<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">OJAppS</journal-id><journal-title-group><journal-title>Open Journal of Applied Sciences</journal-title></journal-title-group><issn pub-type="epub">2165-3917</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ojapps.2023.133028</article-id><article-id pub-id-type="publisher-id">OJAppS-123763</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject><subject> Chemistry&amp;Materials Science</subject><subject> Computer Science&amp;Communications</subject><subject> Engineering</subject><subject> Physics&amp;Mathematics</subject></subj-group></article-categories><title-group><article-title>
 
 
  Water Stress Early Detection of Eggplant Plants by Hyperspectral Fluorescence Spectroscopy
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Amara</surname><given-names>Kamate</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Penetjiligué</surname><given-names>Adama Soro</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Emma</surname><given-names>Georgina Zoro-Diama</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Kedro</surname><given-names>Sidiki Diomande</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Adjo</surname><given-names>Viviane Adohi-Krou</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>Laboratoire des Sciences de la Matière, de l’Environnement et de l’Energie Solaire (LASMES), Université Félix Houphou&amp;amp;#235;t-Boigny, Abidjan, C&amp;amp;#244;te d’Ivoire</addr-line></aff><aff id="aff2"><addr-line>Centre National de Recherche Agronomique (CNRA), Adiopodoumé, C&amp;amp;#244;te d’Ivoire</addr-line></aff><pub-date pub-type="epub"><day>02</day><month>03</month><year>2023</year></pub-date><volume>13</volume><issue>03</issue><fpage>343</fpage><lpage>354</lpage><history><date date-type="received"><day>13,</day>	<month>February</month>	<year>2023</year></date><date date-type="rev-recd"><day>18,</day>	<month>March</month>	<year>2023</year>	</date><date date-type="accepted"><day>21,</day>	<month>March</month>	<year>2023</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Water stress early detection is essential for precision farming to improve crop productivity and product quality. The methods usually used are destructive, 
  long and expensive. In this work, we used hyperspectral chlorophyll
   fluorescence technology as a rapid, non-destructive approach to detect the water deficiency of eggplant plants using their spectral footprint. So, an experiment was made on 54 eggplant plants subjected to three water treatments: normal irrigation (T
  <sub>100</sub>
  ), intermediate irrigation (T
  <sub>50</sub>
  ) and no irrigation (T
  <sub>0</sub>
  ). The fluorescence spectra were acquired 
  in vivo
   and 
  in situ
   using a USB4000 spectrometer from Ocean optics. For the classification of the plants subjected to three water treatments, we used three pretreatments of the raw hyperspectral 
  data in order to suppress the non-informative variability present in these
   spec
  tra and to obtain robust models. These are the Savitzky-Golay smoothing (SG),
   the standard normal variable (SNV) and the first derivative of Savitzky-Golay 
  (SG-D1). The preprocessed data were then subjected to two partial least squares
   discriminant analyses (PLS-DA): Hard PLS-DA and Soft PLS-DA. These statistical approaches are suitable for large samples as it reduces the dimensionality of the data but improves the accuracy of the prediction. The SG-D1 combined with the Soft PLS-DA gave the best discrimination of plants with scores of sensitivity, specificity and total efficiency respectively of 97.33%, 94% and 95% for calibration, 6 days after hydric stress induction. For the plants used for the prediction, the scores are 86%, 91% and 90% respectively. This study shows that hyperspectral chlorophyll fluorescence spectroscopy is a fast and non-destructive technology allowing early detection of water stress in eggplant plants.
