<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="3.0" xml:lang="en" article-type="research article"><front><journal-meta><journal-id journal-id-type="publisher-id">OJGen</journal-id><journal-title-group><journal-title>Open Journal of Genetics</journal-title></journal-title-group><issn pub-type="epub">2162-4453</issn><publisher><publisher-name>Scientific Research Publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.4236/ojgen.2022.124006</article-id><article-id pub-id-type="publisher-id">OJGen-121960</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biomedical&amp;Life Sciences</subject></subj-group></article-categories><title-group><article-title>
 
 
  Heritability and Genetic Correlation of Niamey’s Local Chicken Growth (Niger)
 
</article-title></title-group><contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Adamou</surname><given-names>Guisso Taffa</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Salissou</surname><given-names>Issa</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Chaibou</surname><given-names>Mahamadou</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Nassim</surname><given-names>Moula</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Johann</surname><given-names>Detilleux</given-names></name><xref ref-type="aff" rid="aff4"><sup>4</sup></xref></contrib></contrib-group><aff id="aff1"><addr-line>Department of Animal Production, Agronomy Faculty, Abdou Moumouni University of Niamey, Niamey, Niger</addr-line></aff><aff id="aff3"><addr-line>GIGA, Animal Facilities, University of Liege, Liege, Belgium</addr-line></aff><aff id="aff4"><addr-line>Department of Equine Clinical Sciences, Faculty of Veterinary Medicine, University of Liege, Liege, Belgium</addr-line></aff><aff id="aff2"><addr-line>Department of Animal Production, National Institute for Agronomic Research of Niger, Niamey, Niger</addr-line></aff><pub-date pub-type="epub"><day>07</day><month>12</month><year>2022</year></pub-date><volume>12</volume><issue>04</issue><fpage>57</fpage><lpage>68</lpage><history><date date-type="received"><day>29,</day>	<month>November</month>	<year>2022</year></date><date date-type="rev-recd"><day>24,</day>	<month>December</month>	<year>2022</year>	</date><date date-type="accepted"><day>27,</day>	<month>December</month>	<year>2022</year></date></history><permissions><copyright-statement>&#169; Copyright  2014 by authors and Scientific Research Publishing Inc. </copyright-statement><copyright-year>2014</copyright-year><license><license-p>This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/</license-p></license></permissions><abstract><p>
 
 
  The exploitation of industrial strains of chickens in the Sahelian climate of Niger is characterized by a decline in performance and significant costs associated with their maintenance. In contrast, local chickens are well adapted to these environmental conditions but with poor production performance. 
  Genetic selection of these local chickens could improve their productivity. 
  The
   
  first step is to determine if the genetic parameters of their growth are high enough to ensure a successful selection strategy. To do so, weekly weights of 
  69 parents and 119 offspring were followed for 20 weeks. The heritabilit
  y and genetic correlations of these weights were estimated through the Bayesian 
  approach using the MCMCglmm package on R software. At hatching,
   weights ranged from 23 to 25 g. At 20 weeks, these weights ranged from 1031 to 1052 g for females and 1308 to 1445 g for males. Heritabilities for hatch weights at 4,
   
  8,
   
  12,
   
  16, and 20 weeks of age were estimated to be 0.56, 0.31, 0.52, 0.53, 0.52 and 0.48 respectively and all genetic correlations were positive. In particular, weight at 8 weeks of age showed both good heritability (h<sup>2</sup> = 0.52) and strong, positive genetic correlations with weights at older ages. These results indicate that genetic selection to improve weight at 8 weeks of age would be a good strategy to improve the overall growth performance of these chickens.
