<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">OJSS</journal-id><journal-title-group><journal-title>Open Journal of Soil Science</journal-title></journal-title-group><issn pub-type="epub">2162-5360</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ojss.2023.132005</article-id><article-id pub-id-type="publisher-id">OJSS-123314</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Earth&amp;Environmental Sciences</subject></subj-group></article-categories><title-group><article-title>
 
 
  How Does Heat-Stress Intensity Affect the Stability of Microbial Activity and Diversity of Soil Microbial Communities in Outfields and Homefields’ Cultivation Practices in the Senegalese Groundnut Basin?
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Paul</surname><given-names>Ndiaga Ciss</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Laure</surname><given-names>Tall</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Saidou</surname><given-names>Nourou Sall</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mariama</surname><given-names>Dalanda Diallo</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Paula</surname><given-names>Fernandes</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Tidiane</surname><given-names>Dieye</given-names></name><xref ref-type="aff" rid="aff4"><sup>4</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Medoune</surname><given-names>Mbengue</given-names></name><xref ref-type="aff" rid="aff4"><sup>4</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Espoir</surname><given-names>Gaglo</given-names></name><xref ref-type="aff" rid="aff5"><sup>5</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Komi</surname><given-names>Assigbetse</given-names></name><xref ref-type="aff" rid="aff6"><sup>6</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib></contrib-group><aff id="aff5"><addr-line>ISRA (Institut Sénégalais de Recherche Agricole), LNRPV, Dakar, Sénégal</addr-line></aff><aff id="aff1"><addr-line>LABAAM, UFR S2ATA, Université Gaston Berger, Saint Louis, Sénégal</addr-line></aff><aff id="aff2"><addr-line>IPAR (Initiative Prospective Agricole et Rurale), Dakar, Sénégal</addr-line></aff><aff id="aff6"><addr-line>Eco &amp;amp; Sols, Université de Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, France</addr-line></aff><aff id="aff4"><addr-line>LMI IESOL, Centre ISRA-IRD-UCAD, Dakar, Sénégal</addr-line></aff><aff id="aff3"><addr-line>CIRAD, UPR Hortsys, Centre ISRA-IRD-UCAD, Dakar, Sénégal</addr-line></aff><pub-date pub-type="epub"><day>22</day><month>02</month><year>2023</year></pub-date><volume>13</volume><issue>02</issue><fpage>97</fpage><lpage>123</lpage><history><date date-type="received"><day>20,</day>	<month>December</month>	<year>2022</year></date><date date-type="rev-recd"><day>23,</day>	<month>January</month>	<year>2023</year>	</date><date date-type="accepted"><day>27,</day>	<month>February</month>	<year>2023</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  Agroecosystems in the Senegalese groundnut basin experience long periods of high temperatures and drought, which disrupt the stability of soil microbial communities. This study evaluated how that stability is affected by homefields and outfields’ agricultural practices and the duration of heat stress. Specifically, we collected soils from organically farmed fields that receive continual high inputs of manure (homefields), and from fields that are rarely manured (outfields). Soil samples were submitted to artificial heat stress at 60
  &#176;C for 3, 14, and 28 days, followed by 28 days of recovery at 28
  &#176;C. We examined the functional stability of microbial communities by quantifying C mineralization, and characterized the stability of the communities’ taxonomic compositions via high-throughput DNA sequencing. We found that the microbial communities have a low resistance to heat stress in soils from both types of fields. However, the manuring practice does affect how the functional stability of microbial communities responds to different durations of heat stress. Although functional stability was not recovered fully in either soil, microbial community resilience seemed to be greater in homefield soils. Differences in manuring practices also affected the structural taxonomic stability of microbial communities: relative abundances of 
  <em>Bacilli</em>, 
  <em>Chloroflexia</em>, 
  <em>Actinobacteria</em> and 
  <em>Sordariomycetes</em> increased in the homefield stressed-soils, but decreased significantly in outfield soils. In contrast, relative abundances of 
  <em>α-Proteobacteria</em>, 
  <em>γ-Proteobacteria</em> and 
  <em>Eurotiomycetes</em> increased significantly in outfield stressed-soils, while decreasing significantly in the homefield soils. Relative abundances of 
  <em>Bacilli</em> changed little in outfield soils, indicating that this taxon is resistant to heat stress. In summary, the microbial communities’ capacities to resist heat stress and recover from it depend upon the organic richness of the soil (
  <em>i.e.</em>, manuring practice) and the adaptation of soil microbes to environmental conditions.
 
</p></abstract><kwd-group><kwd>Groundnut Basin Senegal</kwd><kwd> Agricultural Practice</kwd><kwd> Heat Stress</kwd><kwd> Microbial Stability</kwd><kwd> Microbial Diversity</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Many ecosystem services such as nutrient cycling, primary production and carbon sequestration are essential soils’ functions [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] . The need to study how soil microbial communities respond to climate-related disturbances (i.e., heat stress and drought) is urgent because soil microorganisms are involved in many biogeochemical cycling processes that are influenced by the main environmental factors, such as temperature and moisture [<xref ref-type="bibr" rid="scirp.123314-ref2">2</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref3">3</xref>] . The taxonomic stability of soil microbial communities, specifically, is important for maintaining soil functions [<xref ref-type="bibr" rid="scirp.123314-ref4">4</xref>] . Thus, the combination of resistance (RS) and resilience (RL) determines the ability of a community to continue to function under changing conditions [<xref ref-type="bibr" rid="scirp.123314-ref5">5</xref>] . RS and RL of soil microbial communities are two main components of ecological stability that are used to evaluate the communities’ responses to disturbances [<xref ref-type="bibr" rid="scirp.123314-ref6">6</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref7">7</xref>] . Ng et al. [<xref ref-type="bibr" rid="scirp.123314-ref8">8</xref>] , define RS as the microorganisms’ ability to maintain activity, and RL as their ability to recover. To assess the resistance and the resilience of soil functions, several indices have been developed [<xref ref-type="bibr" rid="scirp.123314-ref5">5</xref>] .</p><p>In Senegal’s Groundnut Basin region, the combination of climate change and anthropogenic pressure has already accelerated ecosystem degradation and induced profound changes in the cultivation system [<xref ref-type="bibr" rid="scirp.123314-ref9">9</xref>] . The climatic changes themselves have disrupted the functioning of agroecosystems [<xref ref-type="bibr" rid="scirp.123314-ref10">10</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref11">11</xref>] , including the biological functioning of soils [<xref ref-type="bibr" rid="scirp.123314-ref11">11</xref>] .</p><p>Previous studies reported that heat stress reduces the resistance of microbial biomass [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] . In addition, metabolic rates of soil microorganisms reportedly decrease above 40˚C [<xref ref-type="bibr" rid="scirp.123314-ref12">12</xref>] . Recent studies emphasize that the response of microorganisms to heat stress depends not only upon the duration of the stress [<xref ref-type="bibr" rid="scirp.123314-ref13">13</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref14">14</xref>] , but also upon microbial diversity [<xref ref-type="bibr" rid="scirp.123314-ref4">4</xref>] and the soils’ physico-chemical properties [<xref ref-type="bibr" rid="scirp.123314-ref15">15</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref16">16</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref17">17</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref18">18</xref>] . Moreover, Kaisermann et al. [<xref ref-type="bibr" rid="scirp.123314-ref19">19</xref>] , indicate that the RS and RL of soil microbial communities can be affected by soils’ nutrient availability and content of soil organic matter (SOM). Both of these characteristics are known to vary with agricultural practices. Kuan et al. [<xref ref-type="bibr" rid="scirp.123314-ref20">20</xref>] have argued that soils with the highest organic carbon contents may be more resistant to stress. Specifically, SOM inputs can increase soil basal respiration [<xref ref-type="bibr" rid="scirp.123314-ref17">17</xref>] and microbial diversity [<xref ref-type="bibr" rid="scirp.123314-ref16">16</xref>] . SOM inputs can also increase the stability of soil microbial communities during disturbances [<xref ref-type="bibr" rid="scirp.123314-ref21">21</xref>] , even though the inputs may not increase the soil’s microbial biomass [<xref ref-type="bibr" rid="scirp.123314-ref22">22</xref>] . It is through such mechanisms that land use can have legacy effects on the stability of microbial biomass.</p><p>Land use in Senegal’s groundnut basin is characterized by two main practices regarding SOM management. Homefields near the homestead received a continuous application of the household’s organic waste and receive substantial amounts (ranging from 4 to 20 t&#183;ha<sup>−1</sup> of dry matter) of cattle and small ruminant manures every year or two [<xref ref-type="bibr" rid="scirp.123314-ref23">23</xref>] . Therefore, homefields are more fertile than the outfields, which receive organic fertilization ≤ 1 Mg ha<sup>−1</sup>&#183;yr<sup>−1</sup>, and thus remain poor in organic matter and nutrients [<xref ref-type="bibr" rid="scirp.123314-ref23">23</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref24">24</xref>] . The climate-related responses of soil microbial communities in the two types of fields are important to understand because of the prolonged drought that the groundnut basin has suffered during the last two decades. Rainfall has decreased [<xref ref-type="bibr" rid="scirp.123314-ref25">25</xref>] , with rainy breaks that frequently exceed 15 days [<xref ref-type="bibr" rid="scirp.123314-ref26">26</xref>] , the air temperatures sometimes reach 43˚C [<xref ref-type="bibr" rid="scirp.123314-ref27">27</xref>] , and between 50˚C and 60˚C at the surface of the soil in case of extreme heat (Supplementary material 1). It is known that extreme episodes of precipitation and temperature affect microorganisms in ways that progressively decelerate the decomposition of organic matter [<xref ref-type="bibr" rid="scirp.123314-ref28">28</xref>] . However, agriculture can adapt to climate change by adopting farm management practices that minimize the adverse effects of extreme weather conditions [<xref ref-type="bibr" rid="scirp.123314-ref29">29</xref>] , or that enhance soil functional stability [<xref ref-type="bibr" rid="scirp.123314-ref29">29</xref>] and increase sequestration of soil organic carbon (SOC) [<xref ref-type="bibr" rid="scirp.123314-ref24">24</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref30">30</xref>] . Thus, understanding the effects of heat disturbances upon the stability of soil microorganisms is important for deciphering the impact of agricultural practices that farmers in the groundnut basin adopt in face of climate change. This study should allow us to quantify the resistance and resilience of soil microbial heterotrophic respiration to artificial disturbance by extreme heat [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] . Several studies used long-term experiments, exposing the soils, in laboratory or the field conditions, to increased temperatures ranging from a few degrees (25˚C) [<xref ref-type="bibr" rid="scirp.123314-ref17">17</xref>] to several tens of degrees (50˚ to 500˚C) [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref31">31</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref32">32</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref33">33</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref34">34</xref>] .</p><p>The aim of this study was to determine 1) how the duration of heat stress affects the stability of soil microbial community activity and diversity, and 2) how this response can be influenced by organic amendments. We hypothesized that 1) the effect of heat stress on the stability of microorganisms depends upon the duration of the disturbance; 2) microbial communities in fields that receive organic amendments regularly (i.e. homefields) are more resilient to heat stress than communities in outfields, which are amended less frequently; and 3) heat stress reduces the taxonomic diversity of soil microbial communities.