="center" valign="middle" >The maximum light utilization efficiency (α)</td><td align="center" valign="middle" >The maximum oxygen production rate (P<sub>max</sub>)</td></tr><tr><td align="center" valign="middle" >-</td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >0.13</td><td align="center" valign="middle" >54.22</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >Untreated Stw</td><td align="center" valign="middle" >0.17</td><td align="center" valign="middle" >47.04</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >DMSO Stw</td><td align="center" valign="middle" >0.22</td><td align="center" valign="middle" >59.16</td></tr><tr><td align="center" valign="middle" >24 hours</td><td align="center" valign="middle" >DMSO + Glycerol Stw</td><td align="center" valign="middle" >0.15</td><td align="center" valign="middle" >44.09</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >Untreated Gtw</td><td align="center" valign="middle" >0.19</td><td align="center" valign="middle" >57.45</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >DMSO Gtw</td><td align="center" valign="middle" >0.20</td><td align="center" valign="middle" >55.86</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >DMSO + Glycerol Gtw</td><td align="center" valign="middle" >0.26</td><td align="center" valign="middle" >65.09</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >Untreated Stw</td><td align="center" valign="middle" >0.16</td><td align="center" valign="middle" >50.57</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >DMSO Stw</td><td align="center" valign="middle" >0.14</td><td align="center" valign="middle" >36.84</td></tr><tr><td align="center" valign="middle" >1 month</td><td align="center" valign="middle" >DMSO + Glycerol Stw</td><td align="center" valign="middle" >0.14</td><td align="center" valign="middle" >50.32</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >Untreated Gtw</td><td align="center" valign="middle" >0.14</td><td align="center" valign="middle" >52.89</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >DMSO Gtw</td><td align="center" valign="middle" >0.17</td><td align="center" valign="middle" >46.74</td></tr><tr><td align="center" valign="middle" ></td><td align="center" valign="middle" >DMSO + Glycerol Gtw</td><td align="center" valign="middle" >0.17</td><td align="center" valign="middle" >47.65</td></tr></tbody></table></table-wrap></sec><sec id="s3_4"><title>3.4. Pigment Mass Fraction Results</title><p>A further evaluation of the condition of the preserved microalgal cultures was assessed by pigments analysis. The results of the pigment mass fraction of the biomass are shown in <xref ref-type="fig" rid="fig4">Figure 4</xref>. As depicted in <xref ref-type="fig" rid="fig4">Figure 4</xref>(a), there were no substantial changes observed in carotenoids and chlorophyll a content after 24 hours of storage for both the untreated preserved sample and the sample thawed using both methods. Similarly, the chlorophyll b content was unaffected in the untreated sample thawed by sudden methods (UStw) and slightly increased in the same sample thawed by gradual methods (UGtw). In general, cryopreservation strategies without cryoprotectants did not alter pigments content. However, a slight increase in chlorophyll a and a proportional increase in chlorophyll b were observed in both DStw and DGtw. No significant change was observed in carotenoid production. This indicates that the utilization of DMSO as a cryoprotective agent results in an increase in total chlorophyll content, while the thawing method does not impact the chlorophyll content. Instead, when both cryoprotectants, DMSO and glycerol, are used, the difference in the thawing method becomes relevant: sudden thawing leads to an increase in chlorophyll b, whereas gradual thawing leads to a 50% increase in chlorophyll a and a decrease in chlorophyll b.</p><p><xref ref-type="fig" rid="fig4">Figure 4</xref>(b) shows that after 1 month of storage, chlorophyll a content was unaffected in all preserved cultures, except in DGtw where a slight increase was observed. Conversely, chlorophyll b content was drastically reduced in all cultures. In particular, the chlorophyll b content in DGGtw was the same after 24 hours and 1 month of storage. The carotenoid content was not affected in any of the cases analyzed.</p><p>Obtained results in pigments content could be related to the growth kinetic recovery discussed in the Section 3.2. It is worth noting that the observed decrease in chlorophyll b content was obtained in the preserved samples that showing a growth retardation immediately after thawing with a recovery from preservation (RecP) less than 1. These results suggest a correlation between the chlorophyll b content and the kinetic performance. Thus, detailed investigations are mandatory to assess the significance of this correlation.