 
</p></abstract><kwd-group><kwd>Bayesian</kwd><kwd> Genetic Correlations</kwd><kwd> Heritability</kwd><kwd> Local Chicken</kwd><kwd> MCMCglmm</kwd><kwd> Weight Gain</kwd><kwd> Niger</kwd></kwd-group></article-meta></front><body><sec id="s1"><title>1. Introduction</title><p>Local chicken makes up 57% of Niger’s poultry population [<xref ref-type="bibr" rid="scirp.121960-ref1">1</xref>]. Due to its availability and accessibility, it is one of the main sources of animal protein. It can be found in almost every rural Nigerien household and its meat is less expensive than that of large livestock [<xref ref-type="bibr" rid="scirp.121960-ref2">2</xref>]. However, this local chicken is not very productive [<xref ref-type="bibr" rid="scirp.121960-ref3">3</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref4">4</xref>] and its performance needs to be improved in order to combat poverty and food insecurity.</p><p>Industrial strains are potentially more productive, but the Sahelian climate of Niger, characterized by high temperatures and low humidity, can lead to a decrease in performance and increased production costs [<xref ref-type="bibr" rid="scirp.121960-ref5">5</xref>]. In these industrial strains, heat stress can cause a decrease in food intake [<xref ref-type="bibr" rid="scirp.121960-ref6">6</xref>] and an increase in the allocation of food energy to thermoregulation rather than growth [<xref ref-type="bibr" rid="scirp.121960-ref7">7</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref8">8</xref>]. In addition, behavioral disturbances such as cannibalism and heat stroke can lead to high mortality [<xref ref-type="bibr" rid="scirp.121960-ref5">5</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref8">8</xref>]. On the other hand, local chickens, despite their lower productivity levels, are well adapted to local climatic conditions [<xref ref-type="bibr" rid="scirp.121960-ref4">4</xref>]. One way to improve their performance would be through the implementation of genetic improvement systems [<xref ref-type="bibr" rid="scirp.121960-ref9">9</xref>].</p><p>The improvement of performance through selection requires first of all the knowledge of certain genetic parameters such as heritability and genetic correlations between traits to be improved [<xref ref-type="bibr" rid="scirp.121960-ref10">10</xref>]. Indeed, the knowledge and the consideration of these parameters allow to estimate the expected genetic gain and to better define the strategies to be implemented [<xref ref-type="bibr" rid="scirp.121960-ref11">11</xref>].</p><p>Two statistical approaches (Frequentist and Bayesian) can be used for the estimation of genetic parameters. For the frequentist approach, the probabilities represent the frequency of events after a large number of repetitions of an observation or experiment, whereas the Bayesian approach interprets these probabilities as our uncertainty about the value of a quantity [<xref ref-type="bibr" rid="scirp.121960-ref12">12</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref13">13</xref>]. Therefore, contrary to the Bayesian approach, the frequentist approach requires a high number of observations to obtain a reliable estimate of the parameters. Indeed, in a classical (frequentist) approach, a reliable estimation of heritability or genetic correlations would require a sample size of at least 1000 subjects [<xref ref-type="bibr" rid="scirp.121960-ref14">14</xref>]. On the other hand, as Robert (2006) [<xref ref-type="bibr" rid="scirp.121960-ref15">15</xref>] states “...an a priori model is certainly important for small samples, but it is also less and less important as the sample size increases...”</p><p>However, the use of the Bayesian approach imposes the choice of an a priori distribution whose adequacy with the data conditions the reliability of the final estimates [<xref ref-type="bibr" rid="scirp.121960-ref16">16</xref>]. Thus, if the data are normally distributed, it is advisable to use an inverse Wishart distribution because it is the conjugate distribution for the covariance matrix of a multivariate normal distribution [<xref ref-type="bibr" rid="scirp.121960-ref17">17</xref>].</p><p>The choice of the parameters of this prior distribution is also important. Using the MCMC algorithm, it is recommended to test several versions of the prior distribution by modulating its variance (nu). And the a priori version that should be retained for the final execution of the model will be the one for which the sample size of the a posteriori distribution will be the highest and the autocorrelations lower and whose deviance information criterion (DIC) is the largest [<xref ref-type="bibr" rid="scirp.121960-ref18">18</xref>].</p><p>The objective of this study is to estimate, using the Bayesian method, the genetic correlations between the weights of chickens at birth (P0), 4 weeks (P4), 8 weeks (P8), 12 weeks (P12), 16 weeks (P16) and 20 weeks (P20) and the heritabilities of these weights.