Prof. Shu-Lin Liu

Harbin Medical University, China

Email: [email protected]

Qualifications

Publications (Selected)

1. Liu H, Zeng Z, Afsharpad M, Lin C, Wang S, Yang H, Liu S, Kelemen LE, Xu W, Ma W, Xiang Q, Mastriani E, Wang P, Wang J, Liu S-L, Johnston RN and Köbel M (2020) Overexpression of IGF2BP3 as a Potential Oncogene in Ovarian Clear Cell Carcinoma. Front. Oncol. 9:1570. doi: 10.3389/fonc.2019.01570
2. Zhuang H, Cheng L, Wang Y, Zhang Y-K, Zhao M-F, Liang G-D, Zhang M-C, Li Y-G, Zhao J-B, Gao Y-N, Zhou Y-J and Liu S-L (2019) Dysbiosis of the Gut Microbiome in Lung Cancer. Front. Cell. Infect. Microbiol. 9:112. doi: 10.3389/fcimb.2019.00112
3. Zhuang H, Han J, Cheng L and Liu S-L (2019) A Positive Causal Influence of IL-18 Levels on the Risk of T2DM: A Mendelian Randomization Study. Front. Genet. 10:295. doi: 10.3389/fgene.2019.00295
4. Li FF, Han Y, Shi S, Li X, Zhu XD, et al. (2015) Characterization of Transcriptional Repressor Gene MSX1 Variations for Possible Associations with Congenital Heart Diseases. PLOS ONE 10(11): e0142666. https://doi.org/10.1371/journal.pone.0142666
5. Wang, CX., Zhu, SL., Wang, XY. et al. Complete genome sequence of Salmonella enterica subspecies arizonae str. RKS2983. Stand in Genomic Sci 10, 30 (2015). https://doi.org/10.1186/s40793-015-0015-z
6. Deng X, Zhou J, Li FF, Yan P, Zhao EY, et al. (2014) Characterization of Nodal/TGF-Lefty Signaling Pathway Gene Variants for Possible Roles in Congenital Heart Diseases. PLOS ONE 9(8): e104535. https://doi.org/10.1371/journal.pone.0104535
7. Liu, ZH., Xu, Y., Duo, LB. et al. Pseudomonas aeruginosa isolates of distinct sub-genotypes exhibit similar potential of antimicrobial resistance by drugs exposure. Antonie van Leeuwenhoek 103, 797–807 (2013). https://doi.org/10.1007/s10482-012-9862-4
8. Feng Y, Johnston RN, Liu GR, Liu SL (2013) Genomic Comparison between Salmonella Gallinarum and Pullorum: Differential Pseudogene Formation under Common Host Restriction. PLOS ONE 8(3): e59427. https://doi.org/10.1371/journal.pone.0059427
9. Ye Feng, Ji Liu, Yong-Guo Li, Feng-Lin Cao, Randal N. Johnston, Jin Zhou, Gui-Rong Liu, Shu-Lin Liu, Inheritance of the Salmonella virulence plasmids: Mostly vertical and rarely horizontal, Infection, Genetics and Evolution, Volume 12, Issue 5, 2012, Pages 1058-1063, ISSN 1567-1348, https://doi.org/10.1016/j.meegid.2012.03.004. (https://www.sciencedirect.com/science/article/pii/S156713481200069X)
10. Ye Feng, Zhe Chen, Shu-Lin Liu. Gene decay inShigellaas an incipient stage of host-adaptation. PLoS ONE. In press.
11. Jitao Guo, Manoj K.M. Nair, Estela M. Galván, Shu-Lin Liu, Dieter M. Schifferli. 2011. Tn5AraOut mutagenesis for the identification of Yersinia pestisgenes involved inresistance towards cationic antimicrobial peptides. Microbial Pathogenesis. 51: 121-132.
12. Qing-Hua Zou, Qing-Hai Li, Hong-Yun Zhu, Ye Feng, Da-Ling Zhu, Yong-Guo Li, Jin Zhou, Randal N. Johnston, Gui-Rong Liu, Shu-Lin Liu. 2010. SPC-P1: a pathogenicity-associated prophage of Salmonella paratyphi C. BMC Genomics.11:729.
13. Fang Chen, Wei-Qiao Liu, Abraham Eisenstark, Randal N. Johnston, Gui-Rong Liu, Shu-Lin Liu. 2010. Multiple Genetic Switches Spontaneously Regulating Bacterial Mutability. BMC Evolutionary Biology. 10:277.