 
</p></abstract><kwd-group><kwd>Chlorophyll Fluorescence</kwd><kwd> Eggplant</kwd><kwd> Water Stress</kwd><kwd> Water Deficiency</kwd><kwd> PLS-DA</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Eggplant is the fruit of a dicotyledonous plant from the Solanaceae family. There are several edible species of cultivated eggplant around the world. The fruits and leaves of all these species are consumed. They have many nutritional qualities. Low in calories, they are rich in fiber, vitamins, antioxidants and minerals beneficial to human health [<xref ref-type="bibr" rid="scirp.123763-ref1">1</xref>] [<xref ref-type="bibr" rid="scirp.123763-ref2">2</xref>] [<xref ref-type="bibr" rid="scirp.123763-ref3">3</xref>] . In C&#244;te d’Ivoire, the cultivation of eggplant occupies an important place in the food crop sector [<xref ref-type="bibr" rid="scirp.123763-ref4">4</xref>] because this plant is consumed in all regions of the country.</p><p>This important crop is sensitive to water stress, bacterial, viral, fungal diseases, etc. Because of global climate change, water deficiency is the most damaging abiotic stressor [<xref ref-type="bibr" rid="scirp.123763-ref5">5</xref>] . In agronomy, the water state indicator of plants (implicitly the water stress level) is their water content. In plant physiology methodology, several approaches to determining this parameter are frequently used [<xref ref-type="bibr" rid="scirp.123763-ref6">6</xref>] [<xref ref-type="bibr" rid="scirp.123763-ref7">7</xref>] . However, these methods are destructive, laborious, and lengthy and use few samples [<xref ref-type="bibr" rid="scirp.123763-ref8">8</xref>] .</p><p>Over the past decade, the technique of hyperspectral chlorophyll fluorescence spectroscopy has evolved rapidly. It is now a new scientific tool for non-destructive assessment of plant stress. Fluorescence emission is directly related to the process of photosynthesis that reflects the physiological state of the plant [<xref ref-type="bibr" rid="scirp.123763-ref9">9</xref>] - [<xref ref-type="bibr" rid="scirp.123763-ref14">14</xref>] . Thus, studying the fluorescence spectrum makes it possible to detect any stress experienced by the plant at the leaf or canopy scale [<xref ref-type="bibr" rid="scirp.123763-ref15">15</xref>] - [<xref ref-type="bibr" rid="scirp.123763-ref21">21</xref>] . Most of these studies use fluorescence ratios at two different wavelengths while for our work, we use the whole spectrum.</p><p>The aim of this study is to evaluate the early, rapid and non-destructive detection of water stress in eggplant plants from hyperspectral chlorophyll fluorescence data and to design an appropriate methodology. To achieve this objective, the raw data underwent pretreatment combined with discriminating analysis of partial least squares.</p><p>The present work is structured as follows: first, we explain the hydric stress induction and present the experimental setup to acquire the fluorescence spectra. Then, raw data analysis and pretreatment methods in order to discriminate the water-stressed plants are presented. Finally, we compare the results to identify the best method to detect hydric deficiency in eggplant plants.</p></sec><sec id="s2"><title>2. Materials and Methods</title><sec id="s2_1"><title>2.1. Study Site and Plant Material</title><p>The experiment was carried out at Adiopodoum&#233; Km 17 in C&#244;te d’Ivoire at an altitude of 05˚19'27.9''N and a longitude of 04˚08'12.6''W. To effectively control environmental variables, such as temperature, humidity and light, the experiment took place in the greenhouse of the Central Laboratory of Biotechnology of the Centre National de Recherche Agronomique (CNRA). In this greenhouse, the mean temperature and humidity values were 30˚C and 78% respectively. The eggplant variety provided by the CNRA and used in this study is called MEL7TV1.</p></sec><sec id="s2_2"><title>2.2. Induction of Water Deficit and Experimental Design</title><p>The eggplant seeds were sown on a seeding tray. When the seedlings reached the 4 - 5 leaf stage, they were removed from the seeding tray and transplanted into plastic pots. These pots, which had a diameter of 20 cm, a height of 22 cm and a capacity of 5 L, contained a well homogenized soil rich in mineral elements necessary for the good growth of the plant. The bottom of these pots has been pierced to let the water drain after watering to avoid root asphyxiation. Thirty (30) days after planting, the pots were arranged in three random blocks. Each block consisted of 24 plants subjected to three water treatments: normal irrigation (T<sub>100</sub>), intermediate irrigation (T<sub>50</sub>) and no irrigation (T<sub>0</sub>) with eight (8) plants per treatment. <xref ref-type="fig" rid="fig1">Figure 1</xref> shows the arrangement of plants for each water treatment in the three blocks (B1, B2 and B3).