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G. D. Rose, P. J. Fleming, J. R. Banavar and A. Maritan, “A Backbone Based Theory of Protein Folding,” Proceedings of the National Academy of Science, Vol. 103, No. 45, 2006, pp. 16623-16333.
doi:10.1073/pnas.0606843103
has been cited by the following article:
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TITLE:
Levinthal’s Paradox Revisited, and Dismissed
AUTHORS:
Arieh Ben-Naim
KEYWORDS:
Protein Folding; Levinthal Paradox; Hydrophilic Forces; Markov Process
JOURNAL NAME:
Open Journal of Biophysics,
Vol.2 No.2,
April
27,
2012
ABSTRACT: This article is concerned with the so-called Levinthal’s paradox. It will be argued that many have sought a “solution” to Levinthal’s paradox, where in fact, the “solution” already appeared in Levinthal’s original articles. Most of the subsequent suggested “solutions” were inadequate solutions to a non-paradox. It is shown that the discovery of strong hydrophilic forces not only dismisses the Levintal paradox, but also provides a solution to the general problem of protein folding. A simple model based on the Markov process is presented to demonstrate how a strong biased-force can dramatically reduce the number of steps required to reach the stable native 3-D structure of the protein.