14. Fang Chen, Wei-Qiao Liu, Zhen-Hong Liu, Qing-Hua Zou, Ye Wang, Yong-Guo Li, Jin Zhou, Abraham Eisenstark, Randal N. Johnston, Gui-Rong Liu, Shu-Lin Liu. 2010. mutL as a genetic switch of bacterial mutability: turned on or off through repeat copy number changes. FEMS Microbiology Letters. 312:126 - 312.
15. Lemin Wang, Zhu Gong, Aibin Liang, Yuan Xie, Shu-Lin Liu, Zhang Yu, Ling Wang, Yenan Wang. 2010. Compromised T cell immunity and virus-like structure in a patient with pulmonary hypertension. American Journal of Respiratory and Critical Care Medicine. 182 (3): 434-5.
16. Meng JZ, Dong YJ, Huang H, Li S, Zhong Y, Liu SL, Wang YD. 2010. Oral vaccination with attenuated Salmonella encoding T-cell epitopes from tumor antigen NY-ESO-1 induced specific CTL responses. Clin Vaccine Immunol. 17(6):889-94.
17. Cheng-Zhi Wang, Xiao-Qing Ma, Dong-Hui Yang, Zhi-Rong Guo, Gui-Rong Liu, Ge-Xin Zhao, Jie Tang, Ya-Nan Zhang, Miao Ma, Shao-Qing Cai, Bao-Shan Ku, Shu-Lin Liu. 2010. Production of enterodiol from defatted flaxseeds through biotransformation by human intestinal bacteria. BMC Microbiology. 10:115.
18. Huang -H, Wang -Y-J, White -AP, Deng -L-Y, Dong -R, Liu -G-R, Liu -S-L, Wang -Y-D. 2009. Salmonella expressing a T-cell epitope from Sendai virus are able to induce anti-infection immunity. Journal of Medical Microbiology. 58: 1236-1242.
19. Fang Chen, Cornelis Poppe, Gui-Rong Liu, Yong-Guo Li, Yi-Hong Peng, Kenneth E. Sanderson, Randal N. Johnston, Shu-Lin Liu. 2009. A Genome Map of Salmonella enterica serovar Agona: Numerous Insertions and Deletions Reflecting the Evolutionary History of a Human Pathogen. FEMS Microbiology Letters. 293: 188-195.
20. Wei-Qiao Liu, Ye Feng, Yan Wang, Qing-Hua Zou, Fang Chen, Ji-Tao Guo, Yi-Hong Peng, Yan Jin, Yong-Guo Li, Song-Nian Hu, Randal N. Johnston, Gui-Rong Liu, Shu-Lin Liu. 2009. Salmonella paratyphi C: diverging from S. choleraesuis and converging with S. typhi. PLoS ONE. 4(2): e4510.
21. Zhang -L-J*, Huang –H*, Deng -L-Y, Chu -M, Xu -L, Fu -J, Zhu -Y, Zhang -X, Liu -S-L, Zhou –Z-C, Wang -Y-D. TPX2 inmalignantly transformed human bronchial epithelial cells by anti-benzo[a]pyrene-7,8-diol-9,10-epoxide. Toxicology.2008 Oct 30; 252(1-3):49-55.
22. Ye-Jun Wang, Yan Hou, He Huang, Gui-Rong Liu , Aaron P. White, Shu-Lin Liu. 2008. Two oral HBx vaccines delivered by live attenuated Salmonella: both eliciting effective anti-tumor immunity. Cancer Letters. 263: 67-76.
23. Zheng, X., S.-L. Liu. 2008. The relaxing ori-ter balance of Mycoplasma genomes. Science in China. 51 (2): 1-8.
24. Liu, W.-Q., G.-R. Liu, J.-Q. Li, G.-M. Xu, D.-N. Qi, X.-Y. He, J. Deng, F.-M. Zhang, R. N. Johnston, S.-L. Liu. 2007. Diverse genome structures of Salmonella paratyphi C. BMC Genomics. 8: 290.
25. Gong, J., W.-Q. Liu, G.-R. Liu, F. Chen, J.-Q. Li, G.-M. Xu, L. Wang, R. N. Johnston, A. Eisenstark, S.-L. Liu. 2007. Spontaneous conversion between mutL and 6bp mutL in Salmonella typhimurium LT7: association with genome diversification and possible roles in bacterial adaptation. Genomics. 90: 542-549.
26. Wu, K.-Y., G.-R. Liu, W.-Q. Liu, A. Q. Wang, S. Zhan, K. E. Sanderson, R. N. Johnston, S.-L. Liu. 2005. The genome of Salmonella gallinarum: distinct insertions/deletions and rare rearrangements. J. Bacteriol. 188: 4720-4727.