</p></sec><sec id="s2_3"><title>2.3. Acquisition of Leaf Fluorescence Spectra</title><p>As soon as the water deficit was induced, the fluorescence spectra were acquired in vivo and in situ on 216 leaves, at a rate of 3 leaves per plant. The spectral response of the leaves per plant was obtained from the average of these three measurements. Data collection took place every two days between 07:00 and 11:00 until the first signs of water stress appeared on leaves, 12 days after stress induction (DAI). The data we used for the analysis are all those acquired from 1 DAI to 6 DAI.</p><p>The fluorescence spectra acquisition system consisted of a USB 4000 spectrometer, a blue LED excitation source (LS-450), a bifurcated optical fiber and a laptop. Using the blue LS-450 source and the bifurcated optical fiber, the leaf is excited. After excitation, it emits fluorescent light which is sent to the USB4000 spectrometer by the second route of the bifurcated fiber. The fluorescence spectral data stored in the laptop connected to the spectrometer are between 640 and 800 nm with a 0.22 nm sampling pitch. <xref ref-type="fig" rid="fig2">Figure 2</xref> shows the configuration of the hyperspectral fluorescence experimental device.</p></sec><sec id="s2_4"><title>2.4. Data Analysis</title><p>The MATLAB R2018b software was used to analyze hyperspectral fluorescence data. Principal Component Analysis (PCA), Hyperspectral Data Pretreatment Methods and Partial Least Square Discriminant Analysis (PLS-DA) models for water stress early detection in eggplant plants during the asymptomatic period were used.</p><sec id="s2_4_1"><title>2.4.1. Principal Component Analysis</title><p>Principal Component Analysis is an extremely powerful information synthesis tool when a large quantitative database is available for processing and interpretation. It makes it possible to transform the many highly correlated variables into a reduced number of new uncorrelated variables: these new synthetic variables are called main components [<xref ref-type="bibr" rid="scirp.123763-ref22">22</xref>] [<xref ref-type="bibr" rid="scirp.123763-ref23">23</xref>] .</p><p>In general, the first two main components contain more than 90% [<xref ref-type="bibr" rid="scirp.123763-ref22">22</xref>] [<xref ref-type="bibr" rid="scirp.123763-ref23">23</xref>] of information from the original variables. In addition, the information contained in each variable is not repeated.</p><p>In this study, the raw chlorophyll fluorescence spectra of the control plants (T<sub>100</sub>) and stressed plants (T<sub>50</sub>, T<sub>0</sub>) collected were subjected to main components analysis. Therefore, the first three components were selected based on the cumulative variance rate and used to explore the distinction of plants subject to the three (3) water treatments.</p></sec><sec id="s2_4_2"><title>2.4.2. Spectral Pretreatment</title><p>After exploration of the raw hyperspectral data, pretreatment was necessary to remove the non-informative variability present in the raw spectra to obtain robust and highly discriminating models. Three pretreatment methods were used to correct the spectral data. These are: Savitzky-Golay (SG) smoothing [<xref ref-type="bibr" rid="scirp.123763-ref24">24</xref>] , the standard normal variable (SNV) [<xref ref-type="bibr" rid="scirp.123763-ref25">25</xref>] and the first derivative of Savitzky-Golay (SG-D1) [<xref ref-type="bibr" rid="scirp.123763-ref24">24</xref>] .</p></sec><sec id="s2_4_3"><title>2.4.3. Partial Discrimination Analysis of Least Squares</title><p>Following pretreatment, two multi-class versions of the partial least squares discriminant analysis (Hard PLS-DA and Soft PLS-DA) were used to build models for detecting water stress in eggplant plants.</p><p>Partial least squares discriminant analysis is a statistical approach used for large samples as it reduces the dimensionality of the data and maximizes the accuracy of the prediction. This is an appropriate method for highly correlated data. The PLS-DA model was developed using the PLS2 regression constructed between the X and Y matrices where the X matrix is used as a predictor, and the Y matrix with dummy variables represents the response. The regression model is used to compute the predicted responses Y ^ , which are then used for discrimination. In the traditional implementation of PLS-DA, the discrimination rule is based on the comparison of predicted response values of Y ^ with a fixed threshold (e.g. 0.5). In the hard and soft models of PLS-DA, the rule is based on the comparison of a distance between the thousandth line of the Y ^ matrix with the corresponding thousandth line of the Y matrix (vector of the pattern response for class k). To assess this distance, it was proposed [<xref ref-type="bibr" rid="scirp.123763-ref26">26</xref>] to use the main component analysis of the Y ^ matrix, which gives a “super-score” T matrix.