</p></sec><sec id="s2"><title>2. Materials and Methods</title><sec id="s2_1"><title>2.1. Sampling Site</title><p>Soils samples were collected from homefields and outfields in the village of Diohine, which is located in the Senegalese Groundnut Basin at 14˚29'51&quot;N, 16˚30'36&quot;W [<xref ref-type="bibr" rid="scirp.123314-ref23">23</xref>] . The local soil is classified as Arenosol [<xref ref-type="bibr" rid="scirp.123314-ref35">35</xref>] , with mostly low clay contents (&lt;5%; mainly kaolinite) [<xref ref-type="bibr" rid="scirp.123314-ref24">24</xref>] . The climate is Sudano-Sahelian, characterized by a long dry season (October to June) and three months of rainy season from July to September. Annual rainfall is 530 mm, and the average annual temperature is 30˚C. Woody vegetation is dominated by Faidherbia albida distributed in parkland; the geological substratum consists of tertiary sandstones [<xref ref-type="bibr" rid="scirp.123314-ref24">24</xref>] . The homefields and outfields whose soils we sampled produced millet (Pennisetum typhoides): the area’s main crop, which in some cases is rotated with maize, cowpea, and groundnut.</p></sec><sec id="s2_2"><title>2.2. Soils</title><p>Two types of plots were used (homefields and outfields) that were representative of the two cultural practices in groundnut basin. Homefields received substantial amounts of cattle and small ruminant manures every year or two ranging 4 to 20 t&#183;ha<sup>−1</sup> of dry matter while outfields received organic fertilization ≤ 1 Mg ha<sup>−1</sup>&#183;yr<sup>−1</sup> [<xref ref-type="bibr" rid="scirp.123314-ref23">23</xref>] .</p><p>The soil samples were collected during the dry season at depth of 0 - 10 cm in six plots of homefields and six plots of outfields (Supplementary material 2). As shown in Supplementary material 3, the homefields soils contain 0.9% clay, 2.2% silt, 96.9% sand, 0.45% SOM, 0.26% total C, 1.88 meq/100g CEC, 0.02% total N, and 4.84 ppm assimilable P. Their C/N ratio is 10.9 and the pH 6.72. The outfields soils contain 1.3% clay, 1% silt, 97.7% sand, 0.22% SOM, 0.13% total C, 1.30 meq/100g CEC, 0.01% total N, and 3.75 ppm assimilable P, with a C/N ratio of 12.9 and pH 5.86. Soils’ physico-chemical characteristics were performed at ISRA, CNRA laboratory of Bambey, Senegal (https://www.isra.sn). For the characterization of SOM and C the modified Walkley and Black [<xref ref-type="bibr" rid="scirp.123314-ref36">36</xref>] , method was used. The modified Olsen method was used for assimilable P, and Kjeldahl method for total N. The Robinson’s pipette method with USDA classification was used for soil texture, the ammonium acetate for CEC, and a laboratory pH-meter with electrode and extractor for the pH.</p><p>After the physico-chemical analysis, the six replicates of each practice were, pooled, sieved to &lt;2 mm and stored at room temperature pending processing. The sample for each site consisted of six pooled subsamples.</p></sec><sec id="s2_3"><title>2.3. Stress Strategy and Soil Incubation</title><p>The experiment was carried out under glasshouse controlled conditions. In the region of interest in Senegal CP4-Africa simulations (AMMA-CATCH, 2018) (Supplementary material 1), showed that temperature can exceed 50˚C at surface of the soil. Therefore, we chose 60˚C as the extreme heat-stress temperature so that we could determine which of the microbial communities is most resistant to extreme thermal stress. Further support for choosing 60˚C is found in Riah-Anglet et al. [<xref ref-type="bibr" rid="scirp.123314-ref37">37</xref>] , who report not only that microbial communities’ activities are affected similarly by heat stress at 50˚C and 60˚C, but that 60˚C represents an extreme thermal stress [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref37">37</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref38">38</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref39">39</xref>] .</p><p>The heat-stress experiments and subsequent analyses were done on aliquots of six homefields and six outfields soils. The aliquots for a given pooled soil sample (i.e., six pooled subsamples of homefields soil or outfields soil) were prepared as follows. First, we determined the pooled sample’s residual water content and water-holding capacity (WHC), after which we added demineralized water to raise the sample’s water content to 80% of WHC. The aliquots’ samples were then pre-incubated at 28˚C for seven days to stabilize their microbial activity, per the recommendations of Wada and Toyota [<xref ref-type="bibr" rid="scirp.123314-ref21">21</xref>] .</p><p>After pre-incubation, the microcosms were made of 330 ml glass bottles filled with 30 g of equivalent dry aliquot soils at 80% WHC [<xref ref-type="bibr" rid="scirp.123314-ref6">6</xref>] . Each bottle was then sealed with a waterproof rubber plug. Heat stress in sealed bottles does not resemble actual heat stress in the field, but several studies have used this method to elucidate the different responses of the microbial community to disturbance and thus give trends of potential change in the real environment [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref6">6</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref40">40</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref41">41</xref>] . We simulated extreme heat stress under controlled conditions and applied two distinct treatments: control (without stress) and heat stress. As a control sample (i.e., not heat-stressed), and following the protocols of Wada and Toyota [<xref ref-type="bibr" rid="scirp.123314-ref21">21</xref>] , one of the bottles was then held at 28˚C while the others were held for (variously) 3, 14, or 28 days at 60˚C to simulate heat stress [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref37">37</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref38">38</xref>] . The three durations are denoted as SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub>, respectively. We ran three replications of each duration for each pooled soil sample. After each heat-stress sample had completed its time at 60˚C, it was given a 28-day recovery incubation at 28˚C [<xref ref-type="bibr" rid="scirp.123314-ref42">42</xref>] .</p><p>Each bottle was weighed every 3 days, from the beginning of the heat stress until the end of the post-stress recovery incubation. Demineralized water was added as needed to maintain the soil moisture content between 70% and 80% of WHC. At the end of incubation, we took triplicate soil samples from each bottle for molecular analyses, then stored the 3 samples at -80˚C until DNA extraction.</p></sec><sec id="s2_4"><title>2.4. Microbial CO<sub>2</sub> Respiration</title><p>To quantify the metabolic activities of soil microorganisms after the heat stress [<xref ref-type="bibr" rid="scirp.123314-ref43">43</xref>] , we measured basal respiration (i.e., the CO<sub>2</sub> emitted by soil samples) [<xref ref-type="bibr" rid="scirp.123314-ref14">14</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref17">17</xref>] of the same aliquots of soil (i.e., those that were sealed in 330-ml bottles) that are described in Section 2.2. CO<sub>2</sub> levels in the bottles were measured using gas phase micro-chromatography (μ-CPG Agilent 490, 1109602). Air was renewed frequently via an air pump to avoid accumulation. The total amounts of CO<sub>2</sub> emitted (&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil) were calculated after the 28-day recovery incubation for each of the 3 stress durations (SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub>). For each of those durations, C mineralization rates (&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil&#183;day<sup>−1</sup>) of a given soil sample were measured during the 28-day recovery incubation. The rate was also calculated immediately after heat stress.</p></sec><sec id="s2_5"><title>2.5. Resistance (RS) and Resilience (RL) Indices</title><p>We calculated Orwin and Wardle’s RS and RL indices, which are generic ones that may be used for any sort of disturbance [<xref ref-type="bibr" rid="scirp.123314-ref5">5</xref>] to estimate the microbial communities’ resistance and resilience under heat stress.</p><p>The RS index for a given soil aliquot and heat-stress duration was calculated from C mineralization rates that were measured immediately after heat stress. That is, at the end of SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub>:</p><p>RS ( t 0 ) = 1 − 2 | D 0 | / ( C 0 + | D 0 | ) (1)</p><p>where D<sub>0</sub> is the difference between P<sub>0</sub> (in our case, the C mineralization rates of the heat-stressed sample immediately after heat stress) and C<sub>0</sub> (the rate for the control samples; i.e., those which were maintained at 28˚C while the others were undergoing heat stress). Note t<sub>0</sub> is the moment at which the rates were measured at the end of heat stress.</p><p>The resilience index, RL, was calculated from C mineralization rates that were measured at time t<sub>x</sub>, the end of the 28-day recovery incubation that followed SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub>:</p><p>RL ( t x ) = 2 | D 0 | / ( | D 0 | + | D x | ) − 1 (2)</p><p>Here, D<sub>0</sub> is as above, and D<sub>x</sub> is the difference between the C mineralization rates of the control soil (C<sub>x</sub>) and the heat-stressed soil (P<sub>x</sub>) at the time point (t<sub>x</sub>) chosen to measure resilience. Note that the values of these two indices are bounded by −1 and +1 with a value of +1 showing that the disturbance had no effect (maximal resistance), and lower values showing stronger effects (i.e. less resistance). An index value of 0 indicates either a 100% reduction or increase in the value of the disturbed soil. Similarly, an RL of +1 indicates that P<sub>x</sub> = C<sub>x</sub> (complete recovery after the disturbance), and lower values indicate slower recovery. An index value of 0 indicates that the disturbed soil has either not recovered at all since the disturbance ended (i.e. D<sub>0</sub> = D<sub>x</sub>) [<xref ref-type="bibr" rid="scirp.123314-ref5">5</xref>] .</p></sec><sec id="s2_6"><title>2.6. DNA Extraction and Sequencing</title><p>After 28 days of recovery incubation, high-throughput sequencing was performed on SD<sub>28</sub> of homefield and SD<sub>14</sub> of outfield to find the microbial communities responsible of the partial resilience observed at the end of their 28-day recovery. For the homefield, three heat stress samples of SD<sub>28</sub> and control without incubation and three heat stress samples of SD<sub>14</sub> and control without incubation of outfield were used for DNA extraction.</p><p>Thus, total genomic DNA of each soil sample was extracted from 0.25 g of soil using the FastDNA<sup>TM</sup> SPIN kit for Soil (MP Biomedicals, CA, USA), with modification of the manufacturer’s instructions [<xref ref-type="bibr" rid="scirp.123314-ref44">44</xref>] .</p><p>The quality and concentration of the extracted DNA was verified after electrophoresis migration on 1.5% agarose gel. High-throughput sequencing was performed at ADNID (Montferrier, France; http://www.adnid.fr) with Illumina MiSeq system (Illumina) targeting 16S rRNA gene with the 515F/806R primers set and ITS gene with the ITS3F-ITS4R primers. The sequences were deionized, and operational taxonomic units (OTU) were defined by clustering at 3% divergence (97% similarity) followed by removal of singletons and chimeras. Final OTUs were taxonomically classified using BLASTn against a curated database derived from GreenGenes and SYLVA. We then produced the final OTUs tables containing the number of sequences per sample per OTU matching the designated taxonomic classification. The whole process was conducted at ADNID (Montferrier, France; http://www.adnid.fr)</p></sec><sec id="s2_7"><title>2.7. Statistical Analyses</title><p>The statistical analyses were performed with R software v. 3.1.3 (Peter Dalgaard, CET 2015). Normal distribution of residuals and homogeneity of variance were assessed by (respectively) the Shapiro and Bartlett tests. If these two conditions were met, one-way ANOVA was performed to analyze the effect of heat stress. A Tukey HSD test was used for pairwise multiple comparisons if heat-stressed samples and control samples differed significantly in their physico-chemical characteristics, C mineralization, or microbial-diversity indices. A Kruskal Wallis non-parametric test was performed whenever residuals were not normally distributed, or variances were inhomogeneous. Each sample’s α-diversity of bacterial and fungi communities was evaluated by calculating richness and the Shannon and Simpson indexes.</p></sec></sec><sec id="s3"><title>3. Results</title><p>For all statistical analyses, the level of significance is p &lt; 0.05.