Prof. Emmanuel Dias-Neto

Laboratory of Medical Genomics and Bioinformatics

AC Camargo Hospital, Brazil

Email: [email protected]

Qualifications

1994-1997 Ph.D., Universidade Federal de Minas Gerais

Publications (Selected)

1. Pena SDJ, Barreto G, Vago AR, Marco LA, Reinach FC, Dias-Neto E, Simpson AJG. (1994). Sequence-specific "Gene signatures" obtained by PCR with single specific primers at low stringency (LSSP-PCR). Proc Natl Acad Sci USA91: 1946-1949
2. Dias-Neto E, Corrêa RG, Verjovski-Almeida S, Briones MRS, et al. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Proc Natl Acad Sci USA, 97:3491-3496, 2000.
3. Simpson AJG, Reinach, FC, Arruda, P, Abreu, FA, and Acencio, M, Alvarenga, et al. The genome sequence of the plant pathogenXylella fastidiosa. Nature, 406:151-157, 2000.
4. Souza SJ, Camargo AA, Briones MRS, Costa FF, and Nagai MA, et al., Dias-Neto E, Simpson AJ Identification of human chromosome 22 transcribed sequences with ORF expressed sequence tags. Proc Natl Acad Sci USA, 97:12690-12693, 2000.
5. Camargo AA, Samaia HPB, Dias-Neto E, Simão DF, and Migotto IA, et al. A quantitative analysis of human transcript shotgun sequencing. Proc Natl Acad Sci USA, 98:12103-12108, 2001.
6. Verjovski-Almeida S, de Marco R, Martins EA, Guimarães PEM, and Ojopi EPB, Paquola A, Piazza J, Nishiyama M, Kitajima JP, Adamson RE, Ashton P, Bonaldo MF, Coulson PS, Dillon GP, Faria L, Gregório SP, Ho PL, Leite RA, Malaquias LC, Marques RC, Miyasato PA, Nascimento A, Ohlweiler F, Reis EM, Riberio MA, Sá RG, Stukart GC, Soares MB, Gargioni C, Kawano T, Rodrigues V, Madeira A, Wilson RA, Menck C, Setúbal JC, Leite LC, Dias-Neto E. Transcriptome analysis of the acoelomate human parasiteSchistosoma mansoni. Nature Genetics, 35:148-157, 2003.
7. Brentani HP, Caballero OL, Camargo AA, da Silva AM, and da Silva Jr WA, Dias-Neto E, Grivet M et al. The generation and utilization of a cancer oriented representation of the human transcriptome, using expressed sequence tags. Proc Natl Acad Sci USA, 100:13418-13423, 2003.
8. De Marco R, Kowaltowski AT, Machado AA, Soares MB, Gargioni C, Kawano T, Rodrigues V, Madeira A, Wilson RA, Menck CFM, Setúbal JC, Dias-Neto E, Leite LCC, and Verjovski-Almeida S. Saci-1, -2, -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasiteSchistosoma mansoni. J Virology, 78: 2967-2978, 2004.
9. Reis EM, Ojopi EPB, Alberto FL, Rahal P, et al., Tajara EH, Dias-Neto E. Large-scale transcriptome analyses reveal new genetic marker candidates of head, neck and thyroid cancer. Cancer Res, 65:1693-1699, 2005.
10. Staquicini FI, Dias-Neto E, Li J, Snyder EY, Sidman RL, Pasqualini R, Arap W. Discovery of a functional protein complex of netrin-4, laminin gamma1 chain, and integrin alpha6beta1 in mouse neural stem cells. Proc Natl Acad Sci USA 106:2903-8, 2009.
11. Martins-de-Souza, Daniel & Maccarrone, Giuseppina & Schmitt, Andrea & Falkai, Peter & Dias-Neto, Emmanuel & Gattaz, Wagner & Turck, Chris. (2012). PROTEOME ANALYSES OF POST-MORTEM BRAIN TISSUE FROM PATIENTS WITH SCHIZOPHRENIA SUGGEST DYSFUNCTION OF OLIGODENDROCYTES AND ASTROCYTES AND POTENTIAL BIOMARKER CANDIDATES?. Schizophrenia Research. 136. S61. 10.1016/S0920-9964(12)70231-1.