</p><p>X , Y → P L S 2 Y ^ → P C A T</p><p>The “super-score” T matrix represents a new data set to which a classification method can be applied. We consider two methods: the linear discriminant analysis which provides a hard version of PLS-D and the quadratic discriminant analysis which results in a soft PLS-DA [<xref ref-type="bibr" rid="scirp.123763-ref26">26</xref>] .</p></sec></sec><sec id="s2_5"><title>2.5. Model Evaluation</title><p>Our database of 432 spectra was subdivided into 288 spectra for calibration and 144 spectra for prediction. Leave-One-Out cross-validation (LOOCV) was used to determine the main factors of the different models on calibration spectra only. Pomerantsev and Rodionova (2018) [<xref ref-type="bibr" rid="scirp.123763-ref26">26</xref>] proposed three parameters to characterize the overall quality of classification in relation to class k of multi-class models of partial least squares discriminant analysis: total sensitivity (TSE), total specificity (TSP) and total Efficiency (TEF). These are defined by the following equations:</p><p>T S E = 1 I ∑ k = 1 K n k k (1)</p><p>T S P = 1 − 1 I ∑ k ≠ 1 K n k l (2)</p><p>T E F = ( T S E ) &#215; ( T S P ) (3)</p><p>where n k k represents the number of samples of class k predicted as a member of class k; n k l represents the number of samples of class k predicted as a member of class l and I is the total sample size.</p><p>Sensitivity is the ability of the model to correctly identify the class of samples, while specificity is the ability of the model not to be mistaken in the classification. Efficiency represents the correct predictive accuracy of the model.</p></sec></sec><sec id="s3"><title>3. Results and Discussion</title><sec id="s3_1"><title>3.1. Fluorescence Spectral Signature Analysis</title><p>The raw chlorophyll fluorescence spectra of the leaves of all eggplant plants are presented in <xref ref-type="fig" rid="fig3">Figure 3</xref>(a). In <xref ref-type="fig" rid="fig3">Figure 3</xref>(b), the average spectral profile of the leaves of normal (T<sub>100</sub>), intermediate (T<sub>50</sub>) and no irrigation (T<sub>0</sub>) plants are plotted in green, blue and red respectively.</p><p>The spectral signatures of our samples are similar, regardless of the water state of the plants (<xref ref-type="fig" rid="fig3">Figure 3</xref>(a)). However, the chlorophyll fluorescence intensities of water deficient plants are lower than those of normal irrigation plants (<xref ref-type="fig" rid="fig3">Figure 3</xref>(b)). This shows that water stress influences the spectral characteristics of eggplant plants. High chlorophyll fluorescence intensity indicates reduced photosynthetic activity in leaves under water stress due to their low water and chlorophyll contents [<xref ref-type="bibr" rid="scirp.123763-ref10">10</xref>] . The spectral fluorescence responses of eggplant plants obtained are similar to those from other water stress studies conducted on other plants. Our results also show that the fluorescence spectra of eggplant leaves have a chlorophyll a fluorescence emission peak in the red at 685 nm and another peak in the near infrared at 735 nm. Various studies on other plant species have shown that these two peaks are between 680 nm and 740 nm regardless of the stress to which they have been subjected [<xref ref-type="bibr" rid="scirp.123763-ref17">17</xref>] [<xref ref-type="bibr" rid="scirp.123763-ref18">18</xref>] [<xref ref-type="bibr" rid="scirp.123763-ref27">27</xref>] . As displayed in <xref ref-type="fig" rid="fig3">Figure 3</xref>(b), the spectra of plants with normal irrigation (T<sub>100</sub>) and those with a water deficiency (T<sub>0</sub> and T<sub>50</sub>) present large difference. These plants are therefore likely to be discriminated from each other.</p></sec><sec id="s3_2"><title>3.2. Principal Component Analysis</title><p><xref ref-type="fig" rid="fig4">Figure 4</xref> shows the PCA results obtained using raw spectral fluorescence data from eggplant plants subjected to the three water treatments.</p><p>The principal components analysis results show that the first three major components (PC1, PC2 and PC3) express up to 98.24% of the total variance. These principal components have respectively, a variance of 95.94%, 1.64%, and 0.66%. The scatter diagram of the scores (<xref ref-type="fig" rid="fig4">Figure 4</xref>) for the first three major components of the raw spectra presents good discrimination between T<sub>0</sub> and T<sub>100</sub>. On the other hand, there is an overlap between T<sub>50</sub> and the treatments T<sub>100</sub> and T<sub>0</sub>. Although the PCA has reduced the number of spectral data, it is still difficult to effectively distinguish the couples of treatments (T<sub>0</sub>, T<sub>50</sub>) and (T<sub>100</sub>, T<sub>50</sub>).