Molecular Dynamics Simulation - Articles - Scientific Research Publishing

Diffusion in Liquids: Results of Calculations by Molecular Dynamics Method (Articles)

Georgii V. Kharlamov

Journal of Applied Mathematics and Physics Vol.13 No.6, June 30, 2025

DOI: 10.4236/jamp.2025.136121 70 Downloads 436 Views Citations
Structural Characterization of the D-Tyr-tRNA^Tyr Deacylase from Bacillus lichenformis, an Organism of Great Industrial Importance (Articles)

Angshuman Bagchi

Computational Molecular Bioscience Vol.1 No.1, December 28, 2011

DOI: 10.4236/cmb.2011.11001 2,878 Downloads 6,977 Views Citations
StochSD: A Full Potential CSS Language for Dynamic and Stochastic Modelling, Simulation and Statistical Analysis (Articles)

Leif Gustafsson, Erik Gustafsson, Magnus Gustafsson

Open Journal of Modelling and Simulation Vol.10 No.2, April 29, 2022

DOI: 10.4236/ojmsi.2022.102012 330 Downloads 1,843 Views Citations
Molecular dynamics simulations exploring the interaction between DNA and metalated bleomycin (Articles)

Viraja R. Palwai, Leif A. Eriksson

Journal of Biophysical Chemistry Vol.2 No.2, June 2, 2011

DOI: 10.4236/jbpc.2011.22021 5,858 Downloads 11,282 Views Citations
More Stable, More Estrogenic: The SERM-ERα LBD Complex (Articles)

Li Gao, Yaoquan Tu, Leif A. Eriksson

Journal of Biophysical Chemistry Vol.2 No.3, August 9, 2011

DOI: 10.4236/jbpc.2011.23029 4,831 Downloads 9,163 Views Citations
Molecular dynamics simulations of a DNA photolyase protein: High-mobility and conformational changes of the FAD molecule at low temperatures (Articles)

Kholmirzo Kholmurodov, Ermuhammad Dushanov, Kenji Yasuoka

Advances in Bioscience and Biotechnology Vol.3 No.3, June 19, 2012

DOI: 10.4236/abb.2012.33025 5,872 Downloads 10,864 Views Citations
Molecular Simulation of Ion Transport at the Water/Vapor Interface (Articles)

Jalal Dweik, Mahmoud Srour, Khaled Karaky, Marwan Kobeissi, Wissam Joumaa, Khalil Abou-Saleh

Open Journal of Physical Chemistry Vol.2 No.3, August 31, 2012

DOI: 10.4236/ojpc.2012.23020 5,309 Downloads 9,888 Views Citations
Molecular Dynamics Study on Mechanical Properties in the Structure of Self-Assembled Quantum Dot (Articles)

Tatsuya Yamaguchi, Ken-ichi Saitoh

World Journal of Nano Science and Engineering Vol.2 No.4, December 14, 2012

DOI: 10.4236/wjnse.2012.24025 5,535 Downloads 8,445 Views Citations
Validation of the CHARMM27 force field for nucleic acids using 2D nuclear overhauser effect spectroscopy (Articles)

Kirill Zinovjev, Edvards Liepinsh

Journal of Biophysical Chemistry Vol.4 No.2, May 24, 2013

DOI: 10.4236/jbpc.2013.42008 3,266 Downloads 5,520 Views Citations
Structure and Mechanical Behavior of Cellulose Nanofiber and Micro-Fibrils by Molecular Dynamics Simulation (Articles)

Ken-ichi Saitoh, Haruhiko Ohno, Syunichiro Matsuo

Soft Nanoscience Letters Vol.3 No.3, July 16, 2013

DOI: 10.4236/snl.2013.33011 8,749 Downloads 12,228 Views Citations
Biophysical Characterization of Genistein in Its Natural Carrier Human Hemoglobin Using Spectroscopic and Computational Approaches (Articles)