</p></sec><sec id="s2"><title>2. Materials and Methods</title><sec id="s2_1"><title>2.1. Animals</title><p>Eggs from local salmon-gold hens were incubated to produce 14 roosters and 55 hens. Each rooster was raised with 3 - 4 hens in separate cages (14 breeding groups). The eggs produced by each group were incubated separately. The 14 offspring groups consisted of 119 chickens of which 58 were females and 61 were males. <xref ref-type="table" rid="table1"><xref ref-type="table" rid="table">Table </xref>1</xref> gives the distribution of the number of offspring per breeding group.</p></sec><sec id="s2_2"><title>2.2. Data Collection</title><p>The data collected were mainly weights at hatch (P0), 4 weeks (P4), 8 weeks (P8), 12 weeks (P12), 16 weeks (P16) and 20 weeks (P20). Measurements were made using a digital balance with an accuracy of 1 g.</p></sec><sec id="s2_3"><title>2.3. Data Analysis</title><p>All statistical analyses were performed with the RStudio interface of the R software [<xref ref-type="bibr" rid="scirp.121960-ref19">19</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref20">20</xref>]. A multivariate animal model was used to estimate genetic correlations and heritabilities using the MCMCglmm package [<xref ref-type="bibr" rid="scirp.121960-ref21">21</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref22">22</xref>] with sex (male or female) and generation (parent or offspring) as fixed effects. The weights were standardized (centered-reduced values around their means) in order to minimize variance differences between weights at different ages and to facilitate the convergence of the chains of the MCMC algorithm [<xref ref-type="bibr" rid="scirp.121960-ref23">23</xref>].</p></sec><sec id="s2_4"><title>2.4. Model Running</title><p>Details of the model used are given in Annex A1. Three variants of the Inverse-Wishart prior distribution were used to run the model (Appendix). The purpose was to assess the effect of varying priors on the model results. The variant selected to finally run the model was the one with the highest sample sizes of the posterior distributions and the lowest autocorrelations and with the largest DIC (deviance information criterion). This is the inverse-Wishart prior: V = diag(6), nu = 6 (modified inverse-Wishart).</p><table-wrap id="table1" ><label><xref ref-type="table" rid="table1"><xref ref-type="table" rid="table">Table </xref>1</xref></label><caption><title> Distribution of the number of offspring by breeding groups</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Reproduction group</th><th align="center" valign="middle" >1</th><th align="center" valign="middle" >2</th><th align="center" valign="middle" >3</th><th align="center" valign="middle" >4</th><th align="center" valign="middle" >5</th><th align="center" valign="middle" >6</th><th align="center" valign="middle" >7</th><th align="center" valign="middle" >8</th><th align="center" valign="middle" >9</th><th align="center" valign="middle" >10</th><th align="center" valign="middle" >11</th><th align="center" valign="middle" >12</th><th align="center" valign="middle" >13</th><th align="center" valign="middle" >14</th></tr></thead><tr><td align="center" valign="middle" >Number of offspring</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >7</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >8</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >10</td><td align="center" valign="middle" >6</td><td align="center" valign="middle" >10</td><td align="center" valign="middle" >9</td><td align="center" valign="middle" >11</td><td align="center" valign="middle" >8</td></tr></tbody></table></table-wrap><p>For all the variants of priors, the MCMC algorithm has been run for a total number of 1,000,000 iterations, the registration of the samples of the a posteriori distribution has been done at each 100 iterations. The beginning of the recordings was from 3000 iterations in order to minimize the autocorrelations between samples [<xref ref-type="bibr" rid="scirp.121960-ref21">21</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref23">23</xref>].</p></sec></sec><sec id="s3"><title>3. Results</title><sec id="s3_1"><title>3.1. Weight Evolution</title><p>The evolution of the weights of founders (F0) and offspring (F1) is recorded in <xref ref-type="table" rid="table2"><xref ref-type="table" rid="table">Table </xref>2</xref>. At hatching, the weights of the two groups varied from 23 to 25 g with little dispersion around the mean as shown by the standard error values.</p></sec><sec id="s3_2"><title>3.2. Heritability</title><p><xref ref-type="table" rid="table3"><xref ref-type="table" rid="table">Table </xref>3</xref> shows the variance components as well as the heritability of weights at different ages. The estimated heritability for hatching weight and 8, 12, 16, and 20 weeks of age were high. Only the heritability of weight at 4 weeks of age was moderate.