</p><p>To improve this classification, spectral preprocessing methods will be applied to the raw spectra to establish efficient discrimination models.</p></sec><sec id="s3_3"><title>3.3. Discriminant Analysis Hard PLS-DA and Soft PLS-DA</title><p>The statistics of the water status classification models of eggplant plants, Hard PLS-DA and Soft PLS-DA of the raw and preprocessed spectra, are presented in <xref ref-type="table" rid="table1">Table 1</xref>.</p><p>The Hard PLS-DA model obtained a total recognition efficiency of calibration and loss sets greater than 74%. The best model is obtained from raw spectra with a total efficiency of 91% in calibration and 85% in prediction. Applying SG, SNV and SG-D1 preprocessing methods before applying the model does not improve the overall classification efficiency. The total efficiency of SG, SNV and SG-D1 is even lower than that from raw spectra. The results of the best Hard PLS-DA classification model are shown in <xref ref-type="fig" rid="fig5">Figure 5</xref>.</p><p>The Soft PLS-DA model obtained a total recognition efficiency of calibration and loss sets greater than 81%. The SG-D1 preprocessing yielded the best classification model with a total efficiency of 95% in calibration and 90% in prediction,</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Hard PLS-DA and Soft PLS-DA model results of raw spectra, pre-processed SG, SG-D1 and SNV spectra to identify water status of eggplant plants</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="2"  >Spectra</th><th align="center" valign="middle"  rowspan="2"  >Data set</th><th align="center" valign="middle"  colspan="3"  >Hard PLS-DA</th><th align="center" valign="middle"  colspan="3"  >Soft PLS-DA</th></tr></thead><tr><td align="center" valign="middle" >Total Sensitivity (%)</td><td align="center" valign="middle" >Total Specificity (%)</td><td align="center" valign="middle" >Total Efficiency (%)</td><td align="center" valign="middle" >Total Sensitivity (%)</td><td align="center" valign="middle" >Total Specificity (%)</td><td align="center" valign="middle" >Total Sensitivity (%)</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >RAW</td><td align="center" valign="middle" >Calibration</td><td align="center" valign="middle" >91</td><td align="center" valign="middle" >91</td><td align="center" valign="middle" >91</td><td align="center" valign="middle" >97</td><td align="center" valign="middle" >96</td><td align="center" valign="middle" >94</td></tr><tr><td align="center" valign="middle" >Prediction</td><td align="center" valign="middle" >85</td><td align="center" valign="middle" >85</td><td align="center" valign="middle" >85</td><td align="center" valign="middle" >81</td><td align="center" valign="middle" >95</td><td align="center" valign="middle" >87</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SG</td><td align="center" valign="middle" >Calibration</td><td align="center" valign="middle" >76</td><td align="center" valign="middle" >76</td><td align="center" valign="middle" >76</td><td align="center" valign="middle" >97</td><td align="center" valign="middle" >91</td><td align="center" valign="middle" >94</td></tr><tr><td align="center" valign="middle" >Prediction</td><td align="center" valign="middle" >74</td><td align="center" valign="middle" >74</td><td align="center" valign="middle" >74</td><td align="center" valign="middle" >88</td><td align="center" valign="middle" >89</td><td align="center" valign="middle" >88</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SG-D1</td><td align="center" valign="middle" >Calibration</td><td align="center" valign="middle" >76</td><td align="center" valign="middle" >76</td><td align="center" valign="middle" >76</td><td align="center" valign="middle" >97</td><td align="center" valign="middle" >94</td><td align="center" valign="middle" >95</td></tr><tr><td align="center" valign="middle" >Prediction</td><td align="center" valign="middle" >75</td><td align="center" valign="middle" >75</td><td align="center" valign="middle" >75</td><td align="center" valign="middle" >86</td><td align="center" valign="middle" >91</td><td align="center" valign="middle" >90</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SNV</td><td align="center" valign="middle" >Calibration</td><td align="center" valign="middle" >85</td><td align="center" valign="middle" >85</td><td align="center" valign="middle" >85</td><td