</p><sec id="s3_1"><title>3.1. Cumulative Respiration of C-CO<sub>2</sub></title><p>CO<sub>2</sub> accumulation (&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil) was calculated after 28 days of recovery incubation. For all 3 heat-stress durations, C mineralization in homefield samples was significantly higher than that of the controls (by 32.19% for SD<sub>3</sub>, 86.94% for SD<sub>14</sub>, and 94.12% for SD<sub>28</sub>) (<xref ref-type="table" rid="table1">Table 1</xref>). In the heat-stressed outfield samples, the C mineralization was again higher than in the controls (by 2.53% for SD<sub>3</sub>; 18.3% for SD<sub>14</sub>; and 8.96% for SD<sub>28</sub>), but only the SD<sub>14</sub> sample’s increase was significant. C mineralization in the control homefield samples is also 2.26 to 2.5 fold the C mineralization in the control outfield samples, comparable to organic C ratio between homefield and outfield (2.69).</p></sec><sec id="s3_2"><title>3.2. Organic Carbon (C) Mineralization</title><p>Heat-stressed homefield soils had high mineralization rates compared to control. The average rate for SD<sub>3</sub> was 8.83 &#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil&#183;day<sup>−1</sup>, versus 6.96 and 5.36</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1">Table 1</xref></label><caption><title> Cumulative basal respiration (&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil) at the end of the 28-day incubation period for SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub> samples of homefield and outfield soils</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="2"  >Incubation times</th><th align="center" valign="middle"  rowspan="2"  >Treatments</th><th align="center" valign="middle" >Homefield</th><th align="center" valign="middle" >Outfield</th></tr></thead><tr><td align="center" valign="middle"  colspan="2"  >Cumulative respiration (&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil)</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SD<sub>3</sub></td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >44.48 (&#177;1.54)<sup>a</sup></td><td align="center" valign="middle" >17.80 (&#177;1.17)<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >58.80 (&#177;0.93)<sup>b</sup></td><td align="center" valign="middle" >18.25 (&#177;0.15)<sup>a</sup></td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SD<sub>14</sub></td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >53.60 (&#177;1.91)<sup>a</sup></td><td align="center" valign="middle" >21.40 (&#177;1.49)<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >100.20 (&#177;5.88)<sup>b</sup></td><td align="center" valign="middle" >25.31 (&#177;1.63)<sup>b</sup></td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SD<sub>28</sub></td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >61.89 (&#177;2.43)<sup>a</sup></td><td align="center" valign="middle" >27.34 (&#177;4.73)<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >120.14 (&#177;2.98)<sup>b</sup></td><td align="center" valign="middle" >29.79 (&#177;6.85)<sup>a</sup></td></tr></tbody></table></table-wrap><p>Superscripts indicate significant differences between stress and control samples (p &lt; 0.05), n = 3.</p><p>for SD<sub>14</sub> and SD<sub>28</sub>, respectively. All 3 of these rates were significantly higher (p &lt; 0.05) than the low, stable rates of the corresponding control samples (2.22, 1.84, and 1.59 &#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil&#183;day<sup>−1</sup> respectively for SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub>) (<xref ref-type="table" rid="table2">Table 2</xref>). However, mineralization rates decreased towards the end of the heat stress and during the recovery incubation (Figures 1(a)-(c)). At the beginning of that recovery, the SD<sub>3</sub> samples showed a respiration pulse 115.4% higher (significant at p &lt; 0.05) than that of control samples (<xref ref-type="fig" rid="fig1">Figure 1</xref>(a)). In contrast, the SD<sub>14</sub> and SD<sub>28</sub> treatments showed no such difference in respiration flux between control and heat-stress samples (<xref ref-type="fig" rid="fig1">Figure 1</xref>(b), <xref ref-type="fig" rid="fig1">Figure 1</xref>(c)).</p><p>In the case of outfield soils, the average mineralization rates of heat-stress samples were again higher than the low, stable rates of the controls (1.44, 0.85, and 0.81 C-CO<sub>2</sub> g<sup>−1</sup> soil&#183;day<sup>−1</sup> for the heat-stressed SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub> samples, versus 1.22, 0.94 and 0.84 &#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil&#183;day<sup>−1</sup> for the respective control samples). However, none of the differences are significant (<xref ref-type="table" rid="table2">Table 2</xref>). C mineralization rates decreased towards the end of the heat stresses and at during the recovery incubation (Figures 2(a)-(c)). In addition, the respiration pulses exhibited by heat-stress samples at the beginning of the recovery incubation were higher than those of the corresponding controls (157.9% higher for SD<sub>3</sub>, versus 302% and 75.5% respectively for SD<sub>14</sub> and SD<sub>28</sub>) (Figures 2(a)-(c)).</p></sec><sec id="s3_3"><title>3.3. Effect of Heat Stress upon Carbon Mineralization</title><p>The carbon mineralization analyses were performed at the end of heat stresses (t0) and at the end of the 28-day recovery incubations (t28). The resulting mineralization rates were compared to those for control samples, via appropriate statistical analyses.</p><sec id="s3_3_1"><title>3.3.1. Effect upon Resistance</title><p>In the homefield samples, the SD<sub>3</sub> and SD<sub>14</sub> heat stresses did not affect C mineralization. The total amount of C mineralized was not significantly different between heat-stressed and control samples at the end of SD<sub>3</sub> and SD<sub>14</sub>. However, for SD<sub>28</sub> the C mineralization of the control samples was significantly higher (97.87%) than that of the heat-stressed soil. This result indicates an effect of heat stress (<xref ref-type="table" rid="table3">Table 3</xref>).</p><p>In the outfield samples, C mineralization was disrupted by SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub> heat stresses. Thus, the total amount of C mineralized was significantly different between the heat-stressed and control samples in all three treatments. At the end of SD<sub>3</sub> heat stress, the C mineralization rate of the heat-stressed sample was 83.08% higher than that of the control. However, at the end of SD<sub>14</sub> and SD<sub>28</sub> heat stress, the C mineralization rates of control samples were respectively 84.09% and 70.97% higher than those of the heat-stressed samples (<xref ref-type="table" rid="table3">Table 3</xref>).</p><table-wrap id="table2" ><label><xref ref-type="table" rid="table2">Table 2</xref></label><caption><title> Average of C mineralization (&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil) for the control and heat-stressed SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub> samples of homefield and outfield soils during the heat stress and the recovery days</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="3"  >Incubation times</th><th align="center" valign="middle"  rowspan="3"  >Treatments</th><th align="center" valign="middle"  colspan="2"  >Heat stress</th><th align="center" valign="middle"  colspan="2"  >Recovery</th></tr></thead><tr><td align="center" valign="middle"  colspan="4"  >C mineralization (&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil)</td></tr><tr><td align="center" valign="middle" >Homefield</td><td align="center" valign="middle" >Outfield</td><td align="center" valign="middle" >Homefield</td><td align="center" valign="middle" >Outfield</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SD<sub>3</sub></td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >2.22<sup>a</sup></td><td align="center" valign="middle" >1.22<sup>a</sup></td><td align="center" valign="middle" >1.46<sup>a</sup></td><td align="center" valign="middle" >0.50<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >8.83<sup>b</sup></td><td align="center" valign="middle" >1.44<sup>a</sup></td><td align="center" valign="middle" >1.67<sup>a</sup></td><td align="center" valign="middle" >0.60<sup>a</sup></td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SD<sub>14</sub></td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >1.84<sup>a</sup></td><td align="center" valign="middle" >0.94<sup>a</sup></td><td align="center" valign="middle" >0.96<sup>a</sup></td><td align="center" valign="middle" >0.37<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >6.96<sup>b</sup></td><td align="center" valign="middle" >0.85<sup>a</sup></td><td align="center" valign="middle" >0.99<sup>a</sup></td><td align="center" valign="middle" >0.80<sup>a</sup></td></tr><tr><td align="center" valign="middle"  rowspan="2"  >SD<sub>28</sub></td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >1.59<sup>a</sup></td><td align="center" valign="middle" >0.84<sup>a</sup></td><td align="center" valign="middle" >1.00<sup>a</sup></td><td align="center" valign="middle" >0.38<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >5.36<sup>b</sup></td><td align="center" valign="middle" >0.81<sup>a</sup></td><td align="center" valign="middle" >0.67<sup>a</sup></td><td align="center" valign="middle" >0.41<sup>a</sup></td></tr></tbody></table></table-wrap><p>Superscripts indicate significant differences between stress and control samples (p &lt; 0.05). n = 3.</p><table-wrap id="table3" ><label><xref ref-type="table" rid="table3">Table 3</xref></label><caption><title> Rates of C mineralization (&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil&#183;day<sup>−1</sup>) for the control and heat-stressed SD<sub>3</sub>. SD<sub>14</sub>. and SD<sub>28</sub> samples of homefield and outfield soils. Resistance (RS) and resilience (RL) indices are based on C mineralization rates for SD<sub>3</sub>. SD<sub>14</sub>. and SD<sub>28</sub> of homefield and outfield samples</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  rowspan="3"  >Incubation times</th><th align="center" valign="middle"  rowspan="3"  >Day</th><th align="center" valign="middle"  rowspan="3"  >Treatments</th><th align="center" valign="middle" >Homefield</th><th align="center" valign="middle" >Outfield</th><th align="center" valign="middle" ></th><th align="center" valign="middle" >Homefield</th><th align="center" valign="middle" >Outfield</th></tr></thead><tr><td align="center" valign="middle"  colspan="2"  >CO<sub>2</sub> Rates</td><td align="center" valign="middle"  colspan="3"   rowspan="2"  >Indices</td></tr><tr><td align="center" valign="middle"  colspan="2"  >&#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil&#183;day<sup>−1</sup></td></tr><tr><td align="center" valign="middle"  rowspan="4"  >SD<sub>3</sub></td><td align="center" valign="middle"  rowspan="2"  >t0</td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >1.50 (&#177;0.06)<sup>a</sup></td><td align="center" valign="middle" >0.65 (&#177;0.03)<sup>a</sup></td><td align="center" valign="middle"  rowspan="2"  >RS</td><td align="center" valign="middle"  rowspan="2"  >0.7</td><td align="center" valign="middle"  rowspan="2"  >0.1</td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >1.77 (&#177;0.27)<sup>a</sup></td><td align="center" valign="middle" >1.19 (&#177;0.005)<sup>b</sup></td></tr><tr><td align="center" valign="middle"  rowspan="2"  >t28</td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >1.38 (&#177;0.10)<sup>a</sup></td><td align="center" valign="middle" >0.37 (&#177;0.05)<sup>a</sup></td><td align="center" valign="middle"  rowspan="2"  >RL</td><td align="center" valign="middle"  rowspan="2"  >−0.31</td><td align="center" valign="middle"  rowspan="2"  >0.56</td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >0.88 (&#177;0.04)<sup>b</sup></td><td align="center" valign="middle" >0.22 (&#177;0.02)<sup>b</sup></td></tr><tr><td align="center" valign="middle"  rowspan="4"  >SD<sub>14</sub></td><td align="center" valign="middle"  rowspan="2"  >t0</td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >1.50 (&#177;0.20)<sup>a</sup></td><td align="center" valign="middle" >0.44 (&#177;0.047)<sup>a</sup></td><td align="center" valign="middle"  rowspan="2"  >RS</td><td align="center" valign="middle"  rowspan="2"  >0.80</td><td align="center" valign="middle"  rowspan="2"  >0.08</td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >1.66 (&#177;0.39)<sup>a</sup></td><td align="center" valign="middle" >0.07 (&#177;0.02)<sup>b</sup></td></tr><tr><td align="center" valign="middle"  rowspan="2"  >t28</td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >1.03 (&#177;0.08)<sup>a</sup></td><td align="center" valign="middle" >0.34 (&#177;0.03)<sup>a</sup></td><td align="center" valign="middle"  rowspan="2"  >RL</td><td align="center" valign="middle"  rowspan="2"  >−0.26</td><td align="center" valign="middle"  rowspan="2"  >0.76</td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >0.76 (&#177;0.11)<sup>b</sup></td><td align="center" valign="middle" >0.39 (&#177;0.39)<sup>a</sup></td></tr><tr><td align="center" valign="middle"  rowspan="4"  >SD<sub>28</sub></td><td align="center" valign="middle"  rowspan="2"  >t0</td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >0.94 (&#177;0.05)<sup>a</sup></td><td align="center" valign="middle" >0.31 (&#177;0.03)<sup>a</sup></td><td align="center" valign="middle"  rowspan="2"  >RS</td><td align="center" valign="middle"  rowspan="2"  >0.01</td><td align="center" valign="middle"  rowspan="2"  >0.17</td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >0.02 (&#177;0.10)<sup>b</sup></td><td align="center" valign="middle" >0.09 (&#177;0.03)<sup>b</sup></td></tr><tr><td align="center" valign="middle"  rowspan="2"  >t28</td><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >0.59 (&#177;0.06)<sup>a</sup></td><td align="center" valign="middle" >0.42 (&#177;0.23)<sup>a</sup></td><td align="center" valign="middle"  rowspan="2"  >RL</td><td align="center" valign="middle"  rowspan="2"  >0.63</td><td align="center" valign="middle"  rowspan="2"  >−0.13</td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >0.38 (&#177;0.08)<sup>b</sup></td><td align="center" valign="middle" >0.14 (&#177;0.03)<sup>b</sup></td></tr></tbody></table></table-wrap><p>Superscripts indicate significant differences between heat-stress and control treatments (p &lt; 0.05). n = 3.