</p><table-wrap id="table2" ><label><xref ref-type="table" rid="table2"><xref ref-type="table" rid="table">Table </xref>2</xref></label><caption><title> Means (m) &#177; standard error (se) in grams of chicken weights according to generation (founders and offspring), age (0, 4, 8, 12, 16 and 20 weeks) and sex</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Group</th><th align="center" valign="middle" >Sex</th><th align="center" valign="middle" >P0 (m &#177; se)</th><th align="center" valign="middle" >P4 (m &#177; se)</th><th align="center" valign="middle" >P8 (m &#177; se)</th><th align="center" valign="middle" >P12 (m &#177; se)</th><th align="center" valign="middle" >P16 (m &#177; se)</th><th align="center" valign="middle" >P20 (m &#177; se)</th></tr></thead><tr><td align="center" valign="middle" >Founder</td><td align="center" valign="middle" >Females (N = 55)</td><td align="center" valign="middle" >25.01 &#177; 0.49</td><td align="center" valign="middle" >133.03 &#177; 3.59</td><td align="center" valign="middle" >342.71 &#177; 6.83</td><td align="center" valign="middle" >628.85 &#177; 9.52</td><td align="center" valign="middle" >839.69 &#177; 12.1</td><td align="center" valign="middle" >1052 &#177; 14.04</td></tr><tr><td align="center" valign="middle" >Founder</td><td align="center" valign="middle" >Males (N = 14)</td><td align="center" valign="middle" >24.64 &#177; 0.82</td><td align="center" valign="middle" >152.86 &#177; 7.96</td><td align="center" valign="middle" >434.71 &#177; 12.1</td><td align="center" valign="middle" >787.71 &#177; 26.41</td><td align="center" valign="middle" >1103.57 &#177; 29.45</td><td align="center" valign="middle" >1445.71 &#177; 45.81</td></tr><tr><td align="center" valign="middle" >offspring</td><td align="center" valign="middle" >Females (N = 58)</td><td align="center" valign="middle" >23.17 &#177; 0.39</td><td align="center" valign="middle" >195.41 &#177; 3.63</td><td align="center" valign="middle" >406.02 &#177; 8.77</td><td align="center" valign="middle" >668.79 &#177; 14.70</td><td align="center" valign="middle" >844.66 &#177; 15.59</td><td align="center" valign="middle" >1031.38 &#177; 18.55</td></tr><tr><td align="center" valign="middle" >offspring</td><td align="center" valign="middle" >Males (N = 61)</td><td align="center" valign="middle" >23.85 &#177; 0.40</td><td align="center" valign="middle" >213.54 &#177; 4.52</td><td align="center" valign="middle" >475.74 &#177; 11.62</td><td align="center" valign="middle" >780.33 &#177; 19.33</td><td align="center" valign="middle" >1079.26 &#177; 26.55</td><td align="center" valign="middle" >1308.85 &#177; 26.51</td></tr></tbody></table></table-wrap><table-wrap id="table3" ><label><xref ref-type="table" rid="table3"><xref ref-type="table" rid="table">Table </xref>3</xref></label><caption><title> Estimates and credibility intervals [CI] of additive variance components; phenotypic variances and weight heritabilities at different ages</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Weight</th><th align="center" valign="middle" >Variances additives [CI]</th><th align="center" valign="middle" >Variances ph&#233;notypiques [CI]</th><th align="center" valign="middle" >H&#233;ritabilit&#233; (h<sup>2</sup>) [CI]</th></tr></thead><tr><td align="center" valign="middle" >At hatching</td><td align="center" valign="middle" >0.60 [0.28 - 0.90]</td><td align="center" valign="middle" >1.05 [0.80 - 1.34]</td><td align="center" valign="middle" >0.56 [0.35 - 0.78]</td></tr><tr><td align="center" valign="middle" >4 weeks</td><td align="center" valign="middle" >0.38 [0.14 - 0.66]</td><td align="center" valign="middle" >1.24 [0.90 - 1.59]</td><td align="center" valign="middle" >0.31 [0.12 - 0.51]</td></tr><tr><td align="center" valign="middle" >8 weeks</td><td align="center" valign="middle" >0.51 [0.20 - 0.90]</td><td align="center" valign="middle" >0.95 [0.72 - 1.21]</td><td align="center" valign="middle" >0.52 [0.25 - 0.81]</td></tr><tr><td align="center" valign="middle" >12 weeks</td><td align="center" valign="middle" >0.50 [0.18 - 0.85]</td><td align="center" valign="middle" >0.94 [0.71 - 1.19]</td><td align="center" valign="middle" >0.53 [0.25 - 0.81]</td></tr><tr><td align="center" valign="middle" >16 weeks</td><td align="center" valign="middle" >0.41 [0.15 - 0.70]</td><td align="center" valign="middle" >0.78 [0.59 - 1.01]</td><td align="center" valign="middle" >0.52 [0.24 - 0.80]</td></tr><tr><td align="center" valign="middle" >20 weeks</td><td align="center" valign="middle" >0.36 [0.14 - 0.61]</td><td align="center" valign="middle" >0.74 [0.54 - 0.96]</td><td align="center" valign="middle" >0.48 [0.23 - 0.74]</td></tr></tbody></table></table-wrap></sec><sec id="s3_3"><title>3.3. Genetic Correlations</title><p>The estimated genetic correlations between the different weight measures are recorded in <xref ref-type="table" rid="table4"><xref ref-type="table" rid="table">Table </xref>4</xref>. All genetic correlations were positive. The strongest correlations were observed between weights at ages ranging from 8 to 12 weeks. Hatching weight (P0) was weakly correlated with all other weights. With the exception of hatching weight, all other weights had strong correlations with 8-week weight.