align="center" valign="middle" >96</td><td align="center" valign="middle" >82</td><td align="center" valign="middle" >89</td></tr><tr><td align="center" valign="middle" >Prediction</td><td align="center" valign="middle" >75</td><td align="center" valign="middle" >75</td><td align="center" valign="middle" >75</td><td align="center" valign="middle" >82</td><td align="center" valign="middle" >80</td><td align="center" valign="middle" >81</td></tr></tbody></table></table-wrap><p>representing a significant improvement in raw data performance. Therefore, Soft PLS-DA model coupled with SG-D1 pretreatment method and raw data could be adopted as an optimal combination to identify water status of eggplant plants. <xref ref-type="fig" rid="fig6">Figure 6</xref> illustrates the results of the best Soft PLS-DA classification model.</p><p>Comparing the results of the two multiclass versions of the partial least squares discriminant analysis, the Soft PLS-DA model performed better than the Hard PLS-DA model. The total efficiency of the Soft PLS-DA classification models was found to be higher than that of the Hard PLS-DA classification models, which is consistent with the trends reported by Kunz et al. [<xref ref-type="bibr" rid="scirp.123763-ref28">28</xref>] when identifying wood species and by Nunes et al. [<xref ref-type="bibr" rid="scirp.123763-ref29">29</xref>] to detect fraud in bovine meat.</p></sec></sec><sec id="s4"><title>4. Conclusions</title><p>Preprocessing methods of hyperspectral chlorophyll fluorescence data from eggplant leaves combined with classification models were applied to build water stress detection models. These models made it possible to detect the water deficiency of eggplant plants six days after stress induction, so before signs of stress are visible on the leaves. The results showed that Savitzky-Golay first derivative combined with soft partial least squares discriminant analysis provided the best discriminant effect, with scores of total sensitivity, total specificity and total efficiency of 97.33%, 94% and 95% respectively for the calibration and 86%, 91% and 90% for the prediction. The control plants (T<sub>100</sub>) and those not irrigated (T<sub>0</sub>) are correctly discriminated. On the other hand, there is an overlap between the pairs of data (T<sub>0</sub>, T<sub>50</sub>) and (T<sub>50</sub>, T<sub>100</sub>). However, there is less overlap if the spectral data are subjected to preprocessing.</p><p>This study shows that hyperspectral chlorophyll fluorescence spectra can provide early detection of water deficiency in eggplant plants, if these data have undergone preprocessing. This rapid and non-destructive method represents a promising way to monitor the water status of crops during the asymptomatic period.</p></sec><sec id="s5"><title>Acknowledgements</title><p>We would like to thank the Programme d’Appui Strat&#233;gique &#224; la Recherche Scientifique (PASRES) for funding our study and the Centre National de Recherche Agronomique (CNRA) for its scientific collaboration.</p></sec><sec id="s6"><title>Conflicts of Interest</title><p>The authors declare no conflicts of interest regarding the publication of this paper.</p></sec><sec id="s7"><title>Cite this paper</title><p>Kamate, A., Soro, P.A., Zoro-Diama, E.G., Diomande, K.S. and Adohi-Krou, A.V. (2023) Water Stress Early Detection of Eggplant Plants by Hyperspectral Fluorescence Spectroscopy. Open Journal of Applied Sciences, 13, 343-354. https://doi.org/10.4236/ojapps.2023.133028</p></sec></body><back><ref-list><title>References</title><ref id="scirp.123763-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Chioti, V., Zeliou, K., Bakogianni, A., Papaioannou, C., Biskinis, A., Petropoulos, C., Lamari, F.N. and Papasotiropoulos, V. (2022) Nutritional Value of Eggplant Cultivars and Association with Sequence Variation in Genes Coding for Major Phenolics. Plants, 11, Article 2267. https://doi.org/10.3390/plants11172267</mixed-citation></ref><ref id="scirp.123763-ref2"><label>2</label><mixed-citation publication-type="other" xlink:type="simple">Stommel, J.R. and Whitaker, B.D. (2003) Phenolic Acid Content and Composition of Eggplant Fruit in a Germplasm Core Subset. Journal of the American Society for Horticultural Science, 128, 704-710. https://doi.org/10.21273/JASHS.128.5.0704</mixed-citation></ref><ref id="scirp.123763-ref3"><label>3</label><mixed-citation publication-type="other" xlink:type="simple">Ni&amp;#241;o-Medina, G., Muy-Rangel, D., Gardea-Béjar, A., González-Aguilar, G., Heredia, B., Báez-Sa&amp;#241;udo, M., Siller-Cepeda, J. and De La Rochal, R.V. (2014) Nutritional and Nutraceutical Components of Commercial Eggplant Types Grown in Sinaloa, Mexico. Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 42, 538-544. https://doi.org/10.15835/nbha4229573</mixed-citation></ref><ref id="scirp.123763-ref4"><label>4</label><mixed-citation publication-type="other" xlink:type="simple">Journal Officiel de la République de C&amp;#244;te d’Ivoire (2015) Loi no 2015-537 du 20 juillet 2015 d’orientation agricole: Politique d’orientation agricole en C&amp;#244;te d’Ivoire, 118-127.</mixed-citation></ref><ref id="scirp.123763-ref5"><label>5</label><mixed-citation publication-type="book" xlink:type="simple">Hsiao, T., Fereres, E., Acevedo, E. and Henderson, D. (1976) Water Stress and Dynamics of Growth and Yield of Crop Plants. In: Lange, O.L., Kappen, L. and Schulze, E.D., Eds., Water and Plant Life, Ecological Studies, Vol. 19, Springer-Verlag, Berlin, 281-305. https://doi.org/10.1007/978-3-642-66429-8_18</mixed-citation></ref><ref id="scirp.123763-ref6"><label>6</label><mixed-citation publication-type="other" xlink:type="simple">Jones, H.G. (1994) Irrigation Scheduling: Advances and Pitfalls of Plant-Based Methods. Journal of Experimental Botany, 55, 2427-2436. https://doi.org/10.1093/jxb/erh213</mixed-citation></ref><ref id="scirp.123763-ref7"><label>7</label><mixed-citation publication-type="other" xlink:type="simple">Kramer, P.J. and Boyer, J.S. (1995) Water Relations of Plants and Soils. Academic Press Inc., San Diego, CA, 495.</mixed-citation></ref><ref id="scirp.123763-ref8"><label>8</label><mixed-citation publication-type="other" xlink:type="simple">Rodríguez-Pérez, J.R., Ria&amp;#241;o, D., Carlisle, E., Ustin, S. and Smart, D.R. (2007) Evaluation of Hyperspectral Indexes to Detect Grapevine Water Status in Vineyards. American Journal of Enology and Viticulture, 58, 302-317. https://doi.org/10.5344/ajev.2007.58.3.302</mixed-citation></ref><ref id="scirp.123763-ref9"><label>9</label><mixed-citation publication-type="other" xlink:type="simple">Maxwell, K. and Johnson, G.N. (2000) Chlorophyll Fluorescence—A Practical Guide. Journal of Experimental Botany, 51, 659-668. https://doi.org/10.1093/jexbot/51.345.659</mixed-citation></ref><ref id="scirp.123763-ref10"><label>10</label><mixed-citation publication-type="book" xlink:type="simple">Govindjee (2004) Chlorophyll a Fluorescence: A Bit of Basics and History. In: Papageorgiou, G.C. and Govindjee, Eds., Chlorophyll a Fluorescence: A Signature of Photosynthesis, Advances in Photosynthesis and Respiration, Vol. 19, Springer, Dordrecht, 1-41. https://doi.org/10.1007/978-1-4020-3218-9_1</mixed-citation></ref><ref id="scirp.123763-ref11"><label>11</label><mixed-citation publication-type="other" xlink:type="simple">Baker, N.R. (2008) Chlorophyll Fluorescence: A Probe of Photosynthesis in Vivo. Annual Review of Plant Biology, 59, 89-113. https://doi.org/10.1146/annurev.arplant.59.032607.092759</mixed-citation></ref><ref id="scirp.123763-ref12"><label>12</label><mixed-citation publication-type="other" xlink:type="simple">Stefanov, M.A., Rashkov, G.D. and Apostolova, E.L. (2022) Assessment of the Photosynthetic Apparatus Functions by Chlorophyll Fluorescence and P700 Absorbance in C3 and C4 Plants under Physiological Conditions and under Salt Stress. International Journal of Molecular Sciences, 23, Article 3768. https://doi.org/10.3390/ijms23073768</mixed-citation></ref><ref id="scirp.123763-ref13"><label>13</label><mixed-citation publication-type="other" xlink:type="simple">Murchie, E.H. and Lawson, T. (2013) Chlorophyll Fluorescence Analysis: A Guide to Good Practice and Understanding Some New Applications. Journal of Experimental Botany, 64, 3983-3998. https://doi.org/10.1093/jxb/ert208</mixed-citation></ref><ref id="scirp.123763-ref14"><label>14</label><mixed-citation publication-type="other" xlink:type="simple">Vredenberg, W. and Pavlovi&amp;#269;, A. (2013) Chlorophyll a Fluorescence Induction (Kautsky Curve) in a Venus Flytrap (Dionaea muscipula) Leaf after Mechanical Trigger Hair Irritation. Journal of Plant Physiology, 170, 242-250. https://doi.org/10.1016/j.jplph.2012.09.009</mixed-citation></ref><ref id="scirp.123763-ref15"><label>15</label><mixed-citation publication-type="other" xlink:type="simple">Méthy, M., Olioso, A. and Trabaud, L. (1994) Chlorophyll Fluorescence as a Tool for Management of Plant Resources. Remote Sensing of Environment, 47, 2-9. https://doi.org/10.1016/0034-4257(94)90121-X</mixed-citation></ref><ref id="scirp.123763-ref16"><label>16</label><mixed-citation publication-type="other" xlink:type="simple">Poobalasubramanian, M., Park, E.-S., Faqeerzada, M.A., Kim, T., Kim, M.S., Baek, I. and Cho, B.