</p></sec><sec id="s3_3_2"><title>3.3.2. Effect upon Resilience</title><p>In the case of homefield samples, C rates in heat-stressed samples remained significantly lower (p &lt; 0.05) than those of the control samples even after the 28-day recovery incubation. Specifically, the mineralization rate in the control soil was 36.23% higher for SD<sub>3</sub>, versus 26.21% higher for SD<sub>14</sub> and 35.59% higher for SD<sub>28</sub> (<xref ref-type="table" rid="table3">Table 3</xref>).</p><p>In the case of outfield soils, the C mineralization of the heat-stressed SD<sub>14</sub> sample was not significantly different, after the 28-day incubation, from the control’s rate. This result indicates a recovery of C mineralization. In contrast, the mineralization rates of the heat-stressed SD<sub>3</sub> and SD<sub>28</sub> samples were significantly different (again, after the 28-day incubation) from those of the control samples. Specifically, the control-sample’s rate was 40.54% for SD<sub>3</sub>, and 66.67% higher for SD<sub>28</sub> (<xref ref-type="table" rid="table3">Table 3</xref>).</p></sec></sec><sec id="s3_4"><title>3.4. Resistance (RS) and Resilience (RL) Indices of C-CO<sub>2</sub> Respiration</title><p>These indices, proposed by Orwin and Wardle [<xref ref-type="bibr" rid="scirp.123314-ref5">5</xref>] , are generic ones that can be calculated from different types of data to highlight moderate effects upon function that might not be revealed by simple statistical analyses. We calculated these indices from C-mineralization results, as described in Section 2.4.</p><sec id="s3_4_1"><title>3.4.1. Resistance</title><p>In the homefield soils, the RS indices for the SD<sub>3</sub> and SD<sub>14</sub> heat stresses were 0.70 and 0.80 respectively. These high values indicate that the microbial communities were not affected significantly by the heat stress. However, the RS value for SD<sub>28</sub> was 0.01, indicating an effect of heat stress (<xref ref-type="table" rid="table3">Table 3</xref>).</p><p>In the outfield soil, the RS indices for SD<sub>3</sub>, SD<sub>14</sub>, and SD<sub>28</sub> were respectively 0.10, 0.08, and 0.17. Those low values indicate an effect of heat stress whatever the stress duration considered (<xref ref-type="table" rid="table3">Table 3</xref>).</p></sec><sec id="s3_4_2"><title>3.4.2. Resilience</title><p>In the homefield soils, the RL indices for SD<sub>3</sub> and SD<sub>14</sub> were low and negative (−0.31 and −0.26 respectively), indicating a lower rate of recovery than in the SD<sub>28</sub> sample, for which RL was 0.63. The latter high, positive value indicates a progressive recovery of C mineralization (<xref ref-type="table" rid="table3">Table 3</xref>). In the outfield soils, the RL indices of SD<sub>3</sub> and SD<sub>14</sub> were high (0.61 and 0.76 respectively), indicating a progressive recovery, in contrast to the lower recovery rate that can be inferred from the SD<sub>28</sub> sample’s low, negative value (−0.13) (<xref ref-type="table" rid="table3">Table 3</xref>).</p></sec></sec><sec id="s3_5"><title>3.5. α-Diversities</title><p>Using &gt;97% sequence identity, the high-quality reads were clustered into operational taxonomic units (OTUs). The bacterial and fungal α-diversities of homefield soils and outfield soils (as quantified by richness and the Shannon and Simpson indices) were quite different (<xref ref-type="table" rid="table4">Table 4</xref>).</p><p>In the homefield soils, bacterial OTU richness was significantly greater in the heat-stressed soils than in the control soils. In contrast, fungal OTU richness was significantly greater in the controls. In the outfield soils, OTU richness was significantly greater in the control soils for the bacteria as well as the fungi. These results indicate that in the homefield soils, heat stress increased the bacterial richness, but decreased the richness of fungi, whereas heat stress reduced the richness of both types of microbes in outfield soils.</p><table-wrap id="table4" ><label><xref ref-type="table" rid="table4">Table 4</xref></label><caption><title> Bacterial and fungal diversity indices for SD<sub>28</sub> of homefield and SD<sub>14</sub> of outfield samples under control and heat-stress treatment</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >samples</th><th align="center" valign="middle" >Richness</th><th align="center" valign="middle" >Shannon</th><th align="center" valign="middle" >Simpson</th></tr></thead><tr><td align="center" valign="middle"  colspan="4"  >Bacteria 16S rDNA</td></tr><tr><td align="center" valign="middle"  colspan="2"  >Homefield</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >272.33<sup>a</sup></td><td align="center" valign="middle" >2.60<sup>a</sup></td><td align="center" valign="middle" >0.84<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >620.67<sup>b</sup></td><td align="center" valign="middle" >4.26<sup>b</sup></td><td align="center" valign="middle" >0.95<sup>b</sup></td></tr><tr><td align="center" valign="middle" >Outfield</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >779.33<sup>a</sup></td><td align="center" valign="middle" >5.25<sup>a</sup></td><td align="center" valign="middle" >0.97<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >687.67<sup>b</sup></td><td align="center" valign="middle" >3.95<sup>b</sup></td><td align="center" valign="middle" >0.91<sup>b</sup></td></tr><tr><td align="center" valign="middle"  colspan="4"  >Fungi 18S rDNA</td></tr><tr><td align="center" valign="middle"  colspan="2"  >Homefield</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >100.67<sup>a</sup></td><td align="center" valign="middle" >2.80<sup>a</sup></td><td align="center" valign="middle" >0.86<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >32.33<sup>b</sup></td><td align="center" valign="middle" >1.15<sup>a</sup></td><td align="center" valign="middle" >0.40<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Outfield</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr><tr><td align="center" valign="middle" >Control</td><td align="center" valign="middle" >102.67<sup>a</sup></td><td align="center" valign="middle" >2.25<sup>a</sup></td><td align="center" valign="middle" >0.77<sup>a</sup></td></tr><tr><td align="center" valign="middle" >Heat</td><td align="center" valign="middle" >21.33<sup>b</sup></td><td align="center" valign="middle" >0.74<sup>b</sup></td><td align="center" valign="middle" >0.42<sup>b</sup></td></tr></tbody></table></table-wrap><p>Superscripts indicate significant differences between heat-stressed and control samples according to software R (3.1.3). (p &lt; 0.05). n = 3.</p><p>The specific diversity, as quantified by the Shannon and Simpson diversity indices, varied across the heat-stress treatments. In the homefield soils, these indices and the OTU richness showed the same trends for the bacterial community. For fungi community in the homefield soils, the Shannon and Simpson indices for heat-stressed samples were not significantly different from those of control samples. However, in the outfield soils the values of the indices for fungi were higher in control samples than in the heat-stressed ones (<xref ref-type="table" rid="table4">Table 4</xref>).</p></sec><sec id="s3_6"><title>3.6. Taxonomic Composition of Bacteria and Fungi Communities</title><p>In homefield and outfield soils alike, heat stress changed the relative abundances (as compared to control samples). The taxonomic inventory of the sequences identified 14 bacterial and 7 fungal phyla. The dominant bacterial phyla (relative abundance &gt; 1%) were Firmicutes, Proteobacteria, Chloroflexi, Actinobacteria, Acidobacteria, Bacteroidetes, Gemmatimonadetes, Planctomycetes, and WPS-2 (<xref ref-type="fig" rid="fig3">Figure 3</xref>(a)). The major phyla of fungi were Ascomycota, Basidiomycota, Chytridiomycota, and Mucoromycota (<xref ref-type="fig" rid="fig3">Figure 3</xref>(b)).</p><p>At the class level, we found thirty bacteria classes, all of which were present in every sample, and belonged mostly to the phyla Firmicutes, Chloroflexi, Proteobacteria, Acidobacteria, and Actinobacteria. In the non-stressed samples from homefield, the bacterial and fungal classes Bacteroidia, Blastocatellia, Gemmatimonadetes, Nitrososphaeria, δ-Proteobacteria, Chytridiomycetes, and Sordariomycetes were significantly more dominant than in the non-stressed samples from outfield. In the latter samples, the dominant classes were Acidobacteriia, Bacilli, Ktedonobacteria, WPS-2-unknown-class, Dothideomycetes, and Glomeromycetes (<xref ref-type="fig" rid="fig3">Figure 3</xref>(c), <xref ref-type="fig" rid="fig3">Figure 3</xref>(d))).</p></sec><sec id="s3_7"><title>3.7. Changes in Microbial Population under Heat Stress</title><p>In the homefield soils, heat stress reduced the relative abundances of the following bacteria taxa significantly: Acidobacteriia (from 1.3% relative abundance to 0%); α-proteobacteria (13.5% to 1.75%), γ-proteobacteria (14.51% - 0.05%), Bacteroidia (2.66 - 0.02), Blastocatellia (2.24% - 0.5%), Thermoleophilia (2.37% - 0.29%), WPS-2 (0.2% - 0.0%). The relative abundances of two fungi taxa also decreased: Dothideomycetes (25.68% - 7.25%) and Eurotiomycetes (8.43% - 3.67%). In contrast, the relative abundances of the following taxa increased significantly: the bacteria Actinobacteria (6.11% - 18.73%), Bacilli (42.08% - 56.58%), Chloroflexia (0.82% - 19.62%), and Clostridia (0.46% - 1.70%), as well the fungi taxa Sordariomycetes (44.41% - 69.92%) and Glomeromycetes (0.02% - 1.20%) (<xref ref-type="fig" rid="fig4">Figure 4</xref>(a), <xref ref-type="fig" rid="fig4">Figure 4</xref>(b)).</p><p>In the outfield soils, heat stress reduced the relative abundances of the following bacteria taxa significantly: Acidobacteriia (1.17% - 0.0%), Actinobacteria (10.50% - 0.11%), Chloroflexia (0.24% - 0%), Thermoleophilia (2.45% - 0%), WPS-2 (2.41% - 0%). The relative abundances of four fungi taxa also decreased: Chytridiomycetes (0.34% - 0%), Dothideomycetes (72.81% - 0.30%), Glomeromycetes (0.11% - 0%), and Sordariomycetes (8.09% - 0.27%) (<xref ref-type="fig" rid="fig4">Figure 4</xref>(a), <xref ref-type="fig" rid="fig4">Figure 4</xref>(b)). However, the relative abundances of the fungi taxa Eurotiomycetes increased significantly (13.82% - 91.84%), as did the abundances of the bacteria taxa α-Proteobacteria (10.35% - 26.74%), γ-Proteobacteria (11.10% - 14.32%), and Clostridia (0.6% - 0.78%), (<xref ref-type="fig" rid="fig4">Figure 4</xref>(a), <xref ref-type="fig" rid="fig4">Figure 4</xref>(b)). Comparisons between heat-stressed outfield soils samples and the controls found no significant change in the relative abundances of the most dominant Bacilli class (54.01% in the controls, versus 53.53% in heat-stressed samples). Bacilli in outfield soils seemed to be insensitive to heat stress (<xref ref-type="fig" rid="fig4">Figure 4</xref>(c), <xref ref-type="fig" rid="fig4">Figure 4</xref>(d)).</p><p>At the species level, we found that the following bacteria species dominated in the homefield control soils: Bacillus fumarioli (11.76%), Ammoniphilus resinae (5.81%), Microvirga sp (4.29%), and Flavisolibacter sp. (3.77%). Heat stress significantly reduced the relative abundance of Microvirga sp. and Flavisolibacter sp, but allowed a significant increase in the relative abundances of Sphaerobacter thermophilus, Aeromicrobium sp., and Cohnella sp (<xref ref-type="fig" rid="fig4">Figure 4</xref>(c)). The most dominant fungal species in the homefield control soils were Phaeoacremonium minimum (22.21%), Chaetomium sp. (21.49%), Pleosporales sp (8.36%), and Westerdykella cylindrica (5.20%). Heat stress reduced the relative abundances of those dominant species, but significantly increased the relative abundance of Sarocladium sp. (0.01% - 80.05%) (<xref ref-type="fig" rid="fig4">Figure 4</xref>(d)).