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J. Y. Hsiao, C. Y. Tang and R. S. Chang, “An Efficient Algorithm for Finding a Maximum Weight 2-Independent Set on Interval-Graphs,” Information Processing Letters, Vol. 43, No. 5, 1992, pp. 229-235. Hdoi:10.1016/0020-0190(92)90216-I

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• TITLE: Hierarchy of Protein Loop-Lock Structures: A New Server for the Decomposition of a Protein Structure into a Set of Closed Loops

  AUTHORS: Simon Kogan, Zakharia Frenkel, Oleg Kupervasser, Zeev Volkovich

  KEYWORDS: Structural Alphabet; Loop-Lock Structure; Web Server; Protein; Amino Acids

  JOURNAL NAME: Computational Molecular Bioscience, Vol.3 No.1, March 27, 2013

  ABSTRACT: HoPLLS (Hierarchy of protein loop-lock structures) (http://leah.haifa.ac.il/~skogan/Apache/mydata1/main.html) is a web server that identifies closed loops-a structural basis for protein domain hierarchy. The server is based on the loop-and-lock theory for structural organisation of natural proteins. We describe this web server, the algorithms for the decomposition of a 3D protein into loops and the results of scientific investigations into a structural “alphabet” of loops and locks.