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Morris, A.L., MacArthur, M.W., Hutchinson, E.G. and Thornton, J.M. (1992) Stereochemical quality of protein structure coordinates. Proteins: Structure, Function, and Bioinformatics, 12, 345-364. doi:10.1002/prot.340120407

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• TITLE: Indonesian avian influenza H274Y mutant neuraminidase homology models assessment

  AUTHORS: Sigit Jaya Herlambang, Rosari Saleh

  KEYWORDS: Neuraminidase; Model Assessment; Homology Model; Mutant; Avian Influenza

  JOURNAL NAME: Journal of Biophysical Chemistry, Vol.2 No.3, August 11, 2011

  ABSTRACT: Five models of Indonesian H274Y mutant neuralminidase type 1 (N1) were generated from the template 3CKZ by homology modeling. The template has the best similarity percentage 97% with the model sequence. The models was evaluated to search the best model with DOPE, 3D-profiles and PROCHECK in a good rank. The results show model 3 as a potential model to be used in the simulation with the lowest DOPE score, highest verify-3D score and from Ramachandran plots we inferred that it also shared the 1st rank with model 4 based on the 99.4% of the residues found, without Glycine and Proline, at the most favoured and additionally allowed region of both model structures.