</p><p>In the outfield control soils, the most dominant bacteria species were Bacillus fumarioli (24.46%), Paraburkholderia fungorum (8.33%), Tumebacillus sp. (6.90%), Arthrobacter sp. (7.28%), Ammoniphilus resinae (6.61%), and Sphingomonas echinoides (6.51%). Heat stress significantly reduced the relative abundances of Ammoniphilus resinae, Bacillus fumarioli, and Arthrobacter sp., while significantly increasing those of Tumebacillus sp., Sphingomonas echinoides, and Cohnelle sp. (<xref ref-type="fig" rid="fig4">Figure 4</xref>(c)). The most dominant fungal species in the outfield soils control were Boeremia exigua var. exigua (39.17%), Alternaria alternata (16.67%), Rhodotorula sp. (6.57%), and Penicillium chrysogenum (6.52%). Heat stress significantly reduced the dominant species, and allowed Aspergillus lentulus and Exophiala oligosperma to become dominant (<xref ref-type="fig" rid="fig4">Figure 4</xref>(d)).</p></sec></sec><sec id="s4"><title>4. Discussion</title><sec id="s4_1"><title>4.1. Differences between Properties and C-CO<sub>2</sub> Mineralization in Homefield and Outfield Soils</title><p>Some but not all of the responses of the homefields’ microbial communities differed from those of outfields. In addition, some responses of heat-stressed soils differed from those of the controls. For example, heat-stressing of both soils produced a high biological activity that did not occur in the controls. However, the C mineralization in homefield soils was greater than in outfield soils. These results are consistent with those of &#197;gren and Wetterstedt [<xref ref-type="bibr" rid="scirp.123314-ref45">45</xref>] , who attribute them to a strong, temperature-induced C mineralization, and thus to an increase in basal respiration of the microbial community. Franco-Andreu et al. [<xref ref-type="bibr" rid="scirp.123314-ref46">46</xref>] explains the same results by citing mineralization of labile carbon an immediate source of energy for microorganisms.</p><p>For homefield soils as well as outfield soils, and for all heat-stress durations, C-CO<sub>2</sub> accumulations at the end of incubation were higher than those of the controls. As one example, the accumulations (taken as a class) for homefield soils that received the SD<sub>28</sub> heat stress exceeded those of the controls by 58.25 &#181;g C-CO<sub>2</sub> g<sup>−1</sup> soil. However, accumulations for outfield soils that received SD<sub>28</sub> exceeded those of the controls by only 2.45 C-CO<sub>2</sub> g<sup>−1</sup> soil. Chotte et al. [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] obtained similar results in their research on manured and non-manured soils: the C-CO<sub>2</sub> accumulation of a heat-stressed manured soil exceeded that of the control by 68.8, &#181;g C-CO<sub>2</sub> g<sup>−1</sup>, versus 15.2 for the non-manured soil. That difference is explained by the high level of organic C in Chotte et al. [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] soils (20.1 and 18.3 mg&#183;g<sup>−1</sup> soil, for manured and unmanured soils respectively). By comparison, the organic C contents in our soils were 10.5 and 3.9 mg&#183;g<sup>−1</sup> soil in homefield and outfield samples, respectively.</p><p>Chotte et al. [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] work also agrees with our finding that C mineralization is significantly higher in soil amended with OM (homefield) than in the unamended (outfield). Specifically, Chotte et al. [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] found that the respiration of samples amended with OM is significantly higher than for unamended samples. &#197;gren and Wetterstedt [<xref ref-type="bibr" rid="scirp.123314-ref45">45</xref>] attribute the difference in C mineralization to temperature-induced solubilization of organic compounds.</p><p>The decrease in soil microbial respiration at the end of incubation is explained by a decrease in soil’s labile C fractions due to decomposition during heat stress [<xref ref-type="bibr" rid="scirp.123314-ref47">47</xref>] . Davet [<xref ref-type="bibr" rid="scirp.123314-ref48">48</xref>] agrees and states that biological activity decreases with resource depletion after 2 to 3 weeks at a level equal to or lower than that of the control soil. The slight recovery of microbial activity that occurred in our samples at the beginning of recovery confirms the results of Pailler [<xref ref-type="bibr" rid="scirp.123314-ref49">49</xref>] , who attributed it to a significant development of microbial metabolism. At the end of a disturbance (according to that author), the microbial community increases its basal respiration in order to resume metabolic activities.</p></sec><sec id="s4_2"><title>4.2. Stability of the Soil Microbial Biomass</title><p>C mineralization in homefield soils that underwent SD<sub>3</sub> and SD<sub>14</sub> was not statistically different from that of the controls. This result suggests that the microbial biomass resisted the SD<sub>3</sub> and SD<sub>14</sub> heat stresses. However, and in contrast to the raw-data comparison, the RS indices that we calculated from C-mineralization data did not show complete resistance to those two durations of heat stress. Furthermore, none of the RS values for homefield and outfield show complete resistance of the microbial biomass to any of the 3 durations. These findings are similar to those of Chotte et al. [<xref ref-type="bibr" rid="scirp.123314-ref1">1</xref>] , who found that OM inputs to homefield did not modify the microbial community’s resistance. Ben Sassi [<xref ref-type="bibr" rid="scirp.123314-ref13">13</xref>] also states that OM inputs do not improve microbial stability to an important degree. In contrast, Wada and Toyota [<xref ref-type="bibr" rid="scirp.123314-ref21">21</xref>] , show that the resistance of biological functions is higher in the presence of OM. The discrepancy between that result and our own could be explained by the organo-mineral amendment that was used on fields that were studied by Wada and Toyota.</p><p>In our own study, microbial communities in the OM-rich soil of homefield had high resistance to SD<sub>3</sub> and SD<sub>14</sub> heat stresses (RS = 0.70 and 0.80 respectively for SD<sub>3</sub> and SD<sub>14</sub>). Therefore, those durations of heat stress do not disrupt all biological activities in the homefield samples. In contrast, RS indices for outfield soils were low for all three heat-stress durations. These results are similar to those of Griffiths et al. [<xref ref-type="bibr" rid="scirp.123314-ref50">50</xref>] , who found thermal-stress resistance in soils amended with OM. However, our results show that the SD<sub>28</sub> heat stress did disrupt microbial activity of homefield soils (RS = 0.01). Thus, the response of microorganisms to heat stress depends upon the duration of the stress [<xref ref-type="bibr" rid="scirp.123314-ref13">13</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref14">14</xref>] .</p><p>The resilience indices (RL) of homefield and outfield soils show no recovery of the microbial biomass for any of the 3 durations of heat stress. This result is similar to those of Fierer and Schimel [<xref ref-type="bibr" rid="scirp.123314-ref51">51</xref>] , who observed no resilience after 6 weeks of recovery. The absence of complete resilience may be due to insufficient recovery time. For example, Kumar et al. [<xref ref-type="bibr" rid="scirp.123314-ref42">42</xref>] found that microorganisms needed 56 days to recover fully. Too, the extreme temperature of 60˚C can impede recovery by removing a large proportion of the active microorganisms from the soil [<xref ref-type="bibr" rid="scirp.123314-ref12">12</xref>] .</p><p>However, in the present study the RL indices do show a beginning of resilience in outfield soils after SD<sub>3</sub> (RL = 0.56) and SD<sub>14</sub> (RL = 0.76), and in homefield soils after SD<sub>28</sub> (RL = 0.63). Similarly B&#233;rard et al. [<xref ref-type="bibr" rid="scirp.123314-ref31">31</xref>] found no complete resilience of microbial communities at the end of recovery. The partial recovery after SD<sub>28</sub> in homefield soils (versus the non-recovery in outfield soils) is explained by the organic amendment. Indeed, the soils richest in C are more resilient in response to intense heat stress [<xref ref-type="bibr" rid="scirp.123314-ref20">20</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref21">21</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref52">52</xref>] .</p></sec><sec id="s4_3"><title>4.3. Microbial Biomass Diversity and Abundance</title><p>In our nutrient-poor outfield soils, heat stress not only decreased the microbial α-diversity significantly, but altered the abundances of most of the microbial taxa. However, only the fungal diversity decreased in the homefield soils. As will be explained below, these differences between the two soils may be attributable to several phenomena that interact in subtle ways. Those phenomena include the effects of heat upon the soils’ labile C contents, as well as the ranges of metabolic and functional flexibility within the two soils’ microbial communities.</p><p>In both soils, fungal and bacterial diversity was lower in the heat-stressed samples than in the controls. The decrease was greater in outfield soils. That result is consistent with B&#233;caert et al.’s [<xref ref-type="bibr" rid="scirp.123314-ref38">38</xref>] observation that heat stress can kill microbial communities, and that the impact tends to be greater in lower-OM soils. The high microbial diversity in the homefield soils is related to the legacy effect of OM, a substance that microorganisms depend upon to support their activity [<xref ref-type="bibr" rid="scirp.123314-ref8">8</xref>] .</p><p>In our study, OM’s legacy effect manifested itself in differences between the changes in taxonomic compositions of the two soils’ respective microbial communities. Heat stress reduced the relative abundances of homefield microbial communities that belong to α-proteobacteria, γ-proteobacteria, Bacteroidia, and Eurotiomycetes. In contrast, heat stress increased the abundances of those same microbes in outfield soils. One explanation for the decreased abundances in homefield soils may be that soil’s C resources diminished during heat stress, thereby exacerbating the vulnerability of the copiotrophic communities that normally proliferate in such resource-rich soils [<xref ref-type="bibr" rid="scirp.123314-ref53">53</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref54">54</xref>] . The effect of heat stress upon C resources may also explain the outfield soils’ increased abundances of copiotrophs: heat stress probably promoted decomposition of recalcitrant SOM, thereby enriching soils with labile C. The increased abundance of copiotrophs in heat-stressed outfield soils is consistent with Davet [<xref ref-type="bibr" rid="scirp.123314-ref48">48</xref>] , finding that some species of Eurotiomycetes can grow at temperatures up to 60˚C [<xref ref-type="bibr" rid="scirp.123314-ref55">55</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref56">56</xref>] .</p><p>An interesting contrast to that finding is offered by the relative abundances of Actinobacteria, Chloroflexia, and Sordariomycetes, which are highly stress-tolerant [<xref ref-type="bibr" rid="scirp.123314-ref57">57</xref>] . In the homefield soils, heat stress increased the abundances of these communities, perhaps by reducing competition from heat-sensitive microbes. In addition, the metabolic versatility of Actinobacteria, Chloroflexia, and Sordariomycetes enables them to develop in soils where recalcitrant carbon prevails [<xref ref-type="bibr" rid="scirp.123314-ref58">58</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref59">59</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref60">60</xref>] . For example, the Chloroflexia class is dominated by Sphaerobacter thermophilus species, whose optimal growth temperature is 55˚C - 60˚C [<xref ref-type="bibr" rid="scirp.123314-ref61">61</xref>] .</p><p>The above-mentioned metabolic versatility of microbes must be borne in mind when interpreting our RL indices, which were calculated from C-mineralization data (a measure of the microbial community’s functioning, rather than its taxonomic composition). As Preece et al. [<xref ref-type="bibr" rid="scirp.123314-ref62">62</xref>] notes, a partial resilience such as that which occurred in both of our soils may accrue from the microbial communities’ capacities for functional redundancy. Similarly, Riah-Anglet et al. [<xref ref-type="bibr" rid="scirp.123314-ref37">37</xref>] , found that heat stress does not affect bacterial abundances in soils that are rich in Actinobacteria and Bacteroidetes. For example, the variable and versatile physiology of Proteobacteria gives them a competitive advantage in various ecological niches [<xref ref-type="bibr" rid="scirp.123314-ref63">63</xref>] . As the continuing heat stress reduces competition from other species for soil resources [<xref ref-type="bibr" rid="scirp.123314-ref37">37</xref>] , new stress-resistant microbial communities with greater resilience and functional stability can develop [<xref ref-type="bibr" rid="scirp.123314-ref64">64</xref>] . In the event of a disturbance, these communities may either develop adaptation strategies (resistance) [<xref ref-type="bibr" rid="scirp.123314-ref65">65</xref>] , or remain inactive while waiting for conditions to become favourable (resilience) [<xref ref-type="bibr" rid="scirp.123314-ref66">66</xref>] .