27. Kothapalli, S., S. Nair, S. Alokam, T. Pang, R. Khakhria, D. Woodward, W. Johnson, B. A. D. Stocker, K. E. Sanderson, S.-L. Liu. 2005. Diversity of genome structure inSalmonella entericaserovar Typhipopulations. J. Bacteriol. 187: 2638-2650.
28. Nair, S., S. Alokam, S. Kothapalli, S. Porwollik, M. McClelland, S.-L. Liu, K. E. Sanderson. 2004. Salmonella entericaserovar Typhi strains harboring deletions of SPI7. J. Bacteriol. 186:3214-23.
29. Song, J., A. Ware,S.-L. Liu, M. Surette. 2004. Comparative genomics via wavelet analysis for closely related bacteria. EURASIP Journal on Applied Signal Processing. 14: 1-8.
30. Zheng, J.-F., G.-R. Liu, W.-F. Zhu, Y-G.Zhou, S.-L. Liu. 2004. Phylogenetic clusters of Rhizobia revealed by genome structures. Science in China 47 (3): 268-278.
31. Song, J., A. Ware, S.-L. Liu, M. Surette. 2004. Comparative genomics via wavelet analysis for closely related bacteria. EURASIP Journal on Applied Signal Processing. 14: 1-8.
32. Song, J., A. Ware and S.-L. Liu. 2003. Wavelet to predict bacterial ori and ter: a tendency towards a physical balance. BMC Genomics 4: 17.
33. Liu, G.-R., K. Edwards, A. Eisenstark, Y.-M. Fu, W.-Q. Liu, K.E. Sanderson, R.N. Johnston, and S.-L. Liu. 2003. Genomic diversification among archival strains of Salmonella typhimurium LT7. J. Bacteriol. 185 (7): 2131-2142.
34. Alokam, S., S.-L. Liu, K. Said, K. E. Sanderson. 2002. Inversions over the Terminus region in Salmonella and E. coli: IS200s as the sites of homologous recombination inverting the chromosome of Salmonella enterica serovar Typhi. J. Bacteriol. 184 (22): 6190-6197.
35. Liu, S.-L., G.-R. Liu, S.-X. Li, W.-Q. Liu, J.-F. Zheng, W.-F. Zhu, H.-X. Gu, X.-K. Guo, K. E. Sanderson, Y.-G. Zhou and R. N. Johnston. 2002. Bacterial genome structure: a molecular marker to reveal phylogenetic clusters. J. Peking Univ. [Med]. 34(5): 457-463
36. Liu, G.-R., A. Rahn, W.-Q. Liu, K. E. Sanderson, R. N. Johnston, and S.-L. Liu. 2002. The evolving genome of Salmonella pullorum. J. Bacteriol. 184 (10): 2626-2633.
37. Oresnik, I. J., S.-L. Liu, C. K. Yost, and M. F. Hynes. 2000. Megaplasmid pRme2011aof Sinorhizobium meliloti is not required for viability. J. Bacteriol. 182 (12): 3582-3586.
38. Liu, S.-L., A. Schryvers, K. E. Sanderson, and R. N. Johnston. 1999. Bacterial phylogenetic clusters revealed by genome structure. J. Bacteriol. 181 (21): 6747-6755.
39. Ng, I., S.-L. Liu, and K. E. Sanderson. 1999. The role of genomic rearrangements in producing new ribotypes in Salmonella typhi. J. Bacteriol. 181 (11): 3536-3541.
40. Liu, S.-L., and K. E. Sanderson. 1998. Homologous recombination between rrn operons rearranges the chromosome in host-specialized species of Salmonella. FEMS Microbiology Letters 164: 275-281.
41. Sanderson, K. E. and S.-L. Liu. 1998. Chromosomal rearrangements in Salmonella spp. Med. J. Indones. 7 (Suppl. 1): 30-37.
42. Thong, K. L., S. Nair, G. Subramaniam, S. Puthucheary, R. Yassin, Y. M. Cheong, S.-L. Liu, K. E. Sanderson, A. M. Cordano, T. Pang, P. Sudarmono, E. Soewandojo, I. Handojo, M. Padmidewi, S. Sarasombath, M. Passey, B. Combs, and R. Chaudhry. 1998. Genetic dynamics and molecular epidemiology of Salmonella typhi. Med. J. Indones. 7 (Suppl. 1): 147-150.

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