</p></sec></sec><sec id="s4"><title>4. Discussion</title><sec id="s4_1"><title>4.1. Heritability</title><p>Similar heritability values to the present study have been reported for Thai Betong (KU Line) local chicken, Egyptian local chicken (Matrouh, Mandarah, Inshas and Monzatah Silver) and Iraqi local chicken [<xref ref-type="bibr" rid="scirp.121960-ref24">24</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref25">25</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref26">26</xref>]. However, lower values, ranging from 0.15 to 0.25 have also been reported for Egyptian Horro chicken and in Nigeria [<xref ref-type="bibr" rid="scirp.121960-ref27">27</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref28">28</xref>]. In general, heritability values for poultry growth traits are moderate to very high [<xref ref-type="bibr" rid="scirp.121960-ref14">14</xref>]. This may, in part, explain the significant improvements in growth performance achieved in this species through genetic selection [<xref ref-type="bibr" rid="scirp.121960-ref11">11</xref>]. Other factors that have contributed to and accelerated this genetic gain are the small size of the animals, allowing thousands of animals to be raised in the same environment, and especially their prolificity coupled with a short reproductive cycle [<xref ref-type="bibr" rid="scirp.121960-ref29">29</xref>]. But all this would not have been possible without the consequent contribution of the fields of health and nutrition [<xref ref-type="bibr" rid="scirp.121960-ref30">30</xref>]. Although a high heritability value predicts a rapid response to selection, this value refers only to the group of animals on which it has been estimated in relation to their environment [<xref ref-type="bibr" rid="scirp.121960-ref31">31</xref>]. Thus, although the heritabilities estimated in this study indicate that nearly 50% of the observed variability is genetic in origin, the improvement of these traits by selection will also be conditioned by environmental factors.</p><table-wrap id="table4" ><label><xref ref-type="table" rid="table4"><xref ref-type="table" rid="table">Table </xref>4</xref></label><caption><title> Estimates and credibility intervals for estimated genetic correlations between weights at hatching (P0), 4 weeks (P4), 8 weeks (P8), 12 weeks (P12), 16 weeks (P16) and 20 weeks (P20)</title></caption><table><tbody><thead><tr><th align="center" valign="middle" ></th><th align="center" valign="middle" >P0</th><th align="center" valign="middle" >P4</th><th align="center" valign="middle" >P8</th><th align="center" valign="middle" >P12</th><th align="center" valign="middle" >P16</th><th align="center" valign="middle" >P20</th></tr></thead><tr><td align="center" valign="middle" >P0</td><td align="center" valign="middle" ></td><td align="center" valign="middle" >0.36 [−0.05, 0.74]</td><td align="center" valign="middle" >0.33 [−0.10, 0.72]</td><td align="center" valign="middle" >0.32 [−0.09, 0.73]</td><td align="center" valign="middle" >0.32 [−0.10, 0.74]</td><td align="center" valign="middle" >0.32 [−0.09, 0.74]</td></tr><tr><td align="center" valign="middle" >P4</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" >0.56 [0.22, 0.86]</td><td align="center" valign="middle" >0.47 [0.07, 0.81]</td><td align="center" valign="middle" >0.45 [0.03, 0.79]</td><td align="center" valign="middle" >0.43 [0.07, 0.78]</td></tr><tr><td align="center" valign="middle" >P8</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" >0.81 [0.64, 0.94]</td><td align="center" valign="middle" >0.76 [0.55, 0.92]</td><td align="center" valign="middle" >0.76 [0.45, 0.90]</td></tr><tr><td align="center" valign="middle" >P12</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" >0.77 [0.57, 0.93]</td><td align="center" valign="middle" >0.73 [0.50, 0.91]</td></tr><tr><td align="center" valign="middle" >P16</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" >0.84 [0.70, 0.94]</td></tr><tr><td align="center" valign="middle" >P20</td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td><td align="center" valign="middle" ></td></tr></tbody></table></table-wrap></sec><sec id="s4_2"><title>4.2. Genetic Correlations</title><p>The estimates of genetic correlations in this study are consistent with those reported by