TITLE:
BioAnalyzer: Bioinformatic Software of Routinely Used Tools for Analysis of Genomic Data
AUTHORS:
Peter Tharwat Habib, Alsamman Mahmoud Alsamman, Aladdin Hamwieh
KEYWORDS:
Biopython, Bioinformatics, FASTA, Genbank, Multiple Sequence Alignment, BLAST, NCBI, Data Visualization
JOURNAL NAME:
Advances in Bioscience and Biotechnology,
Vol.10 No.3,
March
21,
2019
ABSTRACT: The massive extension in biological data induced a
need for user-friendly bioinformatics tools could be used for routine
biological data manipulation. Bioanalyzer is a simple analytical software
implements a variety of tools to perform common data analysis on different
biological data types and databases. Bioanalyzer provides general aspects of
data analysis such as handling nucleotide data, fetching different data formats
information, NGS quality control, data visualization, performing multiple
sequence alignment and sequence BLAST. These tools accept common biological
data formats and produce human-readable output files could be stored on local
computer machines. Bioanalyzer has a user-friendly graphical user interface to
simplify massive biological data analysis and consume less memory and
processing power. Bioanalyzer source code was written through Python
programming language which provides less memory usage and initial startup time.
Bioanalyzer is a free and open source software, where its code could be
modified, extended or integrated in different bioinformatics pipelines.
Bioinformatics Produce huge data in FASTA and Genbank format which can be used
to produce a lot of annotation information which can be done with Python
programming language that open the door form bioinformatics tool due to their
elasticity in data analysis and simplicity which inspire us to develop new
multiple tool software able to manipulate FASTA and Genbank files. The goal
Develop new software uses Genomic
data files to produce annotated data. Software was written using python
programming language and biopython packages.