</p><p>In our study, the representatives from the most dominant bacterial class (Bacilli) seemed to be insensitive to heat stress, as evidenced by the fact that the relative abundance of that class did not decrease in the outfield soils. Nor did heat stress change the taxonomic composition of that class in outfield soils. Allison and Martiny [<xref ref-type="bibr" rid="scirp.123314-ref67">67</xref>] , define a microbial community’s composition as resistant if that composition is difficult to perturb. That resistance is enhanced by high degrees of metabolic flexibility and physiological tolerance to changing environmental conditions Allison and Martiny [<xref ref-type="bibr" rid="scirp.123314-ref67">67</xref>] . The heat-stress resistance of Bacilli in our study is consistent with previous studies stresses [<xref ref-type="bibr" rid="scirp.123314-ref53">53</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref60">60</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref68">68</xref>] that posit the production of heat-resistant endospores by Bacillus species as a means of resisting environmental stresses. As K&#228;mpfer et al. [<xref ref-type="bibr" rid="scirp.123314-ref69">69</xref>] noted the Bacilli class is dominated by Cohnella sp, Lysinibacillus macrolides, Aeromicrobium sp., and Sphingomonas echinoides, which are able to grow at temperatures between 20 and 55˚C. In our present study, the Actinobacteria, Chloroflexia, and Sordariomycetes taxa (in homefield) and the Bacilli, α-proteobacteria, γ-proteobacteria, and Eurotiomycetes (in outfield) demonstrated their ability to resist heat stress via different strategies that members of those taxa employ to resist environmental stresses, and adapt to them.</p></sec></sec><sec id="s5"><title>5. Conclusions</title><p>This study focused on the effect of heat-stress duration upon the stability (resistance and resilience) and diversity of microbial communities in fields that received different amounts and types of organic amendments. The responses of microbial community composition to heat stress varied according to agricultural practices and the duration of the stress. Communities were not stable in either soil, and microbial α-diversity decreased at different heat stress durations. Communities in the OM-rich homefield soils showed a partial resistance to shorter-duration stresses (SD<sub>3</sub> and SD<sub>14</sub>), and also showed the beginnings of resilience even after the longest stress (SD<sub>28</sub>). In contrast, microbial communities in the low-OM outfield soils displayed no resistance to any of the three heat-stresses durations, although the beginnings of resilience were noted after SD<sub>3</sub> and SD<sub>14</sub>.</p><p>Even in the OM-rich outfield soils, the communities did not show total resistance to 60˚C, nor was resilience complete after the 28-day recovery. Nevertheless, soil OM does appear to increase the resilience of the microbial community composition in the face of long-duration heat stress. The same heat stress that decreased the microbial diversity also brought about microbial communities that are specific to each farming practice, and which could contribute to the resilience and/or resistance of the respective soils.</p><p>Future research should focus on the effect of drought and drought-heat stress on the resilience of soil microbial communities in the outfields and homefields cultivation practices of the groundnut basin.</p></sec><sec id="s6"><title>Funding</title><p>The research leading to this study received funding from the U.K.’s Natural Environment Research Council/Department for International Development (NERC/ DFID) Future Climate for Africa (FCFA) program, under the AMMA-2050 (Grant Numbers NE/M020126/1).</p></sec><sec id="s7"><title>Acknowledgements</title><p>This work is dedicated to Prof. Mariama Dalanda Diallo who took part in it and left us too soon. The authors are thankful to Laurent Cournac and Lydie Lardy (IRD), Cheikh Oumar BA (IPAR), Yacine Ndour-Badiane (LNRPV/FAO), Lamine Sagna, Mayecor Diouf, Moutapha San&#233;, Oumar Faye, Mariama Gueye, Lamine Dieng, the late Amadou DIOP and Pourmera GASSAMA (LEMSAT) and all the staff of LMI IESOL, IPAR and ISRA/LNRPV for their technical, financial and administrative support during this research. English language was editing and review services supplied by James Smith (nitac14b@yahoo.com).</p></sec><sec id="s8"><title>Conflicts of Interest</title><p>The authors declare no conflicts of interest regarding the publication of this paper.</p></sec><sec id="s9"><title>Cite this paper</title><p>Ciss, P.N., Tall, L., Sall, S.N., Diallo, M.D., Fernandes, P., Dieye, T., Mbengue, M., Gaglo, E. and Assigbetse, K. (2023) How Does Heat-Stress Intensity Affect the Stability of Microbial Activity and Diversity of Soil Microbial Communities in Outfields and Homefields’ Cultivation Practices in the Senegalese Groundnut Basin? Open Journal of Soil Science, 13, 97-123. https://doi.org/10.4236/ojss.2023.132005</p></sec><sec id="s10"><title>Supplementary Material 1. Temperature of the Soil at the Surface Horizon (0 - 5 cm) in the Groundnut Basin Using CP4-Africa Simulations (AMMA-CATCH) [<xref ref-type="bibr" rid="scirp.123314-ref70">70</xref>] [<xref ref-type="bibr" rid="scirp.123314-ref71">71</xref>]</title><disp-formula id="scirp.123314-formula1"><graphic  xlink:href="//html.scirp.org/file/4-1660851x9.png?20230224170638191"  xlink:type="simple"/></disp-formula></sec><sec id="s11"><title>Supplementary Material 2. Geographical Coordinates of Six Homefields and Six Outfields Individual Sampled</title></sec><sec id="s12"><title>Supplementary Material 3. Physico-Chemical Characteristics of Homefields and Outfields Soils</title><p>Superscripts indicate significant differences between homefields and outfields (p &lt; 0.05) n = 6, CEC: cationic exchange capacity; Pass: assimilable phosphorus; N: nitrogen; C: carbon; SOM: Soil Organic Matter.</p></sec></body><back><ref-list><title>References</title><ref id="scirp.123314-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Chotte, J.L., Diouf, M.N., Assigbetsé, K., Lesueur, D., Rabary, B. and Sall, S.N. (2013) Unexpected Similar Stability of Soil Microbial CO2 Respiration in 20-Year Manured and in Unmanured Tropical Soils. Environmental Chemistry Letters, 11, 135-142. https://doi.org/10.1007/s10311-012-0388-9</mixed-citation></ref><ref id="scirp.123314-ref2"><label>2</label><mixed-citation publication-type="other" xlink:type="simple">Quéré, C.L., Raupach, M.R., Canadell, J.G., Marland, G., Bopp, L., Ciais, P., Conway, T.J., Doney, S.C., Feely, R.A., Foster, P., Friedlingstein, P., Gurney, K., Houghton, R.A., House, J.I., Huntingford, C., Levy, P.E., Lomas, M.R., Majkut, J., Metzl, N., Ometto, J.P., Peters, G.P., Prentice, I.C., Randerson, J.T., Running, S.W., Sarmiento, J.L., Schuster, U., Sitch, S., Takahashi, T., Viovy, N., Van Der Werf, G.R. and Woodward, F.I. (2009) Trends in the Sources and Sinks of Carbon Dioxide. Nature Geoscience, 2, 831-836. https://doi.org/10.1038/ngeo689</mixed-citation></ref><ref id="scirp.123314-ref3"><label>3</label><mixed-citation publication-type="other" xlink:type="simple">Li, J.T., Wang, J.J., Zeng, D.H., Zhao, S.Y., Huang, W.L., Sun, X.K. and Hu, Y.L. (2018) The Influence of Drought Intensity on Soil Respiration during and after Multiple Drying-Rewetting Cycles. Soil Biology and Biochemistry, 127, 82-89.  
https://doi.org/10.1016/j.soilbio.2018.09.018</mixed-citation></ref><ref id="scirp.123314-ref4"><label>4</label><mixed-citation publication-type="other" xlink:type="simple">Griffiths, B.S. and Philippot, L. (2013) Insights into the Resistance and Resilience of the Soil Microbial Community. Federation of European Microbiological Societies, 37, 112-129. https://doi.org/10.1111/j.1574-6976.2012.00343.x</mixed-citation></ref><ref id="scirp.123314-ref5"><label>5</label><mixed-citation publication-type="other" xlink:type="simple">Orwin, K.H. and Wardle, D.A. (2004) New Indices for Quantifying the Resistance and Resilience of Soil Biota to Exogenous Disturbances. Soil Biology and Biochemistry, 36, 1907-1912. https://doi.org/10.1016/j.soilbio.2004.04.036</mixed-citation></ref><ref id="scirp.123314-ref6"><label>6</label><mixed-citation publication-type="other" xlink:type="simple">Guillot, E., Hinsinger, P., Dufour, L., Roy, J. and Bertrand, I. (2019) With or without Trees: Resistance and Resilience of Soil Microbial Communities to Drought and Heat Stress in a Mediterranean Agroforestry System. Soil Biology and Biochemistry, 129, 122-135. https://doi.org/10.1016/j.soilbio.2018.11.011</mixed-citation></ref><ref id="scirp.123314-ref7"><label>7</label><mixed-citation publication-type="other" xlink:type="simple">Vries, F.T.D. and Shade, A. (2013) Controls on Soil Microbial Community Stability under Climate Change. Frontiers in Microbiology, 4, 265.  
https://doi.org/10.3389/fmicb.2013.00265</mixed-citation></ref><ref id="scirp.123314-ref8"><label>8</label><mixed-citation publication-type="other" xlink:type="simple">Ng, E.L., Patti, A.F., Rose, M.T., Schefe, C.R., Smernik, R.J. and Cavagnaro, T.R. (2015) Do Organic Inputs Alter Resistance and Resilience of Soil Microbial Community to Drying? Soil Biology and Biochemistry, 81, 58-66.  
https://doi.org/10.1016/j.soilbio.2014.10.028</mixed-citation></ref><ref id="scirp.123314-ref9"><label>9</label><mixed-citation publication-type="other" xlink:type="simple">Dione, M., Diop, O., Dièye, P.N., Ba, D.N. and Ndao, B. (2008) Caractérisation et typologie des exploitations agricoles familiales du Sénégal. In ISRA/UNIVAL 8, 1-31.</mixed-citation></ref><ref id="scirp.123314-ref10"><label>10</label><mixed-citation publication-type="other" xlink:type="simple">Sall, M., Samb, A.A., Tall, S.M. and Tandian, A. (2011) Changements climatiques, stratégies d’adaptation et mobilités. Evidence à partir de quatres sites au Sénégal. International Institute for Environment and Development (IIED), London, 49 p.</mixed-citation></ref><ref id="scirp.123314-ref11"><label>11</label><mixed-citation publication-type="other" xlink:type="simple">Acosta-Martinez, V., Moore-Kucera, J., Cotton, J., Gardner, T. and Wester, D. (2014) Soil Enzyme Activities during the 2011 Texas Record Drought/Heat Wave and Implications to Biogeochemical Cycling and Organic Matter Dynamics. Applied Soil Ecology, 75, 43-51. https://doi.org/10.1016/j.apsoil.2013.10.008</mixed-citation></ref><ref id="scirp.123314-ref12"><label>12</label><mixed-citation publication-type="other" xlink:type="simple">Acosta-Martínez, V., Cotton, J., Gardner, T., Moore-Kucera, J., Zak, J., Wester, D. and Cox, S. (2014) Predominant Bacterial and Fungal Assemblages in Agricultural Soils during A Record Drought/Heat Wave and Linkages to Enzyme Activities of Biogeochemical Cycling. Applied Soil Ecology, 84, 69-82.  
https://doi.org/10.1016/j.apsoil.2014.06.005</mixed-citation></ref><ref id="scirp.123314-ref13"><label>13</label><mixed-citation publication-type="other" xlink:type="simple">Ben Sassi, M. (2012) Impacts d’apports de composts de déchets urbains sur la résistance et la résilience de la microflore du sol à des évènements de type canicule/sécheresse. In Sciences agricoles. Université d’Avignon, Avignon.</mixed-citation></ref><ref id="scirp.123314-ref14"><label>14</label><mixed-citation publication-type="other" xlink:type="simple">Bérard, A., Bouchet, T., Sévenier, G., Pablo, A.L. and Gros, R. (2011) Resilience of Soil Microbial Communities Impacted by Severe Drought and High Temperature in the Context of Mediterranean Heat Waves. European Journal of Soil Biology, 47, 333-342. https://doi.org/10.1016/j.ejsobi.2011.08.004</mixed-citation></ref><ref id="scirp.123314-ref15"><label>15</label><mixed-citation publication-type="other" xlink:type="simple">Bandick, A.K. and Dick, R.P. (1999) Field Management Effects on Soil Enzyme Activities. Soil Biology and Biochemistry, 31, 1471-1479.  
https://doi.org/10.1016/S0038-0717(99)00051-6</mixed-citation></ref><ref id="scirp.123314-ref16"><label>16</label><mixed-citation publication-type="other" xlink:type="simple">Bastida, F., Torres, I. F., Hernández, T. and García, C. (2017) The Impacts of Organic Amendments: Do They Confer Stability against Drought on the Soil Microbial Community? Soil Biology and Biochemistry, 113, 173-183.  
https://doi.org/10.1016/j.soilbio.2017.06.012</mixed-citation></ref><ref id="scirp.123314-ref17"><label>17</label><mixed-citation publication-type="other" xlink:type="simple">Hueso, S., Hernández, T. and García, C. (2011) Resistance and Resilience of the Soil Microbial Biomass to Severe Drought in Semiarid Soils: The Importance of Organic Amendments. Applied Soil Ecology, 50, 27-36.  
