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Guerra-Assunção, J.A., Crampin, A.C., Houben, R.M.G.J., Mzembe, T., Mallard, K., Coll, F., Khan, P., Banda, L., Chiwaya, A., Pereira, R.P.A., McNerney, R., Fine, P.E.M., Parkhill, J., Clark, T.G. and Glynn, J.R. (2015) Large-Scale Whole Genome Sequencing of Mycobacterium tuberculosis Provides Insights into Transmission in a High Prevalence Area. eLife, 4, e05166.
https://doi.org/10.7554/eLife.05166

has been cited by the following article:

• TITLE: Characterization of Mycobacterium Species Circulating among Tuberculosis Patients in Bayelsa State, Nigeria

  AUTHORS: Smart Enoch Amala, Goodluck Silas, Amba Ollor Ollor, Vivian Nkemkanma Agi

  KEYWORDS: Tuberculosis, Non-Tuberculosis, Strains, Circulating, Bayelsa

  JOURNAL NAME: Journal of Tuberculosis Research, Vol.11 No.3, July 31, 2023

  ABSTRACT: Introduction: Tuberculosis is caused by infection with Mycobacterium tuberculosis. Looking at the evolution of the bacterium gene due to mutation is crucial to identify species circulating among patients in an area. WHO speculated that tuberculosis is caused by M. tuberculosis (MTB), but identification of the strains of MTB circulating in a particular area is important for the management of MTB and to identify pulmonary infections caused by non-tuberculosis mycobacterium. Contact tracing of drug resistant MTB in circulation in an area is also an important procedure of MTB therapeutic choice. Aim: This study aimed to isolate and identify Mycobacterium species circulating in Bayelsa State, Nigeria. Materials and Methods: A total of 102 sputum samples collected from MTB patients were cultured in Lowenstein Jensen (LJ) solid media. Isolates on LJ media were confirmed using Zeihl Nelseen staining method for AFB and Standard Diagnosis Bioline TB Ag MPT64 Rapid test kit. The 16s rRNA gene amplification, agarose gel electrophoresis, and gene sequencing were conducted. Phylogenic analysis and evolutional distances of the strains are computed using the Juke-cantor method. Result: Out of 102 sputum samples examined 15 (14.7%) had growth of Mycobacterium species (AFB positive). The extracted DNA of MTB amplified on agarose gel electrophoresis aligned horizontally at lanes 1 - 15 showing 16S gene band (1500 bp). Two 2 (2.0%) are non-tuberculosis Mycobacteria species, while 13 (12.7%) were M. tuberculosis. The non-tuberculosis Mycobacterium species isolated are Mycobacteriode abscesses and Mycobacterium kansassii strain FDAARGOS 1534. The tuberculosis strains are Mycobacterium tuberculosis MG003 and R2092 but the predominant strain was MG003. The degree of the genetic evolution of the non-MTB Mycobacterium kansassii strain FDAARGOS 1534 was 75.4%. Conclusion: The two major strains of Mycobacterium tuberculosis (MTB) circulating in Bayelsa State are MTB MG003 and MTB R2092; MTB MG003 was predominant. The non-tuberculosis species are Mycobacteriode abscesses and Mycobacterium kansasii.