DNA; Bleomycin; Molecular dynamics; Binding energy; Strand break - Articles

Molecular dynamics simulations exploring the interaction between DNA and metalated bleomycin (Articles)

Viraja R. Palwai, Leif A. Eriksson

Journal of Biophysical Chemistry Vol.2 No.2, June 2, 2011

DOI: 10.4236/jbpc.2011.22021 5,896 Downloads 11,349 Views Citations
The influence of DNA concentration in the experiment of DNA damage induced by 7 Li ions and γ rays (Articles)

Fuquan Kong, Xiao Wang, Meinan Ni, Li Sui, Kui Zhao

Health Vol.2 No.8, August 26, 2010

DOI: 10.4236/health.2010.28143 4,531 Downloads 8,692 Views Citations
MD Simulations of the P53 oncoprotein structure: the effect of the Arg273→His mutation on the DNA binding domain (Articles)

Kholmirzo Kholmurodov, Ermuhammad Dushanov, Kenji Yasuoka

Advances in Bioscience and Biotechnology Vol.2 No.5, October 13, 2011

DOI: 10.4236/abb.2011.25048 5,086 Downloads 10,254 Views Citations
Molecular dynamics simulations of a DNA photolyase protein: High-mobility and conformational changes of the FAD molecule at low temperatures (Articles)

Kholmirzo Kholmurodov, Ermuhammad Dushanov, Kenji Yasuoka

Advances in Bioscience and Biotechnology Vol.3 No.3, June 19, 2012

DOI: 10.4236/abb.2012.33025 5,894 Downloads 10,939 Views Citations
Force Field Based MM2 Molecule-Surface Binding Energies for Graphite and Graphene (Articles)

Jae H. Son, Thomas R. Rybolt

Graphene Vol.2 No.1, January 24, 2013

DOI: 10.4236/graphene.2013.21004 5,690 Downloads 9,947 Views Citations
Synthesis, Characterization, Antimicrobial and DNA Binding Studies of a Tetradentate N2O2 Amino Acid Schiff Base and Its Coordination Compounds (Articles)

Temitayo O. Aiyelabola, Daniel P. Otto, Johan H. L. Jordaan, Ezekiel O. Akinkunmi, Idowu Olawuni

Advances in Biological Chemistry Vol.11 No.1, February 10, 2021

DOI: 10.4236/abc.2021.111004 796 Downloads 2,624 Views Citations
DNA Methyltransferases Directed Anti-Cancerous Plant Medicine (Xanthomicrol and Galloyl) Based Molecular Docking and Dynamics Simulation (Articles)

Ehsan Heidari Soureshjani, Ali Kazemi Babaheydari, Elahe Saberi

Computational Molecular Bioscience Vol.5 No.2, June 30, 2015

DOI: 10.4236/cmb.2015.52003 3,384 Downloads 4,663 Views Citations
Molecular Docking and Conceptual DFT-Based Study of Some Potential SARS-CoV-2 Inhibitors (Articles)

Norma Flores-Holguín, Daniel Glossman-Mitnik

Computational Molecular Bioscience Vol.10 No.4, December 31, 2020

DOI: 10.4236/cmb.2020.104008 886 Downloads 2,540 Views Citations
Rad51 ATP binding but not hydrolysis is required to recruit Rad10 in synthesis-dependent strand annealing sites in S. cerevisiae (Articles)

Justin Karlin, Paula L. Fischhaber

Advances in Biological Chemistry Vol.3 No.3, June 25, 2013

DOI: 10.4236/abc.2013.33033 4,104 Downloads 6,388 Views Citations
Molecular Dynamics Simulations of the DNA-CNT Interaction Process: Hybrid Quantum Chemistry Potential and Classical Trajectory Approach (Articles)

Mirzoaziz A. Khusenov, Ermuhammad B. Dushanov, Kholmirzo T. Kholmurodov

Journal of Modern Physics Vol.5 No.4, February 21, 2014

DOI: 10.4236/jmp.2014.54023 4,174 Downloads 7,271 Views Citations
This article belongs to the Special Issue on Molecular Dynamics Method
Computational Insights into Moxifloxacin Resistance Conferred in Asn499 Mutants of Mycobacterium tuberculosis DNA Gyrase (Articles)