https://doi.org/10.1016/j.apsoil.2011.07.014</mixed-citation></ref><ref id="scirp.123314-ref18"><label>18</label><mixed-citation publication-type="other" xlink:type="simple">Laval, K., Akpa-vinceslas, M., Barray, S., Dur, J.C., Gangneux, C., Lebrun, J., Legras, M., Lepelletier, P., Plassart, P., Taibi, S. and Trinsoutrot-Gattin, I. (2009) Nouvelles avancées vers la compréhension des données biologiques. étude et Gestion Des Sols, 16, 275-285.</mixed-citation></ref><ref id="scirp.123314-ref19"><label>19</label><mixed-citation publication-type="other" xlink:type="simple">Kaisermann, A., Roguet, A., Nunan, N., Maron, P.-A., Ostle, N. and Lata, J.C. (2013) Agricultural Management Affects the Response of Soil Bacterial Community Structure and Respiration to Water-Stress. Soil Biology and Biochemistry, 66, 69-77.  
https://doi.org/10.1016/j.soilbio.2013.07.001</mixed-citation></ref><ref id="scirp.123314-ref20"><label>20</label><mixed-citation publication-type="other" xlink:type="simple">Kuan, H.L., Hallett, P.D., Griffiths, B.S., Gregory, A.S., Watts, C.W. and Whitmore, A.P. (2007) The Biological and Physical Stability and Resilience of a Selection of Scottish Soils to Stresses. European Journal of Soil Science, 58, 811-821.  
https://doi.org/10.1111/j.1365-2389.2006.00871.x</mixed-citation></ref><ref id="scirp.123314-ref21"><label>21</label><mixed-citation publication-type="other" xlink:type="simple">Wada, S. and Toyota, K. (2007) Repeated Applications of Farmyard Manure Enhance Resistance and Resilience of Soil Biological Functions against Soil Disinfection. Biology and Fertility of Soils, 43, 349-356.  
https://doi.org/10.1007/s00374-006-0116-3</mixed-citation></ref><ref id="scirp.123314-ref22"><label>22</label><mixed-citation publication-type="other" xlink:type="simple">Fotio, D., Simon, S., Njomgang, R., Nguefack, J., Nguéguim, M., Feujio, N.J.S., Téguefouet, P. and Mfopou, M.Y.C. (2009) Impacts de la gestion du sol sur la biomasse microbienne et le statut organique du sol de la zone ouest du Cameroun. Cirad-Agritrop, 1-13.</mixed-citation></ref><ref id="scirp.123314-ref23"><label>23</label><mixed-citation publication-type="other" xlink:type="simple">Tounkara, A., Clermont-dauphin, C., A, F., Ndiaye, S., Masse, D. and Cournac, L. (2020) Agriculture, Ecosystems and Environment Inorganic Fertilizer Use Efficiency of Millet Crop Increased with Organic Fertilizer Application in Rainfed Agriculture on Smallholdings in Central Senegal. Agriculture, Ecosystems and Environment, 294, Article ID: 106878. https://doi.org/10.1016/j.agee.2020.106878</mixed-citation></ref><ref id="scirp.123314-ref24"><label>24</label><mixed-citation publication-type="other" xlink:type="simple">Malou, O.P., Sebag, D., Moulin, P., Chevallier, T., Badiane-Ndour, N.Y., Thiam, A. and Chapuis-Lardy, L. (2020) The Rock-Eval&amp;#174; Signature of Soil Organic Carbon in Arenosols of the Senegalese Groundnut Basin. How Do Agricultural Practices Matter? Agriculture, Ecosystems and Environment, 301, Article ID: 107030.  
https://doi.org/10.1016/j.agee.2020.107030</mixed-citation></ref><ref id="scirp.123314-ref25"><label>25</label><mixed-citation publication-type="other" xlink:type="simple">Lericollais, A. (1988) La mort des arbres à Sob, en pays Sereer (Sénégal). Editions de l’ORSTOM, Paris, 187-197.</mixed-citation></ref><ref id="scirp.123314-ref26"><label>26</label><mixed-citation publication-type="other" xlink:type="simple">Salack, S., Muller, B., Gaye, A.T., Hourdin, F. and Cisse, N. (2012) Analyses multi-échelles des pauses pluviométriques au Niger et au Sénégal. Secheresse, 23, 3-13.</mixed-citation></ref><ref id="scirp.123314-ref27"><label>27</label><mixed-citation publication-type="other" xlink:type="simple">ANSD (2015) Situation Economique et Sociale Regionale 2013. In Service Régional de la Statistique et de la Démographie de Kaolack.</mixed-citation></ref><ref id="scirp.123314-ref28"><label>28</label><mixed-citation publication-type="other" xlink:type="simple">Yin, R., Eisenhauer, N., Auge, H., Purahong, W., Schmidt, A. and Schadler, M. (2019) Additive Effects of Experimental Climate Change and Land Use on Faunal Contribution to Litter Decomposition. Soil Biology and Biochemistry, 131, 141-148.  
https://doi.org/10.1016/j.soilbio.2019.01.009</mixed-citation></ref><ref id="scirp.123314-ref29"><label>29</label><mixed-citation publication-type="other" xlink:type="simple">Pareek, N. (2017) Climate Change Impact on Soils: Adaptation and Mitigation. MOJ Ecology &amp; Environmental Sciences, 2, 136-139.  
https://doi.org/10.15406/mojes.2017.02.00026</mixed-citation></ref><ref id="scirp.123314-ref30"><label>30</label><mixed-citation publication-type="other" xlink:type="simple">Haddaway, N.R., Hedlund, K., Jackson, L.E., Katterer, T., Lugato, E., Thomsen, I.K., Jorgensen, H.B. and Soderstrom, B. (2015) What Are the Effects of Agricultural Management on Soil Organic Carbon in Boreo-Temperate Systems? Environmental Evidence, 4, Article No. 23. https://doi.org/10.1186/s13750-015-0049-0</mixed-citation></ref><ref id="scirp.123314-ref31"><label>31</label><mixed-citation publication-type="other" xlink:type="simple">Bérard, A., Sassi, M.B., Renault, P. and Gros, R. (2012) Severe Drought-Induced Community Tolerance to Heat Wave. An Experimental Study on Soil Microbial Processes. Journal of Soils and Sediments, 12, 513-518.  
https://doi.org/10.1007/s11368-012-0469-1</mixed-citation></ref><ref id="scirp.123314-ref32"><label>32</label><mixed-citation publication-type="other" xlink:type="simple">Bradford, M.A., Davies, C.A., Frey, S.D., Maddox, T.R., Melillo, J.M., Mohan, J.E., Reynolds, J.F. and Treseder, K.K. (2008) Thermal Adaptation of Soil Microbial Respiration to Elevated Temperature. Ecology Letters, 11, 1316-1327.  
https://doi.org/10.1111/j.1461-0248.2008.01251.x</mixed-citation></ref><ref id="scirp.123314-ref33"><label>33</label><mixed-citation publication-type="other" xlink:type="simple">Steinweg, J.M., Plante, A.F., Conant, R.T., Paul, E.A. and Tanaka, D.L. (2008) Patterns of Substrate Utilization during Long-Term Incubations at Different Temperatures. Soil Biology and Biochemistry, 40, 2722-2728.  
https://doi.org/10.1016/j.soilbio.2008.07.002</mixed-citation></ref><ref id="scirp.123314-ref34"><label>34</label><mixed-citation publication-type="other" xlink:type="simple">Bárcenas-Moreno, G. and Baath, E. (2009) Bacterial and Fungal Growth in Soil Heated at Different Temperatures to Simulate a Range of Fire Intensities. Soil Biology and Biochemistry, 41, 2517-2526. https://doi.org/10.1016/j.soilbio.2009.09.010</mixed-citation></ref><ref id="scirp.123314-ref35"><label>35</label><mixed-citation publication-type="other" xlink:type="simple">IUSS Working Group WRB (2015) World Reference Base for Soil Resources 2014, Update 2015. International Soil Classification System for Naming Soils and Creating Legends for Soil Maps. World Soil Resources Reports No. 106, FAO, Rome.</mixed-citation></ref><ref id="scirp.123314-ref36"><label>36</label><mixed-citation publication-type="other" xlink:type="simple">Walkley, A. and Black, I.A. (1934) An Examination of the Degtjareff Method for Determining Soil Organic Matter, and a Proposed Modification of the Chromic Acid Titration Method. Soil Science, 63, 251-263.  
https://doi.org/10.1097/00010694-194704000-00001</mixed-citation></ref><ref id="scirp.123314-ref37"><label>37</label><mixed-citation publication-type="other" xlink:type="simple">Riah-Anglet, W., Trinsoutrot-Gattin, I., Martin-Laurent, F., Laroche-Ajzenberg, E., Norini, M.P., Latour, X., Laval, K. (2015) Soil Microbial Community Structure and Function Relationships: A Heat Stress Experiment. Applied Soil Ecology, 86, 121-130.  
https://doi.org/10.1016/j.apsoil.2014.10.001</mixed-citation></ref><ref id="scirp.123314-ref38"><label>38</label><mixed-citation publication-type="other" xlink:type="simple">Bécaert, V., Samson, R. and Deschênes, L. (2006) Effect of 2,4-D Contamination on Soil Functional Stability Evaluated Using the Relative Soil Stability Index (RSSI). Chemosphere, 64, 1713-1721. https://doi.org/10.1016/j.chemosphere.2006.01.008</mixed-citation></ref><ref id="scirp.123314-ref39"><label>39</label><mixed-citation publication-type="other" xlink:type="simple">Dussault, M., Bécaert, V., Francois, M., Sauvé, S. and Deschênes, L. (2008) Effect of Copper On Soil Functional Stability Measured by Relative Soil Stability Index (RSSI) Based on Two Enzyme Activities. Chemosphere, 72, 755-762.  
https://doi.org/10.1016/j.chemosphere.2008.03.019</mixed-citation></ref><ref id="scirp.123314-ref40"><label>40</label><mixed-citation publication-type="other" xlink:type="simple">Fierer, N., Schimel, J.P. and Holden, P.A. (2003) Influence of Drying-Rewetting Frequency on Soil Bacterial Community Structure. Microbial Ecology, 45, 63-71.  
https://doi.org/10.1007/s00248-002-1007-2</mixed-citation></ref><ref id="scirp.123314-ref41"><label>41</label><mixed-citation publication-type="other" xlink:type="simple">Jurburg, S.D., Nunes, I., Brejnrod, A., Jacquiod, S., Priemé, A., Sorensen, S.J., Van Elsas, J.D. and Salles, J.F. (2017) Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation. Frontiers Microbiology, 8, Article No. 13. https://doi.org/10.3389/fmicb.2017.01832</mixed-citation></ref><ref id="scirp.123314-ref42"><label>42</label><mixed-citation publication-type="other" xlink:type="simple">Kumar, S., Patra, A.K., Singh, D., Purakayastha, T.J., Rosin, K.G. and Kumar, M. (2013) Balanced Fertilization along with Farmyard Manures Enhances Abundance of Microbial Groups and Their Resistance and Resilience against Heat Stress in a Semi-Arid Inceptisol. Communications in Soil Science and Plant Analysis, 44, 2299-2313. https://doi.org/10.1080/00103624.2013.803562</mixed-citation></ref><ref id="scirp.123314-ref43"><label>43</label><mixed-citation publication-type="other" xlink:type="simple">Nielsen, M.N. and Winding, A. (2002) Microorganisms as Indicators of Soil Health. Technical Report No. 388, National Environmental Research Institute, Roskilde.</mixed-citation></ref><ref id="scirp.123314-ref44"><label>44</label><mixed-citation publication-type="other" xlink:type="simple">Tournier, E., Amenc, L., Pablo, A.L., Legname, E., Blanchart, E., Plassard, C., Robin, A. and Bernard, L. (2015) Modification of a Commercial DNA Extraction Kit for Safe and Rapid Recovery of DNA and RNA Simultaneously from Soil, without the Use of Harmful Solvents. MethodsX, 2, 182-191.  