12. Heath, Ashley & Deluge, Norha & Amorim, Maria & Dias-Neto, Emmanuel. (2013). Development and Use of qPCR Assays for Detection and Study of Neglected Tropical and Emerging Infectious Diseases. 10.1201/b14930-19.
13. Carneiro, Juliana & Nunes, Diana & Dias-Neto, Emmanuel. (2014). Abstract 532: Evaluation of the role of miRNA-4728-3p, a miRNA located in an intron of HER2 gene, in breast cancer stem cells. Cancer Research. 74. 532-532. 10.1158/1538-7445.AM2014-532.
14. Nunes, Diana & Dias-Neto, Emmanuel & Cardó Vila, Marina & Edwardse, Julianna & Andrey, Shauntel & Giordanof, Ricardo & Mandeline, Jami & Brentani, Helena & Hasselgrenc, Catrin & Yaoc, Virginia & Marchiò, Serena & Pereira, Carlos & Passetti, Fabio & Calink, George & Sidmanl, Richard & Arap, Wadih & Pasqualini, Renata. (2015). Synchronous down-modulation of miR-17 family members is an early causative event in the retinal angiogenic switch. Proceedings of the National Academy of Sciences. 112. 201500008. 10.1073/pnas.1500008112.
15. Chernomoretz, Ariel & Stolovitzky, Gustavo & Łabaj, Paweł & Graf, Alexandra & Darling, Aaron & Burke, Catherine & Noushmehr, Houtan & Moraes, Milton & Dias-Neto, Emmanuel & Guo, Yongli & Xie, Zhi & Lee, Patrick & Shi, Leming & Ruiz-Perez, Carlos & Zambrano, María & Siam, Rania & Ouf, Amged & Richard, Hugues & Lafontaine, Ingrid & Pasolli, Edoardo. (2016). The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report. Microbiome. 4.
16. Dobroff, Andrey & D'Angelo, Sara & Eckhardt, Bedrich & Ferrara, Fortunato & Staquicini, Daniela & Cardó Vila, Marina & Staquicini, Fernanda & Nunes, Diana & Kim, Kisu & Driessen, Wouter & Hajitou, Amin & Lomo, Lesley & Barry, Marc & Krishnamurthy, Savitri & Sahin, Aysegul & Woodward, Wendy & Prossnitz, Eric & Anderson, Robin & Dias-Neto, Emmanuel & Pasqualini, Renata. (2016). Towards a transcriptome-based theranostic platform for unfavorable breast cancer phenotypes. Proceedings of the National Academy of Sciences of the United States of America. 113. 10.1073/pnas.1615288113.
17. Ferreira, Elisa & Barros, Bruna & Souza, Jorge & Almeida, Renan & Torrezan, Giovana & Garcia-Rosa, Sheila & Krepischi, Ana & Mello, Celso & Cunha, Isabela & Pinto, Clovis & Soares, Fernando & Dias-Neto, Emmanuel & Lopes, Ademar & Souza, Sandro & Carraro, Dirce. (2016). A genomic case study of desmoplastic small round cell tumor: comprehensive analysis reveals insights into potential therapeutic targets and development of a monitoring tool for a rare and aggressive disease. Human Genomics. 10. 10.1186/s40246-016-0092-0.
18. Dias-Neto, Emmanuel & Nunes, Diana & Thomas, Andrew & Smith, Tracey & Rao, Arpit & Lauer, Richard & Chen, Isan & Arap, Wadih & Pasqualini, Renata. (2017). PCA3 upregulation in prostate cancer: Analysis in a cohort of 497 subjects from TCGA. Journal of Clinical Oncology. 35. e16578-e16578. 10.1200/JCO.2017.35.15_suppl.e16578.
19. Lauer, Richard & Barry, Marc & Wu, Jin & Lee, Ji-Hyun & Mccance, Dennis & Du, Ruofei & Rao, Arpit & Dobroff, Andrey & Dias-Neto, Emmanuel & Chen, Isan & Pasqualini, Renata & Arap, Wadih. (2017). PRUNE2 and PCA3 expression in paired non-malignant and tumor specimens from radical prostatectomy patients with gleason score 7 prostate cancer. Journal of Clinical Oncology. 35. e16582-e16582. 10.1200/JCO.2017.35.15_suppl.e16582.