other authors on the same parameter in local chickens [<xref ref-type="bibr" rid="scirp.121960-ref25">25</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref26">26</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref27">27</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref32">32</xref>]. For all these studies, and as with our results, only hatch weight is weakly correlated with the other weights. The strong genetic correlations between 8-week weight and 12-, 16-, and 20-week weights indicate that a genetic improvement in 8-week weight would also result in improved weights at 12, 16, and 20 weeks. It can also be speculated that egg weight at laying age (20 weeks) could be improved by selecting larger females as Beaumont et al., (2011) [<xref ref-type="bibr" rid="scirp.121960-ref33">33</xref>] state that egg weight at laying age is positively correlated with pullet weight at laying age. Also, a selection from 8 weeks of age would reduce the production costs due to the management of the farm (feeding, health) because only the selected birds will be raised beyond 8 weeks of age.</p></sec><sec id="s4_3"><title>4.3. Limitations and Perspectives</title><p>Knowledge of the genetic parameters of these chickens is only part of the solution to improve their productivity. The feeding and health aspects are also very important factors in obtaining these results. Indeed, it was necessary to fix all these environmental factors to ensure the reliability of the estimates of these genetic parameters. Considering that these animals have feed conversion ratios ranging from 3.38 to 3.45 [<xref ref-type="bibr" rid="scirp.121960-ref9">9</xref>], the investments attributable to quality feeding and health monitoring can be costly and economically inefficient. Especially since the availability and accessibility of food is a real problem in the West African sub-region and in Niger in particular [<xref ref-type="bibr" rid="scirp.121960-ref34">34</xref>] [<xref ref-type="bibr" rid="scirp.121960-ref35">35</xref>]. Consequently, improving the productivity of this local poultry should be based primarily on reducing feed costs. This can be done by first breeding them with a standard strain with better feed efficiency and then continuing the selection process while using non-conventional feed resources to avoid competition with human populations.</p></sec></sec><sec id="s5"><title>5. Conclusion</title><p>Our results indicate that local chickens in Niger can respond effectively to genetic selection for live weight improvement. But also, it is possible to reduce production costs by opting for a selection at 8 weeks. Indeed, the reduction of the number of animals through the exclusion of those that do not meet the selection criteria at this age would reduce the resources related to the management of the farm beyond this age. However, it should be noted that these estimated values only refer to this group of birds and that these parameters may change over time and according to the environment.</p></sec><sec id="s6"><title>Acknowledgements</title><p>Authors thank Dr. Ahmet Moustapha, veterinarian, and temporary worker at the Faculty of Agronomy of the University of Niamey for his help in health monitoring.</p></sec><sec id="s7"><title>Conflicts of Interest</title><p>The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of the data; in the writing of the manuscript; or in the decision to publish the results.</p></sec><sec id="s8"><title>Funding</title><p>This study is funded by the Belgian Academy of Research and Higher Education (ARES) as part of the research and development project: Improvement of the poultry sector in the Niamey region (AFARNi).</p></sec><sec id="s9"><title>Author’s Contributions</title><p>Conceptualization: A.G.T.; data curation: A.G.T.; funding acquisition: J.D. and C.M.; methodology: A.G.T., J.D. and S.I.; supervision: N.M., J.D. and S.I.; writing—original draft: A.G.T.; review and editing: N.M., S.I., J.D. and C.M.</p><p>All authors have read and agreed to the published version of the manuscript.</p></sec><sec id="s10"><title>Cite this paper</title><p>Taffa, A.G., Issa, S., Mahamadou, C., Moula, N. and Detilleux, J. (2022) Heritability and Genetic Correlation of Niamey’s Local Chicken Growth (Niger). Open Journal of Genetics, 12, 57-68. https://doi.org/10.4236/ojgen.2022.124006</p></sec><sec id="s11"><title>Appendixes</title>A.1. Multivariate Model Details<p>Equation (1) represents the multivariate model used to estimate the genetic correlations and heritability. Equations (2) and (3) represent respectively the Expectation and the Variance of the model.