</p><p>A more detailed effect on pigments is shown in <xref ref-type="fig" rid="fig4">Figure 4</xref>(c) and <xref ref-type="fig" rid="fig4">Figure 4</xref>(d), where the ratio between chlorophyll a and chlorophyll b (Chl a/Chl b) and the ratio of total chlorophyll (Chl Tot) to carotenoids (Carot) are reported. Even if</p><p>after 24 hours of storage the Chl a/Chl b ratio is comparable, except for DGGtw (drastically higher), both for the increase of chlorophyll a and the decrease of chlorophyll b as reported above, after 1 month of storage the ratio between chlorophyll a and chlorophyll b is increased in all the samples analyzed, especially when using only DMSO as cryoprotectant. In addition, for all treatments and storage times, the ratio of photoactive to protective pigment is statistically comparable to the control, suggesting that the overall status of the photosystem is not affected, in line with the results of photosynthetic performance reported in Section 3.3.</p><p>However, it is important to emphasize that the analyses conducted in this study to assess the photosynthetic apparatus efficiency were performed during the exponential phase of culture growth following thawing. This implies that the difference in chlorophyll production has a lasting impact on the preserved cells. Supporting data for the increase in the chlorophyll a content were presented by [<xref ref-type="bibr" rid="scirp.133463-ref25">25</xref>] , who reported an increase in the chlorophyll content after thawing during the growth of the cultures. In higher plants, chlorophyll b acts as an antenna pigment and plays a key role in protein stabilization of the antenna complex, regulating its degradation. In addition, chlorophyll b participates in the protection of grana stack membranes from high light intensities [<xref ref-type="bibr" rid="scirp.133463-ref43">43</xref>] .</p><p>Pioneering studies on Chlorella cells led to the hypothesis that energy requirements in the form of ATP are higher when chlorophyll b concentrations are low. More recently, Perrine et al. [<xref ref-type="bibr" rid="scirp.133463-ref44">44</xref>] reported that a partial reduction in chlorophyll b levels in the green alga Chlamydomonas reinhardtii resulted in a reduction in the size of the peripheral light-harvesting antennae, allowing increased photosynthetic efficiency at high light intensities. The observed decrease in chlorophyll b in S. bacillaris after recovery from 1 month of cryopreservation could be interpreted as an early signal of a change in the structure of the peripheral antenna protein complexes, whose impact on cell metabolism needs to be assessed.</p></sec></sec><sec id="s4"><title>4. Conclusion</title><p>Sticochoccus bacillaris has historically been preserved at ultra-low temperatures (−196˚C). However, there is currently no standardized cryopreservation procedure for cultures and poor evaluation related to preservation of the photosystem apparatus. The present study confirmed S. bacillaris as one of the best candidates for short-term preservation. Importantly, preserving it at −80˚C storage proves to be a viable strategy. The results obtained in this study are encouraging, particularly considering the overall kinetic recovery, proving that it is possible to avoid the use of cryoprotectants at −80˚C storage. It is worth noting that immediately after thawing using DMSO and glycerol as cryoprotective agents could make advantage to recovery. However, even if the chosen preservation strategies allowed the cultures to perform photosynthesis without significant damage after 24 hours of storage, the results suggest that the overall efficiency of the photosystem was not affected after 1 month of storage, although the ratio between chlorophyll a and chlorophyll b was clearly altered. Long-term studies will be conducted to assess whether the differences found could cause chronic damage to photosystem efficiency of S. bacillaris cultures.</p></sec><sec id="s5"><title>Acknowledgements</title><p>The authors thank the European Commission-Next Generation EU, Project “Strengthening the MIRRI Italian Research Infrastructure for Sustainable Bioscience and Bioeconomy”, code n. IR0000005 for the support.</p></sec><sec id="s6"><title>Conflicts of Interest</title><p>The authors declare no conflicts of interest regarding the publication of this paper.</p></sec><sec id="s7"><title>Cite this paper</title><p>Licata, M., Marra, L., Nappi, N., Aurino, E., Oliva, F., De Natale, A., Giovannelli, D. and Pollio, A. (2024) Post Cryopreservation Growth Kinetic and Photosynthetic Assessment of an Acid Tolerant Strain of Stichococcus bacillaris. 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