20. Ramirez, Marcel & Amorim, Maria & Gadelha, Catarina & Milic, Ivana & Welsh, Joshua & Freitas, Vanessa & Nawaz, Muhammad & Akbar, Naveed & Couch, Yvonne & Makin, Laura & Cooke, Fiona & Vettore, Andre & Batista, Patricia & Cordeiro, Roberta & Pezuk, Julia & Rosa Fernandes, Livia & Carreira, Ana Claudia & Devitt, Andrew & Jacobs, Laura & Dias-Neto, Emmanuel. (2018). Technical Challenges of Working with Extracellular Vesicles. Nanoscale. 10. 881-906. 10.1039/C7NR08360B.
21. Rosa, Sheila & Trivella, Daniela & Marques, Vanessa & Serafim, Rodolfo & Gc, Jose & Cetrulo Lorenzi, Julio Cesar & Molfetta, Greice & Christo, Paulo & Olival, Guilherme & Marchitto, Vania & Brum, Doralina & Sarraf Sabedot, Thais & Noushmehr, Houtan & Farias, Alessandro & Santos, Leonilda & Nogueira-Machado, José & Souza, Jorge & Romano, Camila & Conde, Rodrigo & Dias-Neto, Emmanuel. (2019). A non-functional galanin receptor-2 in a multiple sclerosis patient. The Pharmacogenomics Journal. 19. 10.1038/s41397-018-0032-6.
22. Casotti, Márcia & Gryschek, Ronaldo & Paula, Fabiana & Gomes-Gouvêa, Michele & Pinho, Joao & Tuan, Roseli & Dias-Neto, Emmanuel & Luna, Expedito & Espírito-Santo, Maria. (2020). Molecular detection of prepatent Schistosoma mansoni infection in Biomphalaria glabrata snail vectors. Revista do Instituto de Medicina Tropical de São Paulo. 62. 10.1590/s1678-9946202062017.
23. Danko, David & Bezdan, Daniela & Afshin, Evan & Ahsanuddin, Sofia & Bhattacharya, Chandrima & Chng, Kern Rei & Donnellan, Daisy & Hect, Jochen & Jackson, Katelyn & Kuchin, Katerina & Karasikov, Mikhail & Lyons, Abigail & Mak, Lauren & Meleshko, Dmitry & Mustafa, Harun & Mutai, Beth & Neches, Russell & Ng, Amanada & Nikolayeva, Olga & Consortium, The. (2021). A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell. 184. 1-18. 10.1016/j.cell.2021.05.002.
24. Albuquerque, Gabriela & Moda, Bruno & Serpa, Marianna & Branco, Gabriela & Defelicibus, Alexandre & Takenaka, Isabella & Amorim, Maria & Miola, Elizabeth & Martins, Valquiria & Torres, Katia & Bezerra, Stephania & Claro, Laura & Pelosof, Adriane & Sztokfisz, Claudia & Abrantes, Lais & Coimbra, Felipe & Kowalski, Luiz & Alves, Fabio & Zequ, Stênio & Dias-Neto, Emmanuel. (2022). Evaluation of Bacteria and Fungi DNA Abundance in Human Tissues. Genes. 13. 237. 10.3390/genes13020237.
25. Untergasser, Andreas & Hellemans, Jan & Ruijter, Jan & van den Hoff, Maurice & Dragomir, Mihnea & Adamoski, Douglas & Dias, Sandra & Reis, Rui & Ferracin, Manuela & Dias-Neto, Emmanuel & Marsh, Ian & Fabbri, Muller & Goel, Ajay & Slaby, Ondrej & Knutsen, Erik & Chen, Baoqing & Negrini, Massimo & Calin, George. (2023). Disclosing quantitative RT-PCR raw data during manuscript submission:a call for action. Molecular oncology. 17. 10.1002/1878-0261.13418.
26. Valieris, Renan & Martins, Luan & Defelicibus, Alexandre & Bueno, Adriana & Osorio, Cynthia & Carraro, Dirce & Dias-Neto, Emmanuel & Rosales, Rafael & Figueiredo, Jose & Silva, Israel. (2024). Weakly-supervised deep learning models enable HER2-low prediction from H &E stained slides. Breast Cancer Research. 26. 10.1186/s13058-024-01863-0.

Personal Profile

https://orcid.org/0000-0001-5670-8559
https://www.researchgate.net/profile/Emmanuel-Dias-Neto
https://www.webofscience.com/wos/author/record/A-5869-2008
Web of Science ResearcherID: A-5869-2008