</p><p>[ y 1 y 2 y 3 y 4 y 5 y 6 ] = [ X 1 0 0 0 0 0     0 X 2 0 0 0 0     0 0 X 3 0 0 0     0 0 0 X 4 0 0     0 0 0 0 X 5 0     0 0 0 0 0 X 6 ] [ b 1 b 2 b 3 b 4 b 5 b 6 ] + [ Z 1 0 0 0 0 0     0 Z 2 0 0 0 0     0 0 Z 3 0 0 0     0 0 0 Z 4 0 0     0 0 0 0 Z 5 0     0 0 0 0 0 Z 6 ] [ a 1 a 2 a 3 a 4 a 5 a 6 ] + [ e 1 e 2 e 3 e 4 e 5 e 6 ] (1)</p><p>where</p><p>y<sub>1</sub> to y<sub>6</sub> are the phenotypic values of the 6 traits (P0; P4; P8; P12; P16 and P20);</p><p>X<sub>1</sub> to X<sub>6</sub> are the impact matrices of the fixed effects of the 6 traits;</p><p>Z<sub>1</sub> to Z<sub>6</sub> are the impact matrices of the random effects of the 6 characters;</p><p>b1 to b<sub>6</sub> are the vectors of the fixed effects of the 6 characters;</p><p>a<sub>1</sub> to a<sub>6</sub> are the vectors of additive genetic effects of the 6 traits [a ~ N(0, A σ a 2 )];</p><p>e<sub>1</sub> to e<sub>6</sub> are the vectors of the residual effects of the 6 traits [e ~ N(0, I σ e 2 ].</p><p>The expectation and variance of the model are obtained as follows:</p><p>E ( [ y 1 y 2 y 3 y 4 y 5 y 6 ] ) = [ X 1 0 0 0 0 0     0 X 2 0 0 0 0     0 0 X 3 0 0 0     0 0 0 X 4 0 0     0 0 0 0 X 5 0     0 0 0 0 0 X 6 ] [ b 1 b 2 b 3 b 4 b 5 b 6 ] (2)</p><p>and</p><disp-formula id="scirp.121960-formula4"><label>(3)</label><graphic position="anchor" xlink:href="//html.scirp.org/file/2-1370413x11.png?20221226165418401"  xlink:type="simple"/></disp-formula><p>where</p><p>A: corresponds to the matrix of additive genetic relationships resulting from the pedigree;</p><p>A σ a 11 2 to A σ a 66 2 are additive genetic (co)variances;</p><p>I σ e 21 2 to I σ e 66 2 are the residual (co)variances and I is the identity matrix.</p>A.2. Tested Priors<p>The priors that were tested are the following:</p><p>prior1 (Invers-Wishart): V = diag(6); nu = 1.002</p><p>prior2 (Invers-Wishart modified 1): V = diag(6); nu = 1.02</p><p>Prior3 (Invers-Wishart modified 2): V = diag(6); nu = 6</p>A.3. Model Convergence Diagnosis<p>In the case of the multivariate model, the “autocorr.diag” and “effectiveSize” functions provide the autocorrelations and sample sizes by combining the variables two by two. As a result, the values reported in <xref ref-type="table" rid="table">Table </xref>A1 6 are the highest autocorrelations and smallest sample sizes recorded between any two of the variables. Prior 3 has the lowest autocorrelations and effectiveSize similar to the other two priors.</p><table-wrap id="table5" ><label><xref ref-type="table" rid="table">Table </xref>A1</label><caption><title> Autocorrelations and sample sizes by priors tested</title></caption><table><tbody><thead><tr><th align="center" valign="middle"  colspan="2"  ></th><th align="center" valign="middle" >Prior 1</th><th align="center" valign="middle" >Prior 2</th><th align="center" valign="middle" >Prior 3</th></tr></thead><tr><td align="center" valign="middle"  rowspan="2"  >Auto correlations</td><td align="center" valign="middle" >animal</td><td align="center" valign="middle" >0.017</td><td align="center" valign="middle" >0.024</td><td align="center" valign="middle" >0.007</td></tr><tr><td align="center" valign="middle" >units</td><td align="center" valign="middle" >0.014</td><td align="center" valign="middle" >0.019</td><td align="center" valign="middle" >0.010</td></tr><tr><td align="center" valign="middle"  rowspan="2"  >Effective Size</td><td align="center" valign="middle" >animal</td><td align="center" valign="middle" >&gt;8900</td><td align="center" valign="middle" >&gt;9000</td><td align="center" valign="middle" >&gt;8600</td></tr><tr><td align="center" valign="middle" >units</td><td align="center" valign="middle" >&gt;8600</td><td align="center" valign="middle" >&gt;8900</td><td align="center" valign="middle" >&gt;9300</td></tr></tbody></table></table-wrap>A.4. Effects of Priors on Estimated Heritability and Its Components Values<p><xref ref-type="table" rid="table">Table </xref>A2 shows the variance components and heritabilities for the three priors tested. The additive and phenotypic variance values as well as the heritabilities resulting from the use of the 3 priors differ little.</p><p>Prior 3 is chosen for the final multivariate model.</p><table-wrap id="table6" ><label><xref ref-type="table" rid="table">Table </xref>A2</label><caption><title> Additive variances; phenotypic variances and heritabilities of weights at different ages according to the priors</title></caption><table><tbody><thead><tr><th align="center" valign="middle" >Variables</th><th align="center" valign="middle" >Components</th><th align="center" valign="middle" >Prior1</th><th align="center" valign="middle" >Prior2</th><th align="center" valign="middle" >Prior3</th></tr></thead><tr><td align="center" valign="middle"  rowspan="3"  >Hatching weight (P0)</td><td align="center" valign="middle" >Va [CI]</td><td align="center" valign="middle" >0.601 [0.305, 0.936]</td><td align="center" valign="middle" >0.595 [0.298, 0.918]</td><td align="center" valign="middle" >0.596 [0.279, 0.903]</td></tr><tr><td align="center" valign="middle" >Vp [CI]</td><td