-K. (2022) Identification of Early Heat and Water Stress in Strawberry Plants Using Chlorophyll-Fluorescence Indices Extracted via Hyperspectral Images. Sensors, 22, Article 8706. https://doi.org/10.3390/s22228706</mixed-citation></ref><ref id="scirp.123763-ref17"><label>17</label><mixed-citation publication-type="other" xlink:type="simple">Soro, A.P., Zoro-Diama, E.G., Diomandé, K.S., Bany, G.E., Bibila, M.B.Y. and Adohi-Krou, A.V. (2016) Characterization of Water and Nitrogen Stress of Maize by Laser Induced Fluorescence. Applied Physics Research, 8, 64-72. https://doi.org/10.5539/apr.v8n4p64</mixed-citation></ref><ref id="scirp.123763-ref18"><label>18</label><mixed-citation publication-type="other" xlink:type="simple">Zoro-Diama, E.G., Soro, A.P., Diomandé, K.S., Dian, K., Kamate, A. and Adohi-Krou, A.V. (2017) Water Deficiency Detection of Hevea brasiliensis Clones by Laser Induced Fluorescence. Applied Physics Research, 9, 36-41. https://doi.org/10.5539/apr.v9n5p36</mixed-citation></ref><ref id="scirp.123763-ref19"><label>19</label><mixed-citation publication-type="other" xlink:type="simple">Xu, Q., Xiaopeng, M., Tingbo, L., Meng, B., Zelin, W. and Jingran, N. (2020) Effects of Water Stress on Fluorescence Parameters and Photosynthetic Characteristics of Drip Irrigation in Rice. Water, 12, Article 289. https://doi.org/10.3390/w12010289</mixed-citation></ref><ref id="scirp.123763-ref20"><label>20</label><mixed-citation publication-type="other" xlink:type="simple">Badr, A. and Brüggemann, W. (2020) Comparative Analysis of Drought Stress Response of Maize Genotypes Using Chlorophyll Fluorescence Measurements and Leaf Relative Water Content. Photosynthetica, 58, 638-645. https://doi.org/10.32615/ps.2020.014</mixed-citation></ref><ref id="scirp.123763-ref21"><label>21</label><mixed-citation publication-type="other" xlink:type="simple">Wang, N., Clevers, J.G.P.W., Wieneke, S., Bartholomeus, H. and Kooistra, L. (2022) Potential of UAV-Based Sun-Induced Chlorophyll Fluorescence to Detect Water Stress in Sugar Beet. Agricultural and Forest Meteorology, 323, Article ID: 109033. https://doi.org/10.1016/j.agrformet.2022.109033</mixed-citation></ref><ref id="scirp.123763-ref22"><label>22</label><mixed-citation publication-type="other" xlink:type="simple">Manly, B.F. and Alberto, J.A.N. (2016) Multivariate Statistical Methods: A Primer. 4th Edition, Chapman and Hall/CRC, New York. https://doi.org/10.1201/9781315382135</mixed-citation></ref><ref id="scirp.123763-ref23"><label>23</label><mixed-citation publication-type="other" xlink:type="simple">Abdi, H. and Williams, L.J. (2010) Principal Component Analysis. WIREs Computational Statistics, 2, 433-459. https://doi.org/10.1002/wics.101</mixed-citation></ref><ref id="scirp.123763-ref24"><label>24</label><mixed-citation publication-type="other" xlink:type="simple">Savitsky, A. and Golay, M.J.E. (1964) Smoothing and Differentiation of Data by Simplified Least Squares Procedures. Analytical Chemistry, 36, 1627-1639. https://doi.org/10.1021/ac60214a047</mixed-citation></ref><ref id="scirp.123763-ref25"><label>25</label><mixed-citation publication-type="other" xlink:type="simple">Barnes, R.J., Dhanoa, M.S. and Lister, S.J. (1989) Standard Normal Variate Transformation and De-Trending of Near-Infrared Diffuse Reflectance Spectra. Applied Spectroscopy, 43, 772-777. https://doi.org/10.1366/0003702894202201</mixed-citation></ref><ref id="scirp.123763-ref26"><label>26</label><mixed-citation publication-type="other" xlink:type="simple">Pomerantsev, A. and Rodionova, O.Y. (2018) Multiclass Partial Least Squares Discriminant Analysis: Taking the Right Way—A Critical Tutorial. Journal of Chemometrics, 32, e3030. https://doi.org/10.1002/cem.3030</mixed-citation></ref><ref id="scirp.123763-ref27"><label>27</label><mixed-citation publication-type="other" xlink:type="simple">Buschmann, C. (2007) Variability and Application of the Chlorophyll Fluorescence emission Ratio Red/Far-Red of Leaves. Photosynthesis Research, 92, 261-271. https://doi.org/10.1007/s11120-007-9187-8</mixed-citation></ref><ref id="scirp.123763-ref28"><label>28</label><mixed-citation publication-type="other" xlink:type="simple">Kunze, D.C.G.C., Pastore, T.C.M., Rocha, H.S., Lopes, P.V.A., Vieira, R.D., Coradin, V.T.R. and Braga, J.W.B. (2021) Correction of the Moisture Variation in Wood NIR Spectra for Species Identification Using EPO and Soft PLS2-DA. Microchemical Journal, 171, Article ID: 106839. https://doi.org/10.1016/j.microc.2021.106839</mixed-citation></ref><ref id="scirp.123763-ref29"><label>29</label><mixed-citation publication-type="other" xlink:type="simple">Nunes, K.M., Andrade, M.V.O., Almeida, M.R. and Sena, M.M. (2020) A Soft Discriminant Model Based on Mid-Infrared Spectra of Bovine Meat Purges to Detect Economic Motivated Adulteration by the Addition of Non-Meat Ingredients. Food and Analytical Methods, 13, 1699-1709. https://doi.org/10.1007/s12161-020-01795-3</mixed-citation></ref></ref-list></back></article>