Biswapathik Pahari, Sandipan Chakraborty, Bidisha Sengupta, Sudip Chaudhuri, William Martin, Jasmine Taylor, Jordan Henley, Donald Davis, Pradip K. Biswas, Amit K. Sharma, Pradeep K. Sengupta

Food and Nutrition Sciences Vol.4 No.8A, July 29, 2013

DOI: 10.4236/fns.2013.48A011 5,125 Downloads 8,173 Views Citations
This article belongs to the Special Issue on Antioxidant Research in Food Science
Evaluation of CDK6 and p16/INK4a-Derived Peptides Interaction (Articles)

Andrey Kazennov, Andrey Alekseenko, Vladimir Bozhenko, Tatiana Kulinich, Nikolay Shuvalov, Yaroslav Kholodov

Computational Molecular Bioscience Vol.3 No.3, August 22, 2013

DOI: 10.4236/cmb.2013.33007 3,635 Downloads 6,615 Views Citations
MD Simulated Microstructure of Liquid Sodium Alloyed with Lead (Articles)

Inessa Yu. Shimkevich, Alexander L. Shimkevich

Materials Sciences and Applications Vol.5 No.8, June 27, 2014

DOI: 10.4236/msa.2014.58058 3,075 Downloads 4,663 Views Citations
DNA Methyltransferases Directed Anti-Cancerous Plant Medicine (Xanthomicrol and Galloyl) Based Molecular Docking and Dynamics Simulation (Articles)

Ehsan Heidari Soureshjani, Ali Kazemi Babaheydari, Elahe Saberi

Computational Molecular Bioscience Vol.5 No.2, June 30, 2015

DOI: 10.4236/cmb.2015.52003 3,357 Downloads 4,609 Views Citations
A Molecular Dynamics Study on the Effects of Lattice Defects on the Phase Transformation from BCC to FCC Structures (Articles)

Takuya Uehara

Materials Sciences and Applications Vol.10 No.8, August 16, 2019

DOI: 10.4236/msa.2019.108039 1,288 Downloads 3,130 Views Citations
A Molecular Dynamics Approach for Optimizing Beam Intensities in IMPT Treatment Planning (Articles)

Li Liao, Gino J. Lim, Xiaodong Zhang

Journal of Applied Mathematics and Physics Vol.7 No.9, September 28, 2019

DOI: 10.4236/jamp.2019.79146 745 Downloads 1,977 Views Citations
Molecular Dynamics Study on Transmission Mechanism of Torsional Deformation in Cellulose Nanofibers with Hierarchical Structure (Articles)

Kentaro Takada, Ken-Ichi Saitoh, Tomohiro Sato, Masanori Takuma, Yoshimasa Takahashi

Soft Nanoscience Letters Vol.9 No.4, October 24, 2019

DOI: 10.4236/snl.2019.94004 718 Downloads 1,989 Views Citations
Structure, Plastic Deformation of Polyethylene: A Molecular Dynamics Method (Articles)

Dung Nguyen Trong, Tuan Tran Quoc, Hue Dang Thi Minh, Cuong Nguyen Chinh, Van Duong Quoc

Advances in Materials Physics and Chemistry Vol.10 No.6, June 30, 2020

DOI: 10.4236/ampc.2020.106010 1,206 Downloads 4,453 Views Citations
Particle Modeling Based on Interatomic Potential and Crystal Structure: A Multi-Scale Simulation of Elastic-Plastic Deformation of Metallic Material (Articles)

Ken-Ichi Saitoh, Naoya Hanashiro

World Journal of Nano Science and Engineering Vol.11 No.3, August 17, 2021

DOI: 10.4236/wjnse.2021.113003 551 Downloads 1,838 Views Citations
Mechanistic Insights into Structural Stability of the Selectivity Filters in Typical Cation Channels (Articles)

Zhoubin Tang, Hu Qiu, Wanlin Guo

Journal of Materials Science and Chemical Engineering Vol.10 No.7, July 29, 2022

DOI: 10.4236/msce.2022.107002 264 Downloads 1,079 Views Citations

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