align="center" valign="middle" >1.056 [0.797, 1.350]</td><td align="center" valign="middle" >1.054 [0.802, 1.347]</td><td align="center" valign="middle" >1.054 [0.789, 1.337]</td></tr><tr><td align="center" valign="middle" >h<sup>2</sup> [CI]</td><td align="center" valign="middle" >0.565 [0.336, 0.776]</td><td align="center" valign="middle" >0.561 [0.349, 0.789]</td><td align="center" valign="middle" >0.560 [0.345, 0.776]</td></tr><tr><td align="center" valign="middle"  rowspan="3"  >Weight at 4 weeks (P4)</td><td align="center" valign="middle" >Va [CI]</td><td align="center" valign="middle" >0.374 [0.133, 0.656]</td><td align="center" valign="middle" >0.374 [0.131, 0.658]</td><td align="center" valign="middle" >0.384 [0.143, 0.664]</td></tr><tr><td align="center" valign="middle" >Vp [CI]</td><td align="center" valign="middle" >1.236 [0.897, 1.578]</td><td align="center" valign="middle" >1.235 [0.920, 1.601]</td><td align="center" valign="middle" >1.236 [0.902, 1.588]</td></tr><tr><td align="center" valign="middle" >h<sup>2</sup> [CI]</td><td align="center" valign="middle" >0.302 [0.110, 0.500]</td><td align="center" valign="middle" >0.302 [0.109, 0.500]</td><td align="center" valign="middle" >0.310 [0.123, 0.506]</td></tr><tr><td align="center" valign="middle"  rowspan="3"  >Weight at 8 weeks (P8)</td><td align="center" valign="middle" >Va [CI]</td><td align="center" valign="middle" >0.504 [0.184, 0.854]</td><td align="center" valign="middle" >0.502 [0.174, 0.851]</td><td align="center" valign="middle" >0.506 [0.196, 0.864]</td></tr><tr><td align="center" valign="middle" >Vp [CI]</td><td align="center" valign="middle" >0.952 [0.705 - 1.200]</td><td align="center" valign="middle" >0.952 [0.707 - 1.206]</td><td align="center" valign="middle" >0.953 [0.718 - 1.211]</td></tr><tr><td align="center" valign="middle" >h<sup>2</sup> [CI]</td><td align="center" valign="middle" >0.523 [0.238 - 0.806]</td><td align="center" valign="middle" >0.521 [0.248 - 0.815]</td><td align="center" valign="middle" >0.522 [0.247 - 0.805]</td></tr><tr><td align="center" valign="middle"  rowspan="3"  >Weight at 12 weeks (P12)</td><td align="center" valign="middle" >Va [CI]</td><td align="center" valign="middle" >0.503 [0.172 - 0.865]</td><td align="center" valign="middle" >0.500 [0.179 - 0.861]</td><td align="center" valign="middle" >0.503 [0.182 - 0.853]</td></tr><tr><td align="center" valign="middle" >Vp [CI]</td><td align="center" valign="middle" >0.938 [0.704 - 1.194]</td><td align="center" valign="middle" >0.936 [0.704 - 1.186]</td><td align="center" valign="middle" >0.938 [0.710 - 1.193]</td></tr><tr><td align="center" valign="middle" >h<sup>2</sup> [CI]</td><td align="center" valign="middle" >0.529 [0.249 - 0.835]</td><td align="center" valign="middle" >0.527 [0.243 - 0.822]</td><td align="center" valign="middle" >0.528 [0.245 - 0.810]</td></tr><tr><td align="center" valign="middle"  rowspan="3"  >Weight at 16 weeks (P16)</td><td align="center" valign="middle" >Va [CI]</td><td align="center" valign="middle" >0.408 [0.142 - 0.701]</td><td align="center" valign="middle" >0.408 [0.147 - 0.711]</td><td align="center" valign="middle" >0.409 [0.150 - 0.696]</td></tr><tr><td align="center" valign="middle" >Vp [CI]</td><td align="center" valign="middle" >0.777 [0.577 - 0.998]</td><td align="center" valign="middle" >0.778 [0.581 - 0.999]</td><td align="center" valign="middle" >0.782 [0.591 - 1.006</td></tr><tr><td align="center" valign="middle" >h<sup>2</sup> [CI]</td><td align="center" valign="middle" >0.519 [0.241 - 0.810]</td><td align="center" valign="middle" >0.518 [0.236 - 0.804]</td><td align="center" valign="middle" >0.517 [0.240 - 0.798]</td></tr><tr><td align="center" valign="middle"  rowspan="3"  >Weight at 20 weeks (P20)</td><td align="center" valign="middle" >Va [CI]</td><td align="center" valign="middle" >0.360 [0.140 - 0.613]</td><td align="center" valign="middle" >0.361 [0.136 - 0.619]</td><td align="center" valign="middle" >0.361 [0.140 - 0.610]</td></tr><tr><td align="center" valign="middle" >Vp [CI]</td><td align="center" valign="middle" >0.736 [0.535 - 0.950]</td><td align="center" valign="middle" >0.737 [0.529 - 0.948]</td><td align="center" valign="middle" >0.743 [0.537 - 0.961]</td></tr><tr><td align="center" valign="middle" >h<sup>2</sup> [CI]</td><td align="center" valign="middle" >0.485 [0.227 - 0.748]</td><td align="center" valign="middle" >0.485 [0.218 - 0.743]</td><td align="center" valign="middle" >0.483 [0.233 - 0.742]</td></tr></tbody></table></table-wrap><p>Va: Variance additive; Vp: Phenotypic variance and [CI]: [Credibility interval].</p></sec></body><back><ref-list><title>References</title><ref id="scirp.121960-ref1"><label>1</label><mixed-citation publication-type="other" xlink:type="simple">Assoumane, I. and Ousseini, G.I. 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