MunMyong Choe, ChungIl Ri, ChunHyok Ku, JiUng Hwang, SangIk Pak, Qian Lu

Journal of Biosciences and Medicines Vol.13 No.8, August 15, 2025

DOI: 10.4236/jbm.2025.138013 85 Downloads 438 Views Citations
Nickase-dependent isothermal DNA amplification (Articles)

Yan He, Tao Jiang

Advances in Bioscience and Biotechnology Vol.4 No.4, April 19, 2013

DOI: 10.4236/abb.2013.44070 5,986 Downloads 10,851 Views Citations
Polycyclic Aromatic Hydrocarbon Molecule-Surface Binding Energies in Site Specific Graphene Bilayer Nanopores: A Puzzle-ene Force Field Calculation (Articles)

Thomas R. Rybolt, Claire B. Black

Graphene Vol.6 No.3, July 13, 2017

DOI: 10.4236/graphene.2017.63006 1,541 Downloads 3,364 Views Citations
Investigation of Size Effects on the Al Nanoclusters Physical Properties via Molecular Dynamics Simulations (Articles)

Mohammad Reza Sovizi, Ali Reza Madram

Open Access Library Journal Vol.1 No.3, June 11, 2014

DOI: 10.4236/oalib.1100473 2,671 Downloads 3,770 Views Citations
Thymidine Glycol: The Effect on DNA Structure and DNA Binding by Site-Specific Proteins (Articles)

Elena A. Kubareva, Fan Yang, Alexandra Yu. Ryazanova, Nina G. Dolinnaya, Andrei V. Golovin, Nikolai V. Molochkov, Elena A. Romanova, Elizaveta A. Karpova, Timofei S. Zatsepin, Tatiana S. Oretskaya

Natural Science Vol.7 No.11, November 16, 2015

DOI: 10.4236/ns.2015.711051 5,529 Downloads 6,989 Views Citations
Modeling Enhanced Adsorption of Explosive Molecules on a Hydroxylated Graphene Pore (Articles)

Ronald Scott Holt, Thomas R. Rybolt

Graphene Vol.8 No.1, January 31, 2019

DOI: 10.4236/graphene.2019.81001 871 Downloads 1,990 Views Citations
Docking of Human Heat Shock Protein 90 with Selenoderivatives of Geldanamycin (Articles)

Jason T. Kilembe, Albert S. Lundemba, Dikima D. Bibelayi, Glodi M. Ndefi, Juliette Pradon, Zéphyrin G. Yav

Crystal Structure Theory and Applications Vol.8 No.2, May 31, 2019

DOI: 10.4236/csta.2019.82002 818 Downloads 2,281 Views Citations
Docking of Glycokinase with Oxo, Sulfo, and Seleno Derivatives of the Carboxamide Activator S41 (Articles)

Glodi M. Ndefi, Albert S. Lundemba, Dikima D. Bibelayi, Jason T. Kilembe, Eliakim M. Kambale, Céline W. Kadima, Zéphyrin G. Yav

Crystal Structure Theory and Applications Vol.9 No.2, May 9, 2020

DOI: 10.4236/csta.2020.92003 576 Downloads 1,592 Views Citations
Quantum molecular dynamics simulation formultifragmentation resulting from an expandingnuclear matter (Articles)

Atef Abdel-hafiez, M. A. Khalifa, A. Abd El-Daiem

Natural Science Vol.3 No.7, July 25, 2011

DOI: 10.4236/ns.2011.37082 5,140 Downloads 9,444 Views Citations
Synthesis, Characterization and Antimicrobial Screening Mixed-Ligand Cu(II) and Zn(II) Complexes; DNA Binding Studies on Cu(II) Complex (Articles)

Omar H. Al-Obaidi

Open Journal of Inorganic Non-metallic Materials Vol.2 No.4, October 17, 2012

DOI: 10.4236/ojinm.2012.24007 6,696 Downloads 13,600 Views Citations

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