https://doi.org/10.1016/j.mex.2015.03.007</mixed-citation></ref><ref id="scirp.123314-ref45"><label>45</label><mixed-citation publication-type="other" xlink:type="simple">Agren, G.I. and Wetterstedt, J.A.M. (2007) What Determines the Temperature Response of Soil Organic Matter Decomposition? Soil Biology and Biochemistry, 39, 1794-1798. https://doi.org/10.1016/j.soilbio.2007.02.007</mixed-citation></ref><ref id="scirp.123314-ref46"><label>46</label><mixed-citation publication-type="other" xlink:type="simple">Franco-Andreu, L., Gómez, I., Parrado, J., García, C., Hernández, T. and Tejada, M. (2017) Soil Biology Changes as a Consequence of Organic Amendments Subjected to a Severe Drought. Land Degradation and Development, 28, 897-905.  
https://doi.org/10.1002/ldr.2663</mixed-citation></ref><ref id="scirp.123314-ref47"><label>47</label><mixed-citation publication-type="other" xlink:type="simple">Rustad, L.E., Campbell, J.L., Marion, G.M., Norby, R.J., Mitchell, M.J., Hartley, A.E., Cornelissen, J.H.C. and Gurevitch, J. (2001) A Meta-Analysis of the Response of Soil Respiration, Net Nitrogen Mineralization, and Aboveground Plant Growth to Experimental Ecosystem Warming. Oecologia, 126, 543-562.  
https://doi.org/10.1007/s004420000544</mixed-citation></ref><ref id="scirp.123314-ref48"><label>48</label><mixed-citation publication-type="other" xlink:type="simple">Davet, P. (1995) Vie microbienne du sol et production végétale. INRA.  
https://doi.org/10.1016/S0294-3506(99)80224-5</mixed-citation></ref><ref id="scirp.123314-ref49"><label>49</label><mixed-citation publication-type="other" xlink:type="simple">Pailler, A. (2013) Les relations sol/plantes en forêts méditerranéennes: Approche bioclimatique des déterminants de la structuration fonctionnelle des communautés microbiennes des sols et de leurs réponses à un double stress hydrique et thermique en région provencale calca. Université d’Aix Marseille.</mixed-citation></ref><ref id="scirp.123314-ref50"><label>50</label><mixed-citation publication-type="other" xlink:type="simple">Griffiths, B.S., Bonkowski, M., Roy, J. and Ritz, K. (2001) Functional Stability, Substrate Utilisation and Biological Indicators of Soils Following Environmental Impacts. Applied Soil Ecology, 16, 49-61.  
https://doi.org/10.1016/S0929-1393(00)00081-0</mixed-citation></ref><ref id="scirp.123314-ref51"><label>51</label><mixed-citation publication-type="other" xlink:type="simple">Fierer, N. and Schimel, J.P. (2002) Effects of Drying-Rewetting Frequency on Soil Carbon and Nitrogen Transformations. Soil Biology and Biochemistry, 34, 777-787.  
https://doi.org/10.1016/S0038-0717(02)00007-X</mixed-citation></ref><ref id="scirp.123314-ref52"><label>52</label><mixed-citation publication-type="other" xlink:type="simple">Sun, D., Li, K., Bi, Q., Zhu, J., Zhang, Q., Jin, C., Lu, L. and Lin, X. (2017) Effects of Organic Amendment on Soil Aggregation and Microbial Community Composition during Drying-Rewetting Alternation. Science of the Total Environment, 574, 735-743. https://doi.org/10.1016/j.scitotenv.2016.09.112</mixed-citation></ref><ref id="scirp.123314-ref53"><label>53</label><mixed-citation publication-type="book" xlink:type="simple">Aislabie, J. and Deslippe, J.R. (2013) Soil Microbes and Their Contribution to Soil Services. In: Dymond, J.R., Ed., Ecosystem Services in New Zealand: Conditions and Trends, Manaaki Whenua Press, Lincoln, 143-161.  
https://www.landcareresearch.co.nz/assets/Publications/Ecosystem-services-in-New-Zealand/1_12_Aislabie.pdf</mixed-citation></ref><ref id="scirp.123314-ref54"><label>54</label><mixed-citation publication-type="other" xlink:type="simple">Fierer, N., Breitbart, M., Nulton, J., Salamon, P., Lozupone, C., Jones, R., Robeson, M., Edwards, R.A., Felts, B., Rayhawk, S., Knight, R., Rohwer, F. and Jackson, R.B. (2007) Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil. American Society for Microbiology, 73, 7059-7066. https://doi.org/10.1128/AEM.00358-07</mixed-citation></ref><ref id="scirp.123314-ref55"><label>55</label><mixed-citation publication-type="other" xlink:type="simple">Balajee, S.A., Gribskov, J.L., Hanley, E., Nickle, D. and Marr, K.A. (2005) Aspergillus lentulus sp. nov., a New Sibling Species of A. fumigatus. Eukaryotic Cell, 4, 625-632. https://doi.org/10.1128/EC.4.3.625-632.2005</mixed-citation></ref><ref id="scirp.123314-ref56"><label>56</label><mixed-citation publication-type="other" xlink:type="simple">Bossler, A.D., Richter, S.S., Chavez, A.J., Vogelgesang, S.A., Sutton, D.A., Grooters, A.M., Rinaldi, M.G., De Hoog, G.S. and Pfaller, M.A. (2003) Exophiala oligosperma Causing Olecranon Bursitis. Journal of Clinical Microbiology, 41, 4779-4782.  
https://doi.org/10.1128/JCM.41.10.4779-4782.2003</mixed-citation></ref><ref id="scirp.123314-ref57"><label>57</label><mixed-citation publication-type="other" xlink:type="simple">Fierer, N. (2017) Embracing the Unknown: Disentangling the Complexities of the Soil Microbiome. Nature Reviews Microbiology, 15, 579-590.  
https://doi.org/10.1038/nrmicro.2017.87</mixed-citation></ref><ref id="scirp.123314-ref58"><label>58</label><mixed-citation publication-type="other" xlink:type="simple">Ali, S., Ganai, B.A., Kamili, A.N., Bhat, A.A., Mir, Z.A., Bhat, J.A., Tyagi, A., Islam, S.T., Mushtaq, M., Yadav, P., Rawat, S. and Grover, A. (2018) Pathogenesis-Related Proteins and Peptides as Promising Tools for Engineering Plants with Multiple Stress Tolerance. Microbiological Research, 212-213, 29-37.  
https://doi.org/10.1016/j.micres.2018.04.008</mixed-citation></ref><ref id="scirp.123314-ref59"><label>59</label><mixed-citation publication-type="other" xlink:type="simple">Razanamalala, K., Razafimbelo, T., Maron, P.A., Ranjard, L., Chemidlin, N., Lelièvre, M., Dequiedt, S., Ramaroson, V.H., Marsden, C., Becquer, T., Trap, J., Blanchart, E. and Bernard, L. (2018) Soil Microbial Diversity Drives the Priming Effect along Climate Gradients: A Case Study in Madagascar. International Society for Microbial Ecology, 12, 451-462. https://doi.org/10.1038/ismej.2017.178</mixed-citation></ref><ref id="scirp.123314-ref60"><label>60</label><mixed-citation publication-type="other" xlink:type="simple">Goldfarb, K.C., Karaoz, U., Hanson, C.A., Santee, C.A., Bradford, M.A., Treseder, K.K., Wallenstein, M.D. and Brodie, E.L. (2011) Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance. Frontiers in Microbiology, 2, 94. https://doi.org/10.3389/fmicb.2011.00094</mixed-citation></ref><ref id="scirp.123314-ref61"><label>61</label><mixed-citation publication-type="other" xlink:type="simple">Demharter, W., Hensel, R., Smida, J. and Stackebrandt, E. (1989) Sphaerobacter thermophilus gen. nov., sp. nov. A Deeply Rooting Member of the Actinomycetes Subdivision Isolated from Thermophilically Treated Sewage Sludge. Systematic and Applied Microbiology, 11, 261-266. https://doi.org/10.1016/S0723-2020(89)80023-2</mixed-citation></ref><ref id="scirp.123314-ref62"><label>62</label><mixed-citation publication-type="other" xlink:type="simple">Preece, C., Verbruggen, E., Liu, L., Weedon, J.T. and Penuelas, J. (2019) Effects of Past and Current Drought on the Composition and Diversity of Soil Microbial Communities. Soil Biology and Biochemistry, 131, 28-39.  
https://doi.org/10.1016/j.soilbio.2018.12.022</mixed-citation></ref><ref id="scirp.123314-ref63"><label>63</label><mixed-citation publication-type="other" xlink:type="simple">Shin, N., Whon, T.W. and Bae, J. (2015) Proteobacteria: Microbial Signature of Dysbiosis in Gut Microbiota. Trends in Biotechnology, 33, 496-503.  
https://doi.org/10.1016/j.tibtech.2015.06.011</mixed-citation></ref><ref id="scirp.123314-ref64"><label>64</label><mixed-citation publication-type="other" xlink:type="simple">Schimel, J., Balser, T.C. and Wallenstein, M. (2007) Microbial Stress-Response Physiology and Its Implications for Ecosystem Function. Ecological Society of America, 88, 1386-1394. https://doi.org/10.1890/06-0219</mixed-citation></ref><ref id="scirp.123314-ref65"><label>65</label><mixed-citation publication-type="other" xlink:type="simple">Billi, D. and Potts, M. (2002) Life and Death of Dried Prokaryotes. Research in Microbiology, 153, 7-12. https://doi.org/10.1016/S0923-2508(01)01279-7</mixed-citation></ref><ref id="scirp.123314-ref66"><label>66</label><mixed-citation publication-type="other" xlink:type="simple">Lebouvier, M., Chapuis, J.L., Gloaguen, J.C. and Frenot, Y. (2002) Résilience des communautés insulaires subantarctiques: Facteurs influencant la vitesse de restauration écologique après éradication de mammifères introduits. Revue d’Ecologie (La Terre et La Vie), 57, 189-198. https://doi.org/10.3406/revec.2002.6219</mixed-citation></ref><ref id="scirp.123314-ref67"><label>67</label><mixed-citation publication-type="other" xlink:type="simple">Allison, S.D. and Martiny, J.B.H. (2008) Resistance, Resilience, and Redundancy in Microbial Communities. PNAS, 105, 11512-11519.  
https://doi.org/10.1073/pnas.0801925105</mixed-citation></ref><ref id="scirp.123314-ref68"><label>68</label><mixed-citation publication-type="other" xlink:type="simple">Scheldeman, P., Herman, L., Foster, S. and Heyndrickx, M. (2006) Bacillus Sporothermodurans and Other Highly Heat-Resistant Spore Formers in Milk. Journal of Applied Microbiology, 101, 542-555.  
https://doi.org/10.1111/j.1365-2672.2006.02964.x</mixed-citation></ref><ref id="scirp.123314-ref69"><label>69</label><mixed-citation publication-type="other" xlink:type="simple">Kampfer, P., Rosselló-Mora, R., Falsen, E., Busse, H.J. and Tindall, B.J. (2006) Cohnella thermotolerans gen. nov., sp. nov. and Classification of “Paenibacillus hongkongensis” as Cohnella hongkongensis sp. nov. International Journal of Systematic and Evolutionary Microbiology, 56, 781-786. https://doi.org/10.1099/ijs.0.63985-0</mixed-citation></ref><ref id="scirp.123314-ref70"><label>70</label><mixed-citation publication-type="other" xlink:type="simple">Berthou, S., Rowell, D.P., Kendon, E.J., Rachel, R., Julia, S. and Catherine, C. (2018) Improved Climatological Precipitation Characteristics over West Africa at Convection-Permitting Scale. Climate Dynamics Manuscript No. 1-22.</mixed-citation></ref><ref id="scirp.123314-ref71"><label>71</label><mixed-citation publication-type="other" xlink:type="simple">Stratton, R.A., Senior, C.A., Vosper, S.B., Folwell, S.S., Boutle, I.A., Earnshaw, P.D., Kendon, E., Lock, A.P., Malcolm, A., Manners, J., Morcrette, C.J., Short, C., Stirling, A.J., Taylor, C.M., Tucker, S., Webster, S. and Wilkinson, J.M. (2018) A Pan-African Convection-Permitting Regional Climate Simulation with the Met Office Unified Model: CP4-Africa. Journal of Climate, 31, 3485-3508.  
https://doi.org/10.1175/JCLI-D-17-0503.1</mixed-citation></ref></ref-list></back></article>